Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20881 and SM_b20882 are separated by 48 nucleotides SM_b20882 and SM_b20883 are separated by 183 nucleotides SM_b20883 and SM_b20884 are separated by 42 nucleotides SM_b20884 and SM_b20885 are separated by 48 nucleotides
SM_b20881: SM_b20881 - hypothetical protein, at 1,288,031 to 1,288,492
_b20881
SM_b20882: SM_b20882 - hypothetical protein, at 1,288,541 to 1,288,990
_b20882
SM_b20883: SM_b20883 - hypothetical protein, at 1,289,174 to 1,289,641
_b20883
SM_b20884: SM_b20884 - hypothetical protein, at 1,289,684 to 1,290,118
_b20884
SM_b20885: SM_b20885 - hypothetical protein, at 1,290,167 to 1,291,087
_b20885
Position (kb)
1289
1290 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1288.211 kb on + strand, within SM_b20881 at 1288.228 kb on - strand, within SM_b20881 at 1288.228 kb on - strand, within SM_b20881 at 1288.249 kb on + strand, within SM_b20881 at 1288.249 kb on + strand, within SM_b20881 at 1288.282 kb on - strand, within SM_b20881 at 1288.319 kb on + strand, within SM_b20881 at 1288.319 kb on + strand, within SM_b20881 at 1288.320 kb on - strand, within SM_b20881 at 1288.392 kb on + strand, within SM_b20881 at 1288.393 kb on - strand, within SM_b20881 at 1288.393 kb on - strand, within SM_b20881 at 1288.589 kb on + strand, within SM_b20882 at 1288.589 kb on + strand, within SM_b20882 at 1288.841 kb on + strand, within SM_b20882 at 1289.015 kb on + strand at 1289.016 kb on - strand at 1289.018 kb on + strand at 1289.019 kb on - strand at 1289.019 kb on - strand at 1289.112 kb on + strand at 1289.113 kb on - strand at 1289.113 kb on - strand at 1289.113 kb on - strand at 1289.116 kb on + strand at 1289.117 kb on - strand at 1289.117 kb on - strand at 1289.261 kb on + strand, within SM_b20883 at 1289.557 kb on + strand, within SM_b20883 at 1289.557 kb on + strand, within SM_b20883 at 1290.058 kb on + strand, within SM_b20884 at 1290.059 kb on - strand, within SM_b20884 at 1290.158 kb on + strand at 1290.158 kb on + strand at 1290.158 kb on + strand at 1290.237 kb on + strand at 1290.237 kb on + strand at 1290.237 kb on + strand at 1290.238 kb on - strand at 1290.238 kb on - strand at 1290.257 kb on + strand at 1290.257 kb on + strand at 1290.258 kb on - strand at 1290.340 kb on - strand, within SM_b20885 at 1290.340 kb on - strand, within SM_b20885 at 1290.384 kb on + strand, within SM_b20885 at 1290.384 kb on + strand, within SM_b20885 at 1290.385 kb on - strand, within SM_b20885 at 1290.385 kb on - strand, within SM_b20885 at 1290.454 kb on + strand, within SM_b20885 at 1290.522 kb on + strand, within SM_b20885 at 1290.522 kb on + strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.564 kb on + strand, within SM_b20885 at 1290.588 kb on + strand, within SM_b20885
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,288,211 + SM_b20881 0.39 -3.6 1,288,228 - SM_b20881 0.43 -0.3 1,288,228 - SM_b20881 0.43 -1.0 1,288,249 + SM_b20881 0.47 -0.4 1,288,249 + SM_b20881 0.47 +0.1 1,288,282 - SM_b20881 0.54 -0.2 1,288,319 + SM_b20881 0.62 +0.2 1,288,319 + SM_b20881 0.62 -0.5 1,288,320 - SM_b20881 0.63 -1.1 1,288,392 + SM_b20881 0.78 +1.3 1,288,393 - SM_b20881 0.78 +0.4 1,288,393 - SM_b20881 0.78 +0.5 1,288,589 + SM_b20882 0.11 +2.1 1,288,589 + SM_b20882 0.11 -0.6 1,288,841 + SM_b20882 0.67 -2.5 1,289,015 + -0.7 1,289,016 - +1.1 1,289,018 + -1.3 1,289,019 - +0.2 1,289,019 - +1.1 1,289,112 + -0.4 1,289,113 - -0.7 1,289,113 - -0.5 1,289,113 - +0.6 1,289,116 + +0.2 1,289,117 - +1.9 1,289,117 - +0.5 1,289,261 + SM_b20883 0.19 +0.5 1,289,557 + SM_b20883 0.82 -0.2 1,289,557 + SM_b20883 0.82 +2.2 1,290,058 + SM_b20884 0.86 +0.5 1,290,059 - SM_b20884 0.86 -0.7 1,290,158 + +0.6 1,290,158 + +0.1 1,290,158 + -0.4 1,290,237 + -0.4 1,290,237 + -0.8 1,290,237 + +0.5 1,290,238 - -2.5 1,290,238 - +1.0 1,290,257 + -0.6 1,290,257 + -0.2 1,290,258 - -0.2 1,290,340 - SM_b20885 0.19 +1.5 1,290,340 - SM_b20885 0.19 -0.4 1,290,384 + SM_b20885 0.24 +0.6 1,290,384 + SM_b20885 0.24 +0.2 1,290,385 - SM_b20885 0.24 +1.3 1,290,385 - SM_b20885 0.24 -0.8 1,290,454 + SM_b20885 0.31 +0.3 1,290,522 + SM_b20885 0.39 +1.9 1,290,522 + SM_b20885 0.39 -3.0 1,290,523 - SM_b20885 0.39 +0.5 1,290,523 - SM_b20885 0.39 +0.1 1,290,523 - SM_b20885 0.39 +0.3 1,290,523 - SM_b20885 0.39 -0.9 1,290,523 - SM_b20885 0.39 +0.7 1,290,523 - SM_b20885 0.39 +1.8 1,290,564 + SM_b20885 0.43 +0.3 1,290,588 + SM_b20885 0.46 +0.1
Or see this region's nucleotide sequence