Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20753 and SM_b20754 are separated by 116 nucleotides SM_b20754 and SM_b20755 are separated by 96 nucleotides
SM_b20753: SM_b20753 - acyl-CoA dehydrogenase, at 1,542,365 to 1,543,507
_b20753
SM_b20754: SM_b20754 - hypothetical protein, at 1,543,624 to 1,545,099
_b20754
SM_b20755: SM_b20755 - propionyl-CoA carboxylase subunit beta, at 1,545,196 to 1,546,728
_b20755
Position (kb)
1543
1544
1545
1546 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1542.723 kb on + strand, within SM_b20753 at 1542.723 kb on + strand, within SM_b20753 at 1542.723 kb on + strand, within SM_b20753 at 1542.724 kb on - strand, within SM_b20753 at 1542.724 kb on - strand, within SM_b20753 at 1542.724 kb on - strand, within SM_b20753 at 1542.724 kb on - strand, within SM_b20753 at 1542.778 kb on + strand, within SM_b20753 at 1543.012 kb on + strand, within SM_b20753 at 1543.013 kb on - strand, within SM_b20753 at 1543.013 kb on - strand, within SM_b20753 at 1543.014 kb on + strand, within SM_b20753 at 1543.014 kb on + strand, within SM_b20753 at 1543.014 kb on + strand, within SM_b20753 at 1543.015 kb on - strand, within SM_b20753 at 1543.069 kb on - strand, within SM_b20753 at 1543.143 kb on + strand, within SM_b20753 at 1543.143 kb on + strand, within SM_b20753 at 1543.144 kb on - strand, within SM_b20753 at 1543.144 kb on - strand, within SM_b20753 at 1543.315 kb on + strand, within SM_b20753 at 1543.316 kb on - strand, within SM_b20753 at 1543.347 kb on + strand, within SM_b20753 at 1543.347 kb on + strand, within SM_b20753 at 1543.347 kb on + strand, within SM_b20753 at 1543.347 kb on + strand, within SM_b20753 at 1543.347 kb on + strand, within SM_b20753 at 1543.347 kb on + strand, within SM_b20753 at 1543.347 kb on + strand, within SM_b20753 at 1543.348 kb on - strand, within SM_b20753 at 1543.507 kb on + strand at 1543.531 kb on + strand at 1543.543 kb on - strand at 1543.543 kb on - strand at 1543.549 kb on + strand at 1543.550 kb on - strand at 1543.553 kb on + strand at 1543.554 kb on - strand at 1543.554 kb on - strand at 1543.558 kb on + strand at 1543.559 kb on - strand at 1543.568 kb on - strand at 1543.568 kb on - strand at 1543.582 kb on - strand at 1543.595 kb on - strand at 1543.684 kb on - strand at 1543.797 kb on - strand, within SM_b20754 at 1543.797 kb on - strand, within SM_b20754 at 1543.797 kb on - strand, within SM_b20754 at 1543.797 kb on - strand, within SM_b20754 at 1543.815 kb on - strand, within SM_b20754 at 1543.815 kb on - strand, within SM_b20754 at 1544.213 kb on + strand, within SM_b20754 at 1544.240 kb on + strand, within SM_b20754 at 1544.240 kb on + strand, within SM_b20754 at 1544.271 kb on - strand, within SM_b20754 at 1544.271 kb on - strand, within SM_b20754 at 1544.271 kb on - strand, within SM_b20754 at 1544.402 kb on - strand, within SM_b20754 at 1544.464 kb on + strand, within SM_b20754 at 1544.487 kb on - strand, within SM_b20754 at 1544.573 kb on + strand, within SM_b20754 at 1544.573 kb on + strand, within SM_b20754 at 1544.574 kb on - strand, within SM_b20754 at 1544.574 kb on - strand, within SM_b20754 at 1544.574 kb on - strand, within SM_b20754 at 1544.574 kb on - strand, within SM_b20754 at 1544.612 kb on + strand, within SM_b20754 at 1544.690 kb on + strand, within SM_b20754 at 1544.774 kb on + strand, within SM_b20754 at 1544.774 kb on + strand, within SM_b20754 at 1544.936 kb on + strand, within SM_b20754 at 1544.936 kb on + strand, within SM_b20754 at 1545.022 kb on - strand at 1545.023 kb on + strand at 1545.023 kb on + strand at 1545.024 kb on - strand at 1545.024 kb on - strand at 1545.143 kb on - strand at 1545.206 kb on + strand at 1545.355 kb on + strand, within SM_b20755 at 1545.355 kb on + strand, within SM_b20755 at 1545.355 kb on + strand, within SM_b20755 at 1545.356 kb on - strand, within SM_b20755 at 1545.356 kb on - strand, within SM_b20755 at 1545.713 kb on - strand, within SM_b20755 at 1545.713 kb on - strand, within SM_b20755 at 1545.735 kb on + strand, within SM_b20755 at 1545.736 kb on - strand, within SM_b20755 at 1545.760 kb on + strand, within SM_b20755 at 1545.760 kb on + strand, within SM_b20755 at 1545.761 kb on - strand, within SM_b20755 at 1546.011 kb on - strand, within SM_b20755 at 1546.036 kb on + strand, within SM_b20755 at 1546.037 kb on - strand, within SM_b20755
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,542,723 + SM_b20753 0.31 +0.6 1,542,723 + SM_b20753 0.31 -0.6 1,542,723 + SM_b20753 0.31 -0.7 1,542,724 - SM_b20753 0.31 -0.4 1,542,724 - SM_b20753 0.31 +0.3 1,542,724 - SM_b20753 0.31 +0.2 1,542,724 - SM_b20753 0.31 +0.9 1,542,778 + SM_b20753 0.36 +0.5 1,543,012 + SM_b20753 0.57 -0.7 1,543,013 - SM_b20753 0.57 +0.5 1,543,013 - SM_b20753 0.57 +0.9 1,543,014 + SM_b20753 0.57 -0.2 1,543,014 + SM_b20753 0.57 +0.3 1,543,014 + SM_b20753 0.57 -0.3 1,543,015 - SM_b20753 0.57 -1.5 1,543,069 - SM_b20753 0.62 +0.3 1,543,143 + SM_b20753 0.68 +0.1 1,543,143 + SM_b20753 0.68 -0.8 1,543,144 - SM_b20753 0.68 +0.5 1,543,144 - SM_b20753 0.68 +2.0 1,543,315 + SM_b20753 0.83 +1.3 1,543,316 - SM_b20753 0.83 +0.6 1,543,347 + SM_b20753 0.86 +0.0 1,543,347 + SM_b20753 0.86 +0.0 1,543,347 + SM_b20753 0.86 -3.1 1,543,347 + SM_b20753 0.86 -2.1 1,543,347 + SM_b20753 0.86 -1.1 1,543,347 + SM_b20753 0.86 +0.0 1,543,347 + SM_b20753 0.86 +1.3 1,543,348 - SM_b20753 0.86 +0.3 1,543,507 + -0.6 1,543,531 + +0.7 1,543,543 - -0.4 1,543,543 - +0.4 1,543,549 + +0.6 1,543,550 - -1.7 1,543,553 + +1.1 1,543,554 - -0.7 1,543,554 - -0.4 1,543,558 + +3.3 1,543,559 - +0.9 1,543,568 - +0.1 1,543,568 - -0.5 1,543,582 - -0.3 1,543,595 - +0.3 1,543,684 - -0.1 1,543,797 - SM_b20754 0.12 +1.1 1,543,797 - SM_b20754 0.12 -2.1 1,543,797 - SM_b20754 0.12 +1.7 1,543,797 - SM_b20754 0.12 +0.7 1,543,815 - SM_b20754 0.13 -0.2 1,543,815 - SM_b20754 0.13 +0.3 1,544,213 + SM_b20754 0.40 -0.8 1,544,240 + SM_b20754 0.42 +0.2 1,544,240 + SM_b20754 0.42 -0.1 1,544,271 - SM_b20754 0.44 -0.7 1,544,271 - SM_b20754 0.44 +0.8 1,544,271 - SM_b20754 0.44 -0.7 1,544,402 - SM_b20754 0.53 +0.6 1,544,464 + SM_b20754 0.57 +1.4 1,544,487 - SM_b20754 0.58 +0.1 1,544,573 + SM_b20754 0.64 +2.5 1,544,573 + SM_b20754 0.64 -0.1 1,544,574 - SM_b20754 0.64 -0.4 1,544,574 - SM_b20754 0.64 -3.0 1,544,574 - SM_b20754 0.64 +0.6 1,544,574 - SM_b20754 0.64 +0.0 1,544,612 + SM_b20754 0.67 -0.3 1,544,690 + SM_b20754 0.72 -1.9 1,544,774 + SM_b20754 0.78 +2.7 1,544,774 + SM_b20754 0.78 +0.3 1,544,936 + SM_b20754 0.89 -1.0 1,544,936 + SM_b20754 0.89 +0.8 1,545,022 - -0.2 1,545,023 + +0.1 1,545,023 + -0.3 1,545,024 - +0.5 1,545,024 - +0.7 1,545,143 - -1.0 1,545,206 + -1.3 1,545,355 + SM_b20755 0.10 +1.0 1,545,355 + SM_b20755 0.10 +1.3 1,545,355 + SM_b20755 0.10 +0.3 1,545,356 - SM_b20755 0.10 +0.4 1,545,356 - SM_b20755 0.10 +0.3 1,545,713 - SM_b20755 0.34 +0.5 1,545,713 - SM_b20755 0.34 -1.7 1,545,735 + SM_b20755 0.35 +0.0 1,545,736 - SM_b20755 0.35 +0.1 1,545,760 + SM_b20755 0.37 +1.7 1,545,760 + SM_b20755 0.37 +0.7 1,545,761 - SM_b20755 0.37 -1.2 1,546,011 - SM_b20755 0.53 +0.7 1,546,036 + SM_b20755 0.55 -0.8 1,546,037 - SM_b20755 0.55 +2.5
Or see this region's nucleotide sequence