Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20530 and SM_b20531 are separated by 234 nucleotides SM_b20531 and SM_b20532 are separated by 1 nucleotides SM_b20532 and SM_b20533 are separated by 588 nucleotides
SM_b20530: SM_b20530 - hypothetical protein, at 554,407 to 554,745
_b20530
SM_b20531: SM_b20531 - RNA polymerase sigma factor, at 554,980 to 555,516
_b20531
SM_b20532: SM_b20532 - hypothetical protein, at 555,518 to 556,156
_b20532
SM_b20533: SM_b20533 - hypothetical protein, at 556,745 to 556,948
_b20533
Position (kb) 555
556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.595 kb on - strand, within SM_b20530 at 554.809 kb on + strand at 554.809 kb on + strand at 554.810 kb on - strand at 554.810 kb on - strand at 554.823 kb on - strand at 554.877 kb on - strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.940 kb on + strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 554.941 kb on - strand at 555.050 kb on - strand, within SM_b20531 at 555.050 kb on - strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.167 kb on + strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.168 kb on - strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.177 kb on + strand, within SM_b20531 at 555.178 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.249 kb on - strand, within SM_b20531 at 555.393 kb on + strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.394 kb on - strand, within SM_b20531 at 555.395 kb on + strand, within SM_b20531 at 555.643 kb on - strand, within SM_b20532 at 555.664 kb on + strand, within SM_b20532 at 555.667 kb on + strand, within SM_b20532 at 555.966 kb on - strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.040 kb on + strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.041 kb on - strand, within SM_b20532 at 556.159 kb on - strand at 556.181 kb on - strand at 556.196 kb on - strand at 556.318 kb on + strand at 556.372 kb on + strand at 556.372 kb on + strand at 556.372 kb on + strand at 556.373 kb on - strand at 556.373 kb on - strand at 556.373 kb on - strand at 556.582 kb on + strand at 556.582 kb on + strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.595 kb on - strand at 556.636 kb on + strand at 556.646 kb on - strand at 556.687 kb on - strand at 556.791 kb on - strand, within SM_b20533 at 556.918 kb on + strand, within SM_b20533 at 556.919 kb on - strand, within SM_b20533 at 556.919 kb on - strand, within SM_b20533 at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.962 kb on - strand at 556.962 kb on - strand at 556.962 kb on - strand at 556.965 kb on + strand at 556.966 kb on - strand at 556.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 554,595 - SM_b20530 0.55 +1.6 554,595 - SM_b20530 0.55 -0.2 554,595 - SM_b20530 0.55 -1.6 554,595 - SM_b20530 0.55 +0.5 554,595 - SM_b20530 0.55 -3.1 554,809 + -0.9 554,809 + +0.5 554,810 - +2.5 554,810 - +0.5 554,823 - -2.3 554,877 - -0.6 554,940 + +0.3 554,940 + -1.4 554,940 + -0.6 554,940 + +0.5 554,940 + -3.2 554,941 - -1.2 554,941 - -0.1 554,941 - -1.1 554,941 - +0.6 554,941 - +0.2 555,050 - SM_b20531 0.13 -0.8 555,050 - SM_b20531 0.13 -0.4 555,167 + SM_b20531 0.35 +0.6 555,167 + SM_b20531 0.35 -1.2 555,168 - SM_b20531 0.35 +0.6 555,168 - SM_b20531 0.35 -0.2 555,177 + SM_b20531 0.37 -1.0 555,177 + SM_b20531 0.37 +0.2 555,177 + SM_b20531 0.37 -0.1 555,177 + SM_b20531 0.37 +0.1 555,177 + SM_b20531 0.37 -1.4 555,178 - SM_b20531 0.37 +0.1 555,249 - SM_b20531 0.50 -1.2 555,249 - SM_b20531 0.50 -0.8 555,393 + SM_b20531 0.77 -0.4 555,394 - SM_b20531 0.77 -0.5 555,394 - SM_b20531 0.77 +0.4 555,394 - SM_b20531 0.77 -1.8 555,394 - SM_b20531 0.77 -3.2 555,394 - SM_b20531 0.77 +0.2 555,394 - SM_b20531 0.77 -1.9 555,394 - SM_b20531 0.77 +1.2 555,395 + SM_b20531 0.77 +1.2 555,643 - SM_b20532 0.20 -1.2 555,664 + SM_b20532 0.23 -0.5 555,667 + SM_b20532 0.23 -0.8 555,966 - SM_b20532 0.70 -2.0 556,040 + SM_b20532 0.82 +0.6 556,040 + SM_b20532 0.82 +0.2 556,040 + SM_b20532 0.82 -1.6 556,040 + SM_b20532 0.82 -0.0 556,040 + SM_b20532 0.82 -1.4 556,041 - SM_b20532 0.82 +0.2 556,041 - SM_b20532 0.82 -1.0 556,041 - SM_b20532 0.82 +0.0 556,041 - SM_b20532 0.82 +0.0 556,041 - SM_b20532 0.82 +0.1 556,041 - SM_b20532 0.82 -0.4 556,159 - -0.2 556,181 - -0.0 556,196 - +0.5 556,318 + -1.4 556,372 + +0.1 556,372 + -3.6 556,372 + -0.6 556,373 - -0.4 556,373 - +2.8 556,373 - -0.6 556,582 + +0.6 556,582 + -0.3 556,583 - -2.6 556,583 - +0.3 556,583 - +0.0 556,595 - +1.7 556,636 + -0.1 556,646 - +0.2 556,687 - -1.6 556,791 - SM_b20533 0.23 -0.0 556,918 + SM_b20533 0.85 +0.6 556,919 - SM_b20533 0.85 -0.3 556,919 - SM_b20533 0.85 -1.6 556,961 + -0.1 556,961 + +3.2 556,961 + -0.8 556,961 + +0.4 556,961 + +0.4 556,961 + +1.0 556,962 - -0.0 556,962 - +0.8 556,962 - -0.5 556,965 + -3.3 556,966 - -0.5 556,966 - +0.2
Or see this region's nucleotide sequence