Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20771

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20769 and SM_b20770 are separated by 34 nucleotidesSM_b20770 and SM_b20771 are separated by 105 nucleotidesSM_b20771 and SM_b20772 are separated by 75 nucleotides SM_b20769: SM_b20769 - hypothetical protein, at 1,561,373 to 1,562,911 _b20769 SM_b20770: SM_b20770 - hypothetical protein, at 1,562,946 to 1,563,446 _b20770 SM_b20771: SM_b20771 - hypothetical protein, at 1,563,552 to 1,564,538 _b20771 SM_b20772: SM_b20772 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,564,614 to 1,565,660 _b20772 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1562.709 kb on + strand, within SM_b20769at 1562.710 kb on - strand, within SM_b20769at 1562.902 kb on + strandat 1563.070 kb on + strand, within SM_b20770at 1563.070 kb on + strand, within SM_b20770at 1563.104 kb on - strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.290 kb on - strand, within SM_b20770at 1563.320 kb on + strand, within SM_b20770at 1563.320 kb on + strand, within SM_b20770at 1563.320 kb on + strand, within SM_b20770at 1563.321 kb on - strand, within SM_b20770at 1563.321 kb on - strand, within SM_b20770at 1563.356 kb on - strand, within SM_b20770at 1563.356 kb on - strand, within SM_b20770at 1563.553 kb on + strandat 1563.554 kb on - strandat 1563.554 kb on - strandat 1563.721 kb on + strand, within SM_b20771at 1563.721 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.215 kb on - strand, within SM_b20771at 1564.215 kb on - strand, within SM_b20771at 1564.216 kb on + strand, within SM_b20771at 1564.246 kb on + strand, within SM_b20771at 1564.247 kb on - strand, within SM_b20771at 1564.303 kb on + strand, within SM_b20771at 1564.409 kb on + strand, within SM_b20771at 1564.409 kb on + strand, within SM_b20771at 1564.690 kb on - strandat 1564.690 kb on - strandat 1564.690 kb on - strandat 1564.720 kb on + strand, within SM_b20772at 1564.828 kb on + strandat 1564.828 kb on + strand, within SM_b20772at 1564.828 kb on + strand, within SM_b20772at 1564.828 kb on + strand, within SM_b20772at 1564.828 kb on + strand, within SM_b20772at 1564.828 kb on + strand, within SM_b20772at 1564.829 kb on - strand, within SM_b20772at 1564.829 kb on - strand, within SM_b20772at 1564.829 kb on - strand, within SM_b20772at 1564.907 kb on + strand, within SM_b20772at 1565.233 kb on + strand, within SM_b20772

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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1,562,709 + SM_b20769 0.87 -0.9
1,562,710 - SM_b20769 0.87 +2.0
1,562,902 + +0.5
1,563,070 + SM_b20770 0.25 -2.2
1,563,070 + SM_b20770 0.25 -0.1
1,563,104 - SM_b20770 0.32 -0.3
1,563,289 + SM_b20770 0.68 -0.9
1,563,289 + SM_b20770 0.68 -0.1
1,563,289 + SM_b20770 0.68 +1.3
1,563,289 + SM_b20770 0.68 +0.9
1,563,289 + SM_b20770 0.68 -0.4
1,563,289 + SM_b20770 0.68 -1.0
1,563,290 - SM_b20770 0.69 +0.5
1,563,320 + SM_b20770 0.75 +0.3
1,563,320 + SM_b20770 0.75 +0.8
1,563,320 + SM_b20770 0.75 +0.8
1,563,321 - SM_b20770 0.75 +0.6
1,563,321 - SM_b20770 0.75 -0.9
1,563,356 - SM_b20770 0.82 -0.3
1,563,356 - SM_b20770 0.82 -0.3
1,563,553 + -2.1
1,563,554 - +0.3
1,563,554 - -0.1
1,563,721 + SM_b20771 0.17 -0.4
1,563,721 + SM_b20771 0.17 -0.0
1,564,009 + SM_b20771 0.46 -1.5
1,564,009 + SM_b20771 0.46 +2.8
1,564,009 + SM_b20771 0.46 -0.3
1,564,009 + SM_b20771 0.46 +0.4
1,564,009 + SM_b20771 0.46 -0.3
1,564,010 - SM_b20771 0.46 +0.6
1,564,010 - SM_b20771 0.46 -0.6
1,564,010 - SM_b20771 0.46 -1.0
1,564,010 - SM_b20771 0.46 +0.5
1,564,010 - SM_b20771 0.46 -0.6
1,564,010 - SM_b20771 0.46 +0.5
1,564,010 - SM_b20771 0.46 -1.2
1,564,215 - SM_b20771 0.67 -3.7
1,564,215 - SM_b20771 0.67 -0.1
1,564,216 + SM_b20771 0.67 -0.5
1,564,246 + SM_b20771 0.70 +3.2
1,564,247 - SM_b20771 0.70 -1.0
1,564,303 + SM_b20771 0.76 +2.6
1,564,409 + SM_b20771 0.87 -1.3
1,564,409 + SM_b20771 0.87 -0.4
1,564,690 - -3.7
1,564,690 - -2.7
1,564,690 - -0.5
1,564,720 + SM_b20772 0.10 +0.4
1,564,828 + +0.3
1,564,828 + SM_b20772 0.20 -1.2
1,564,828 + SM_b20772 0.20 +0.2
1,564,828 + SM_b20772 0.20 +0.9
1,564,828 + SM_b20772 0.20 +0.3
1,564,828 + SM_b20772 0.20 -0.2
1,564,829 - SM_b20772 0.21 +0.1
1,564,829 - SM_b20772 0.21 -0.9
1,564,829 - SM_b20772 0.21 -0.3
1,564,907 + SM_b20772 0.28 -2.3
1,565,233 + SM_b20772 0.59 +0.1

Or see this region's nucleotide sequence