Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20857 and SM_b20858 are separated by 156 nucleotides SM_b20858 and SM_b20859 are separated by 515 nucleotides
SM_b20857: SM_b20857 - glucose-6-phosphate isomerase, at 1,262,117 to 1,262,719
_b20857
SM_b20858: SM_b20858 - hypothetical protein, at 1,262,876 to 1,263,361
_b20858
SM_b20859: SM_b20859 - AraC family transcriptional regulator, at 1,263,877 to 1,264,827
_b20859
Position (kb)
1262
1263
1264 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1262.124 kb on + strand at 1262.125 kb on - strand at 1262.125 kb on - strand at 1262.192 kb on + strand, within SM_b20857 at 1262.193 kb on - strand, within SM_b20857 at 1262.193 kb on - strand, within SM_b20857 at 1262.226 kb on - strand, within SM_b20857 at 1262.244 kb on - strand, within SM_b20857 at 1262.244 kb on - strand, within SM_b20857 at 1262.254 kb on + strand, within SM_b20857 at 1262.283 kb on - strand, within SM_b20857 at 1262.283 kb on - strand, within SM_b20857 at 1262.372 kb on + strand, within SM_b20857 at 1262.424 kb on - strand, within SM_b20857 at 1262.506 kb on + strand, within SM_b20857 at 1262.506 kb on + strand, within SM_b20857 at 1262.507 kb on - strand, within SM_b20857 at 1262.507 kb on - strand, within SM_b20857 at 1262.507 kb on - strand, within SM_b20857 at 1262.507 kb on - strand, within SM_b20857 at 1262.513 kb on + strand, within SM_b20857 at 1262.513 kb on + strand, within SM_b20857 at 1262.513 kb on + strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.568 kb on + strand, within SM_b20857 at 1262.568 kb on + strand, within SM_b20857 at 1262.568 kb on + strand, within SM_b20857 at 1262.569 kb on - strand, within SM_b20857 at 1262.606 kb on + strand, within SM_b20857 at 1262.643 kb on + strand, within SM_b20857 at 1262.644 kb on - strand, within SM_b20857 at 1262.718 kb on - strand at 1262.718 kb on - strand at 1262.869 kb on + strand at 1262.869 kb on + strand at 1263.135 kb on + strand, within SM_b20858 at 1263.135 kb on + strand, within SM_b20858 at 1263.206 kb on + strand, within SM_b20858 at 1263.206 kb on + strand, within SM_b20858 at 1263.206 kb on + strand, within SM_b20858 at 1263.206 kb on + strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.368 kb on + strand at 1263.403 kb on + strand at 1263.472 kb on - strand at 1263.481 kb on - strand at 1263.540 kb on + strand at 1263.544 kb on - strand at 1263.544 kb on - strand at 1263.583 kb on + strand at 1263.662 kb on + strand at 1263.662 kb on + strand at 1263.674 kb on + strand at 1263.674 kb on + strand at 1263.675 kb on - strand at 1263.675 kb on - strand at 1263.675 kb on - strand at 1263.702 kb on - strand at 1263.843 kb on + strand at 1263.844 kb on - strand at 1263.844 kb on - strand at 1263.844 kb on - strand at 1263.844 kb on - strand at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.112 kb on - strand, within SM_b20859 at 1264.112 kb on - strand, within SM_b20859 at 1264.124 kb on + strand, within SM_b20859 at 1264.125 kb on - strand, within