Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21011 and SM_b20846 are separated by 207 nucleotides SM_b20846 and SM_b21676 are separated by 266 nucleotides SM_b21676 and SM_b20847 are separated by 12 nucleotides
SM_b21011: SM_b21011 - xanthine dehydrogenase, at 1,244,928 to 1,246,415
_b21011
SM_b20846: SM_b20846 - xanthine dehydrogenase, at 1,246,623 to 1,248,959
_b20846
SM_b21676: SM_b21676 - hypothetical protein, at 1,249,226 to 1,249,519
_b21676
SM_b20847: SM_b20847 - LysR family transcriptional regulator, at 1,249,532 to 1,250,431
_b20847
Position (kb)
1246
1247
1248
1249 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1245.761 kb on + strand, within SM_b21011 at 1245.761 kb on + strand, within SM_b21011 at 1245.761 kb on + strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.762 kb on - strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.792 kb on + strand, within SM_b21011 at 1245.793 kb on - strand, within SM_b21011 at 1245.866 kb on + strand, within SM_b21011 at 1245.988 kb on - strand, within SM_b21011 at 1245.988 kb on - strand, within SM_b21011 at 1245.988 kb on - strand, within SM_b21011 at 1246.071 kb on + strand, within SM_b21011 at 1246.072 kb on - strand, within SM_b21011 at 1246.284 kb on + strand at 1246.485 kb on - strand at 1246.628 kb on + strand at 1246.628 kb on + strand at 1246.628 kb on + strand at 1246.728 kb on - strand at 1246.728 kb on - strand at 1247.022 kb on + strand, within SM_b20846 at 1247.022 kb on + strand, within SM_b20846 at 1247.023 kb on - strand, within SM_b20846 at 1247.023 kb on - strand, within SM_b20846 at 1247.188 kb on - strand, within SM_b20846 at 1247.188 kb on - strand, within SM_b20846 at 1247.249 kb on - strand, within SM_b20846 at 1247.279 kb on + strand, within SM_b20846 at 1247.280 kb on - strand, within SM_b20846 at 1247.544 kb on + strand, within SM_b20846 at 1247.623 kb on - strand, within SM_b20846 at 1247.671 kb on - strand, within SM_b20846 at 1247.899 kb on - strand, within SM_b20846 at 1247.899 kb on - strand, within SM_b20846 at 1247.899 kb on - strand, within SM_b20846 at 1248.039 kb on + strand, within SM_b20846 at 1248.040 kb on - strand, within SM_b20846 at 1248.096 kb on + strand, within SM_b20846 at 1248.098 kb on + strand, within SM_b20846 at 1248.098 kb on + strand, within SM_b20846 at 1248.098 kb on + strand, within SM_b20846 at 1248.098 kb on + strand, within SM_b20846 at 1248.099 kb on - strand, within SM_b20846 at 1248.188 kb on + strand, within SM_b20846 at 1248.188 kb on + strand, within SM_b20846 at 1248.189 kb on - strand, within SM_b20846 at 1248.387 kb on + strand, within SM_b20846 at 1248.388 kb on - strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.423 kb on + strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.424 kb on - strand, within SM_b20846 at 1248.426 kb on - strand, within SM_b20846 at 1248.477 kb on + strand, within SM_b20846 at 1248.478 kb on - strand, within SM_b20846 at 1248.480 kb on + strand, within SM_b20846 at 1248.481 kb on - strand, within SM_b20846 at 1248.522 kb on - strand, within SM_b20846 at 1248.537 kb on + strand, within SM_b20846 at 1248.538 kb on - strand, within SM_b20846 at 1248.538 kb on - strand, within SM_b20846 at 1248.706 kb on - strand, within SM_b20846 at 1248.706 kb on - strand, within SM_b20846 at 1248.713 kb on - strand, within SM_b20846 at 1248.947 kb on + strand at 1248.948 kb on - strand at 1248.948 kb on - strand at 1249.185 kb on - strand at 1249.228 kb on - strand at 1249.322 kb on + strand, within SM_b21676 at 1249.337 kb on + strand, within SM_b21676 at 1249.337 kb on + strand, within SM_b21676 