Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20631 and SM_b20632 are separated by 19 nucleotides SM_b20632 and SM_b20633 overlap by 4 nucleotides SM_b20633 and SM_b20634 are separated by 190 nucleotides
SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939
_b20631
SM_b20632: SM_b20632 - sugar uptake ABC transporter permease, at 1,651,959 to 1,652,822
_b20632
SM_b20633: SM_b20633 - sugar uptake ABC transporter permease, at 1,652,819 to 1,653,736
_b20633
SM_b20634: SM_b20634 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,653,927 to 1,655,162
_b20634
Position (kb)
1652
1653
1654 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1651.994 kb on - strand at 1651.994 kb on - strand at 1652.126 kb on - strand, within SM_b20632 at 1652.359 kb on + strand, within SM_b20632 at 1652.360 kb on - strand, within SM_b20632 at 1652.360 kb on - strand, within SM_b20632 at 1652.952 kb on + strand, within SM_b20633 at 1652.952 kb on + strand, within SM_b20633 at 1652.953 kb on - strand, within SM_b20633 at 1653.003 kb on + strand, within SM_b20633 at 1653.003 kb on + strand, within SM_b20633 at 1653.004 kb on - strand, within SM_b20633 at 1653.238 kb on + strand, within SM_b20633 at 1653.287 kb on - strand, within SM_b20633 at 1653.479 kb on - strand, within SM_b20633 at 1653.481 kb on - strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.538 kb on - strand, within SM_b20633 at 1653.538 kb on - strand, within SM_b20633 at 1653.658 kb on + strand at 1653.659 kb on - strand at 1653.660 kb on + strand at 1653.660 kb on + strand at 1653.660 kb on + strand at 1653.661 kb on - strand at 1653.795 kb on + strand at 1653.795 kb on + strand at 1654.001 kb on - strand at 1654.070 kb on + strand, within SM_b20634 at 1654.070 kb on + strand, within SM_b20634 at 1654.070 kb on + strand, within SM_b20634 at 1654.071 kb on - strand, within SM_b20634 at 1654.073 kb on - strand, within SM_b20634 at 1654.210 kb on + strand, within SM_b20634 at 1654.210 kb on + strand, within SM_b20634 at 1654.211 kb on - strand, within SM_b20634 at 1654.214 kb on + strand, within SM_b20634 at 1654.214 kb on + strand, within SM_b20634 at 1654.214 kb on + strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.216 kb on + strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.369 kb on - strand, within SM_b20634 at 1654.517 kb on + strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.636 kb on + strand, within SM_b20634 at 1654.733 kb on - strand, within SM_b20634
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,651,994 - -0.6 1,651,994 - +0.9 1,652,126 - SM_b20632 0.19 +0.2 1,652,359 + SM_b20632 0.46 -0.8 1,652,360 - SM_b20632 0.46 -0.3 1,652,360 - SM_b20632 0.46 +0.3 1,652,952 + SM_b20633 0.14 +0.3 1,652,952 + SM_b20633 0.14 +1.3 1,652,953 - SM_b20633 0.15 -3.4 1,653,003 + SM_b20633 0.20 +1.4 1,653,003 + SM_b20633 0.20 -0.3 1,653,004 - SM_b20633 0.20 +0.7 1,653,238 + SM_b20633 0.46 -0.7 1,653,287 - SM_b20633 0.51 +2.0 1,653,479 - SM_b20633 0.72 -2.2 1,653,481 - SM_b20633 0.72 -0.1 1,653,537 + SM_b20633 0.78 +1.1 1,653,537 + SM_b20633 0.78 +3.6 1,653,537 + SM_b20633 0.78 -1.1 1,653,537 + SM_b20633 0.78 -1.1 1,653,537 + SM_b20633 0.78 +1.0 1,653,538 - SM_b20633 0.78 +0.0 1,653,538 - SM_b20633 0.78 +0.3 1,653,658 + -0.6 1,653,659 - -0.9 1,653,660 + -0.4 1,653,660 + -1.0 1,653,660 + +0.9 1,653,661 - -0.6 1,653,795 + -1.2 1,653,795 + -0.8 1,654,001 - +0.0 1,654,070 + SM_b20634 0.12 -0.3 1,654,070 + SM_b20634 0.12 -0.8 1,654,070 + SM_b20634 0.12 -3.3 1,654,071 - SM_b20634 0.12 -0.0 1,654,073 - SM_b20634 0.12 -0.5 1,654,210 + SM_b20634 0.23 -0.0 1,654,210 + SM_b20634 0.23 -1.5 1,654,211 - SM_b20634 0.23 +0.2 1,654,214 + SM_b20634 0.23 -0.0 1,654,214 + SM_b20634 0.23 -0.4 1,654,214 + SM_b20634 0.23 -2.4 1,654,215 - SM_b20634 0.23 -0.2 1,654,215 - SM_b20634 0.23 -1.5 1,654,215 - SM_b20634 0.23 -0.6 1,654,215 - SM_b20634 0.23 -0.3 1,654,215 - SM_b20634 0.23 -0.8 1,654,216 + SM_b20634 0.23 -0.4 1,654,217 - SM_b20634 0.23 -1.9 1,654,217 - SM_b20634 0.23 +0.2 1,654,217 - SM_b20634 0.23 -0.3 1,654,369 - SM_b20634 0.36 +0.5 1,654,517 + SM_b20634 0.48 -1.4 1,654,628 - SM_b20634 0.57 -0.4 1,654,628 - SM_b20634 0.57 -2.6 1,654,628 - SM_b20634 0.57 +1.1 1,654,636 + SM_b20634 0.57 +0.3 1,654,733 - SM_b20634 0.65 +0.8
Or see this region's nucleotide sequence