Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20460 and SM_b20461 are separated by 10 nucleotides SM_b20461 and SM_b20462 overlap by 4 nucleotides SM_b20462 and SM_b20463 overlap by 1 nucleotides
SM_b20460: SM_b20460 - cellulose synthase, at 472,441 to 474,306
_b20460
SM_b20461: SM_b20461 - hypothetical protein, at 474,317 to 474,925
_b20461
SM_b20462: SM_b20462 - cellulase H protein, at 474,922 to 475,899
_b20462
SM_b20463: SM_b20463 - hypothetical protein, at 475,899 to 476,408
_b20463
Position (kb) 474
475 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 473.437 kb on - strand, within SM_b20460 at 473.461 kb on + strand, within SM_b20460 at 473.461 kb on + strand, within SM_b20460 at 473.461 kb on + strand, within SM_b20460 at 473.462 kb on - strand, within SM_b20460 at 473.462 kb on - strand, within SM_b20460 at 473.462 kb on - strand, within SM_b20460 at 473.617 kb on + strand, within SM_b20460 at 473.635 kb on + strand, within SM_b20460 at 473.669 kb on + strand, within SM_b20460 at 473.674 kb on + strand, within SM_b20460 at 473.675 kb on - strand, within SM_b20460 at 473.779 kb on - strand, within SM_b20460 at 473.959 kb on + strand, within SM_b20460 at 473.959 kb on + strand, within SM_b20460 at 473.959 kb on + strand, within SM_b20460 at 473.959 kb on + strand, within SM_b20460 at 473.960 kb on - strand, within SM_b20460 at 473.960 kb on - strand, within SM_b20460 at 474.193 kb on + strand at 474.193 kb on + strand at 474.194 kb on - strand at 474.240 kb on - strand at 474.294 kb on - strand at 474.305 kb on - strand at 474.305 kb on - strand at 474.305 kb on - strand at 474.305 kb on - strand at 474.485 kb on + strand, within SM_b20461 at 474.485 kb on + strand, within SM_b20461 at 474.485 kb on + strand, within SM_b20461 at 474.486 kb on - strand, within SM_b20461 at 474.486 kb on - strand, within SM_b20461 at 474.486 kb on - strand, within SM_b20461 at 474.486 kb on - strand, within SM_b20461 at 474.720 kb on - strand, within SM_b20461 at 474.720 kb on - strand, within SM_b20461 at 474.749 kb on + strand, within SM_b20461 at 474.750 kb on - strand, within SM_b20461 at 474.877 kb on + strand at 474.877 kb on + strand at 474.946 kb on - strand at 475.093 kb on + strand, within SM_b20462 at 475.198 kb on + strand, within SM_b20462 at 475.199 kb on - strand, within SM_b20462 at 475.589 kb on - strand, within SM_b20462 at 475.723 kb on + strand, within SM_b20462 at 475.723 kb on + strand, within SM_b20462 at 475.723 kb on + strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.724 kb on - strand, within SM_b20462 at 475.813 kb on + strand at 475.863 kb on + strand at 475.911 kb on + strand at 475.911 kb on + strand at 475.912 kb on - strand at 475.921 kb on + strand at 475.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 473,437 - SM_b20460 0.53 +0.6 473,461 + SM_b20460 0.55 +1.0 473,461 + SM_b20460 0.55 -0.1 473,461 + SM_b20460 0.55 -0.2 473,462 - SM_b20460 0.55 -0.8 473,462 - SM_b20460 0.55 +0.1 473,462 - SM_b20460 0.55 -0.1 473,617 + SM_b20460 0.63 -0.6 473,635 + SM_b20460 0.64 +0.8 473,669 + SM_b20460 0.66 -1.0 473,674 + SM_b20460 0.66 +1.3 473,675 - SM_b20460 0.66 +0.7 473,779 - SM_b20460 0.72 -0.4 473,959 + SM_b20460 0.81 -0.0 473,959 + SM_b20460 0.81 -1.1 473,959 + SM_b20460 0.81 -0.1 473,959 + SM_b20460 0.81 +0.0 473,960 - SM_b20460 0.81 -1.2 473,960 - SM_b20460 0.81 -0.8 474,193 + +0.1 474,193 + +1.9 474,194 - -1.0 474,240 - -0.4 474,294 - -1.0 474,305 - +0.6 474,305 - +0.2 474,305 - -0.5 474,305 - +2.8 474,485 + SM_b20461 0.28 -0.7 474,485 + SM_b20461 0.28 -2.2 474,485 + SM_b20461 0.28 +0.3 474,486 - SM_b20461 0.28 -4.1 474,486 - SM_b20461 0.28 -1.0 474,486 - SM_b20461 0.28 -0.0 474,486 - SM_b20461 0.28 -3.2 474,720 - SM_b20461 0.66 -2.0 474,720 - SM_b20461 0.66 -0.5 474,749 + SM_b20461 0.71 +0.3 474,750 - SM_b20461 0.71 -0.7 474,877 + +0.1 474,877 + +0.6 474,946 - -1.4 475,093 + SM_b20462 0.17 +0.1 475,198 + SM_b20462 0.28 -0.0 475,199 - SM_b20462 0.28 -0.8 475,589 - SM_b20462 0.68 -1.7 475,723 + SM_b20462 0.82 -0.1 475,723 + SM_b20462 0.82 -1.0 475,723 + SM_b20462 0.82 -1.2 475,724 - SM_b20462 0.82 -0.4 475,724 - SM_b20462 0.82 +0.4 475,724 - SM_b20462 0.82 -0.0 475,724 - SM_b20462 0.82 -1.5 475,724 - SM_b20462 0.82 -1.9 475,724 - SM_b20462 0.82 -0.7 475,813 + +0.4 475,863 + +0.7 475,911 + -0.4 475,911 + -0.3 475,912 - -0.6 475,921 + -0.3 475,921 + -2.7
Or see this region's nucleotide sequence