at 1249.405 kb on + strand, within SM_b21676 at 1249.406 kb on - strand, within SM_b21676 at 1249.408 kb on - strand, within SM_b21676 at 1249.408 kb on - strand, within SM_b21676 at 1249.408 kb on - strand, within SM_b21676 at 1249.478 kb on - strand, within SM_b21676 at 1249.510 kb on + strand at 1249.649 kb on + strand, within SM_b20847 at 1249.650 kb on - strand, within SM_b20847 at 1249.944 kb on + strand, within SM_b20847 at 1249.944 kb on + strand, within SM_b20847 at 1249.944 kb on + strand, within SM_b20847 at 1249.944 kb on + strand, within SM_b20847 at 1249.945 kb on - strand, within SM_b20847 at 1249.945 kb on - strand, within SM_b20847
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,245,761 + SM_b21011 0.56 -2.7 1,245,761 + SM_b21011 0.56 -0.7 1,245,761 + SM_b21011 0.56 +0.4 1,245,762 - SM_b21011 0.56 +0.3 1,245,762 - SM_b21011 0.56 -0.1 1,245,762 - SM_b21011 0.56 -0.2 1,245,792 + SM_b21011 0.58 -0.1 1,245,792 + SM_b21011 0.58 +0.5 1,245,792 + SM_b21011 0.58 -1.4 1,245,793 - SM_b21011 0.58 -0.8 1,245,866 + SM_b21011 0.63 -0.3 1,245,988 - SM_b21011 0.71 +0.5 1,245,988 - SM_b21011 0.71 -1.6 1,245,988 - SM_b21011 0.71 -0.5 1,246,071 + SM_b21011 0.77 -0.4 1,246,072 - SM_b21011 0.77 +1.2 1,246,284 + +0.6 1,246,485 - +0.2 1,246,628 + +0.1 1,246,628 + +0.2 1,246,628 + +0.1 1,246,728 - -0.2 1,246,728 - -1.4 1,247,022 + SM_b20846 0.17 +0.5 1,247,022 + SM_b20846 0.17 +0.3 1,247,023 - SM_b20846 0.17 -2.6 1,247,023 - SM_b20846 0.17 +0.4 1,247,188 - SM_b20846 0.24 +0.3 1,247,188 - SM_b20846 0.24 -0.6 1,247,249 - SM_b20846 0.27 -0.1 1,247,279 + SM_b20846 0.28 -1.6 1,247,280 - SM_b20846 0.28 +0.0 1,247,544 + SM_b20846 0.39 -2.3 1,247,623 - SM_b20846 0.43 -0.3 1,247,671 - SM_b20846 0.45 -0.5 1,247,899 - SM_b20846 0.55 -0.0 1,247,899 - SM_b20846 0.55 -0.3 1,247,899 - SM_b20846 0.55 +0.5 1,248,039 + SM_b20846 0.61 -0.4 1,248,040 - SM_b20846 0.61 +2.2 1,248,096 + SM_b20846 0.63 -0.3 1,248,098 + SM_b20846 0.63 -4.3 1,248,098 + SM_b20846 0.63 -0.9 1,248,098 + SM_b20846 0.63 -1.6 1,248,098 + SM_b20846 0.63 -1.3 1,248,099 - SM_b20846 0.63 +1.2 1,248,188 + SM_b20846 0.67 -1.6 1,248,188 + SM_b20846 0.67 -0.1 1,248,189 - SM_b20846 0.67 -0.9 1,248,387 + SM_b20846 0.75 +2.2 1,248,388 - SM_b20846 0.76 +0.7 1,248,423 + SM_b20846 0.77 +0.5 1,248,423 + SM_b20846 0.77 +0.2 1,248,423 + SM_b20846 0.77 +0.0 1,248,423 + SM_b20846 0.77 -0.8 1,248,423 + SM_b20846 0.77 +0.2 1,248,424 - SM_b20846 0.77 -0.5 1,248,424 - SM_b20846 0.77 -1.0 1,248,424 - SM_b20846 0.77 -2.2 1,248,424 - SM_b20846 0.77 +0.1 1,248,424 - SM_b20846 0.77 -0.3 1,248,426 - SM_b20846 0.77 +0.8 1,248,477 + SM_b20846 0.79 -0.7 1,248,478 - SM_b20846 0.79 +0.1 1,248,480 + SM_b20846 0.79 -2.0 1,248,481 - SM_b20846 0.80 +0.9 1,248,522 - SM_b20846 0.81 -0.6 1,248,537 + SM_b20846 0.82 +1.3 1,248,538 - SM_b20846 0.82 -0.8 1,248,538 - SM_b20846 0.82 -1.4 1,248,706 - SM_b20846 0.89 -1.5 1,248,706 - SM_b20846 0.89 -0.7 1,248,713 - SM_b20846 0.89 +1.0 1,248,947 + -2.1 1,248,948 - -0.6 1,248,948 - -0.8 1,249,185 - -0.7 1,249,228 - -0.0 1,249,322 + SM_b21676 0.33 +1.2 1,249,337 + SM_b21676 0.38 +0.2 1,249,337 + SM_b21676 0.38 -0.8 1,249,405 + SM_b21676 0.61 +0.1 1,249,406 - SM_b21676 0.61 -0.4 1,249,408 - SM_b21676 0.62 -0.1 1,249,408 - SM_b21676 0.62 -0.4 1,249,408 - SM_b21676 0.62 +0.7 1,249,478 - SM_b21676 0.86 -0.0 1,249,510 + -0.2 1,249,649 + SM_b20847 0.13 +0.4 1,249,650 - SM_b20847 0.13 -1.6 1,249,944 + SM_b20847 0.46 +0.5 1,249,944 + SM_b20847 0.46 -0.9 1,249,944 + SM_b20847 0.46 +1.7 1,249,944 + SM_b20847 0.46 +0.0 1,249,945 - SM_b20847 0.46 +0.1 1,249,945 - SM_b20847 0.46 -1.6
Or see this region's nucleotide sequence