Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20818 and SM_b20819 are separated by 42 nucleotides SM_b20819 and SM_b20820 are separated by 109 nucleotides
SM_b20818: SM_b20818 - hydrocarbon oxygenase, at 607,130 to 608,221
_b20818
SM_b20819: SM_b20819 - ferredoxin, at 608,264 to 608,581
_b20819
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
Position (kb) 608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 607.340 kb on + strand, within SM_b20818 at 607.340 kb on + strand, within SM_b20818 at 607.382 kb on + strand, within SM_b20818 at 607.382 kb on + strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.544 kb on - strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.767 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.934 kb on + strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 608.174 kb on + strand at 608.219 kb on + strand at 608.220 kb on - strand at 608.357 kb on + strand, within SM_b20819 at 608.358 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.467 kb on + strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.534 kb on + strand, within SM_b20819 at 608.579 kb on + strand at 608.700 kb on - strand at 608.808 kb on + strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.884 kb on - strand, within SM_b20820 at 608.900 kb on + strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.982 kb on + strand, within SM_b20820 at 608.983 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.497 kb on - strand, within SM_b20820 at 609.537 kb on + strand, within SM_b20820 at 609.538 kb on - strand, within SM_b20820
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 607,340 + SM_b20818 0.19 +0.7 607,340 + SM_b20818 0.19 +0.1 607,382 + SM_b20818 0.23 -0.2 607,382 + SM_b20818 0.23 +0.3 607,383 - SM_b20818 0.23 +0.3 607,383 - SM_b20818 0.23 -1.8 607,383 - SM_b20818 0.23 -0.4 607,383 - SM_b20818 0.23 -1.3 607,544 - SM_b20818 0.38 +0.3 607,766 + SM_b20818 0.58 +0.1 607,766 + SM_b20818 0.58 -1.2 607,767 - SM_b20818 0.58 +0.4 607,794 - SM_b20818 0.61 -3.4 607,794 - SM_b20818 0.61 -2.9 607,934 + SM_b20818 0.74 +0.1 607,935 - SM_b20818 0.74 +0.3 607,935 - SM_b20818 0.74 +0.1 607,935 - SM_b20818 0.74 +1.1 607,976 + SM_b20818 0.77 +1.9 607,976 + SM_b20818 0.77 +1.2 607,976 + SM_b20818 0.77 +0.5 607,977 - SM_b20818 0.78 -0.5 607,977 - SM_b20818 0.78 +0.4 608,174 + -0.3 608,219 + +1.7 608,220 - -0.5 608,357 + SM_b20819 0.29 +2.2 608,358 - SM_b20819 0.30 -0.2 608,434 - SM_b20819 0.53 +1.4 608,434 - SM_b20819 0.53 +4.1 608,467 + SM_b20819 0.64 +1.6 608,484 - SM_b20819 0.69 +0.3 608,484 - SM_b20819 0.69 +0.9 608,534 + SM_b20819 0.85 +0.2 608,579 + -0.6 608,700 - +0.6 608,808 + -0.3 608,809 - +0.3 608,809 - -2.7 608,809 - +1.3 608,884 - SM_b20820 0.16 -0.9 608,900 + SM_b20820 0.17 -0.4 608,901 - SM_b20820 0.17 +0.7 608,901 - SM_b20820 0.17 +1.8 608,982 + SM_b20820 0.24 -0.5 608,983 - SM_b20820 0.24 +1.2 608,993 - SM_b20820 0.25 +1.3 608,993 - SM_b20820 0.25 +0.5 609,104 + SM_b20820 0.34 +0.7 609,104 + SM_b20820 0.34 +0.1 609,105 - SM_b20820 0.34 -0.4 609,105 - SM_b20820 0.34 +1.1 609,105 - SM_b20820 0.34 +0.4 609,497 - SM_b20820 0.66 -0.7 609,537 + SM_b20820 0.69 -1.8 609,538 - SM_b20820 0.69 -1.4
Or see this region's nucleotide sequence