Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20426 and SM_b20427 are separated by 170 nucleotides SM_b20427 and SM_b20428 are separated by 58 nucleotides
SM_b20426: SM_b20426 - transcriptional regulator, at 440,994 to 442,274
_b20426
SM_b20427: SM_b20427 - amino acid ABC transporter ATP-binding protein, at 442,445 to 443,230
_b20427
SM_b20428: SM_b20428 - amino acid ABC transporter substrate-binding protein, at 443,289 to 444,140
_b20428
Position (kb) 442
443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 441.473 kb on + strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.495 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.819 kb on + strand, within SM_b20426 at 442.653 kb on - strand, within SM_b20427 at 442.759 kb on + strand, within SM_b20427 at 442.760 kb on - strand, within SM_b20427 at 443.228 kb on + strand at 443.441 kb on + strand, within SM_b20428 at 443.547 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.874 kb on + strand, within SM_b20428 at 443.967 kb on + strand, within SM_b20428 at 444.078 kb on + strand at 444.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 441,473 + SM_b20426 0.37 -0.3 441,474 - SM_b20426 0.37 -1.4 441,474 - SM_b20426 0.37 -0.6 441,474 - SM_b20426 0.37 +1.2 441,495 + SM_b20426 0.39 -0.5 441,771 + SM_b20426 0.61 -0.5 441,771 + SM_b20426 0.61 -2.6 441,771 + SM_b20426 0.61 -0.3 441,819 + SM_b20426 0.64 +1.0 442,653 - SM_b20427 0.26 +0.9 442,759 + SM_b20427 0.40 +2.8 442,760 - SM_b20427 0.40 -0.2 443,228 + -0.8 443,441 + SM_b20428 0.18 -1.8 443,547 + SM_b20428 0.30 -0.4 443,712 + SM_b20428 0.50 -0.4 443,712 + SM_b20428 0.50 -0.2 443,874 + SM_b20428 0.69 +0.7 443,967 + SM_b20428 0.80 -1.5 444,078 + -3.3 444,139 - -0.2
Or see this region's nucleotide sequence