SM_b20859 at 1264.125 kb on - strand, within SM_b20859 at 1264.191 kb on - strand, within SM_b20859 at 1264.255 kb on + strand, within SM_b20859 at 1264.256 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,262,124 + -0.9 1,262,125 - +0.5 1,262,125 - -1.1 1,262,192 + SM_b20857 0.12 -1.1 1,262,193 - SM_b20857 0.13 +0.3 1,262,193 - SM_b20857 0.13 +0.9 1,262,226 - SM_b20857 0.18 -0.6 1,262,244 - SM_b20857 0.21 +1.5 1,262,244 - SM_b20857 0.21 -0.3 1,262,254 + SM_b20857 0.23 -1.6 1,262,283 - SM_b20857 0.28 -0.1 1,262,283 - SM_b20857 0.28 +0.7 1,262,372 + SM_b20857 0.42 -0.5 1,262,424 - SM_b20857 0.51 +1.2 1,262,506 + SM_b20857 0.65 +1.2 1,262,506 + SM_b20857 0.65 -1.1 1,262,507 - SM_b20857 0.65 -0.9 1,262,507 - SM_b20857 0.65 +1.3 1,262,507 - SM_b20857 0.65 -0.5 1,262,507 - SM_b20857 0.65 -0.7 1,262,513 + SM_b20857 0.66 +0.2 1,262,513 + SM_b20857 0.66 -0.0 1,262,513 + SM_b20857 0.66 +0.8 1,262,514 - SM_b20857 0.66 -3.2 1,262,514 - SM_b20857 0.66 -0.3 1,262,514 - SM_b20857 0.66 +0.1 1,262,514 - SM_b20857 0.66 +0.0 1,262,514 - SM_b20857 0.66 -0.0 1,262,514 - SM_b20857 0.66 +0.4 1,262,568 + SM_b20857 0.75 -3.3 1,262,568 + SM_b20857 0.75 -0.3 1,262,568 + SM_b20857 0.75 -1.3 1,262,569 - SM_b20857 0.75 -2.4 1,262,606 + SM_b20857 0.81 -1.2 1,262,643 + SM_b20857 0.87 +0.4 1,262,644 - SM_b20857 0.87 -1.0 1,262,718 - +0.4 1,262,718 - -1.8 1,262,869 + -0.6 1,262,869 + -0.3 1,263,135 + SM_b20858 0.53 -0.1 1,263,135 + SM_b20858 0.53 +0.7 1,263,206 + SM_b20858 0.68 +1.2 1,263,206 + SM_b20858 0.68 +0.1 1,263,206 + SM_b20858 0.68 +1.6 1,263,206 + SM_b20858 0.68 -0.2 1,263,207 - SM_b20858 0.68 +0.2 1,263,207 - SM_b20858 0.68 +3.0 1,263,207 - SM_b20858 0.68 -3.2 1,263,207 - SM_b20858 0.68 -2.9 1,263,207 - SM_b20858 0.68 +3.4 1,263,368 + -0.1 1,263,403 + +0.1 1,263,472 - -3.3 1,263,481 - -0.6 1,263,540 + +0.9 1,263,544 - +1.2 1,263,544 - -0.5 1,263,583 + -0.8 1,263,662 + -0.6 1,263,662 + +0.4 1,263,674 + +1.0 1,263,674 + -0.4 1,263,675 - +0.6 1,263,675 - -1.0 1,263,675 - +0.2 1,263,702 - -2.3 1,263,843 + +1.0 1,263,844 - -0.5 1,263,844 - -0.3 1,263,844 - -1.8 1,263,844 - +0.8 1,264,008 + SM_b20859 0.14 -0.3 1,264,008 + SM_b20859 0.14 +0.1 1,264,008 + SM_b20859 0.14 +1.9 1,264,008 + SM_b20859 0.14 +0.7 1,264,009 - SM_b20859 0.14 +0.3 1,264,009 - SM_b20859 0.14 -0.6 1,264,009 - SM_b20859 0.14 +0.5 1,264,009 - SM_b20859 0.14 -0.3 1,264,112 - SM_b20859 0.25 -0.8 1,264,112 - SM_b20859 0.25 +1.3 1,264,124 + SM_b20859 0.26 -0.1 1,264,125 - SM_b20859 0.26 -2.9 1,264,125 - SM_b20859 0.26 -0.1 1,264,191 - SM_b20859 0.33 +0.1 1,264,255 + SM_b20859 0.40 +1.1 1,264,256 - SM_b20859 0.40 -2.1 1,264,300 - SM_b20859 0.44 +1.2 1,264,300 - SM_b20859 0.44 -0.3 1,264,300 - SM_b20859 0.44 +0.3 1,264,350 + SM_b20859 0.50 +0.6 1,264,350 + SM_b20859 0.50 +0.9 1,264,350 + SM_b20859 0.50 -0.2 1,264,350 + SM_b20859 0.50 +1.1 1,264,350 + SM_b20859 0.50 +0.8 1,264,351 - SM_b20859 0.50 -0.3 1,264,351 - SM_b20859 0.50 -0.5 1,264,351 - SM_b20859 0.50 -1.6
Or see this region's nucleotide sequence