Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20378 and SM_b20379 are separated by 9 nucleotides SM_b20379 and SM_b20380 are separated by 30 nucleotides
SM_b20378: SM_b20378 - aldehyde dehydrogenase, at 388,482 to 389,945
_b20378
SM_b20379: SM_b20379 - aminotransferase, at 389,955 to 391,340
_b20379
SM_b20380: SM_b20380 - ABC transporter ATP-binding protein, at 391,371 to 392,420
_b20380
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 388.965 kb on + strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 389.056 kb on + strand, within SM_b20378 at 389.057 kb on - strand, within SM_b20378 at 389.094 kb on - strand, within SM_b20378 at 389.094 kb on - strand, within SM_b20378 at 389.563 kb on + strand, within SM_b20378 at 389.878 kb on + strand at 389.879 kb on - strand at 389.880 kb on + strand at 389.917 kb on + strand at 389.917 kb on + strand at 389.994 kb on - strand at 389.994 kb on - strand at 389.994 kb on - strand at 390.177 kb on - strand, within SM_b20379 at 390.177 kb on - strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.289 kb on - strand, within SM_b20379 at 390.317 kb on - strand, within SM_b20379 at 390.463 kb on + strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.589 kb on + strand, within SM_b20379 at 390.590 kb on - strand, within SM_b20379 at 390.805 kb on - strand, within SM_b20379 at 390.889 kb on + strand, within SM_b20379 at 390.890 kb on - strand, within SM_b20379 at 390.947 kb on - strand, within SM_b20379 at 391.093 kb on + strand, within SM_b20379 at 391.093 kb on + strand, within SM_b20379 at 391.094 kb on - strand, within SM_b20379 at 391.094 kb on - strand, within SM_b20379 at 391.192 kb on + strand, within SM_b20379 at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.219 kb on + strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.513 kb on + strand, within SM_b20380 at 391.747 kb on + strand, within SM_b20380 at 391.846 kb on + strand, within SM_b20380 at 391.846 kb on + strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 391.847 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380 at 392.162 kb on - strand, within SM_b20380
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 388,965 + SM_b20378 0.33 +1.5 388,966 - SM_b20378 0.33 +1.6 388,966 - SM_b20378 0.33 -2.6 388,966 - SM_b20378 0.33 -0.3 388,966 - SM_b20378 0.33 +0.1 389,056 + SM_b20378 0.39 -2.5 389,057 - SM_b20378 0.39 +0.2 389,094 - SM_b20378 0.42 -0.6 389,094 - SM_b20378 0.42 -0.1 389,563 + SM_b20378 0.74 -2.2 389,878 + +0.5 389,879 - -0.1 389,880 + -0.8 389,917 + -1.6 389,917 + -1.4 389,994 - +0.7 389,994 - +0.0 389,994 - +0.5 390,177 - SM_b20379 0.16 -3.4 390,177 - SM_b20379 0.16 -0.0 390,288 + SM_b20379 0.24 +0.1 390,288 + SM_b20379 0.24 +2.5 390,288 + SM_b20379 0.24 +0.4 390,289 - SM_b20379 0.24 +0.3 390,317 - SM_b20379 0.26 +0.2 390,463 + SM_b20379 0.37 -0.8 390,464 - SM_b20379 0.37 -0.1 390,464 - SM_b20379 0.37 +0.6 390,464 - SM_b20379 0.37 -0.6 390,589 + SM_b20379 0.46 -1.7 390,590 - SM_b20379 0.46 -0.8 390,805 - SM_b20379 0.61 -0.6 390,889 + SM_b20379 0.67 -1.9 390,890 - SM_b20379 0.67 -0.1 390,947 - SM_b20379 0.72 -0.3 391,093 + SM_b20379 0.82 -0.4 391,093 + SM_b20379 0.82 -0.4 391,094 - SM_b20379 0.82 -1.1 391,094 - SM_b20379 0.82 -0.2 391,192 + SM_b20379 0.89 -0.7 391,219 + -1.0 391,219 + -0.4 391,219 + -0.9 391,219 + +0.4 391,219 + -0.4 391,219 + -1.9 391,220 - +0.6 391,220 - -0.2 391,220 - +1.2 391,220 - +0.8 391,220 - -0.1 391,220 - -1.7 391,220 - -2.7 391,513 + SM_b20380 0.14 -1.1 391,747 + SM_b20380 0.36 +0.1 391,846 + SM_b20380 0.45 -0.4 391,846 + SM_b20380 0.45 +0.9 391,847 - SM_b20380 0.45 -1.4 391,847 - SM_b20380 0.45 -2.6 391,847 - SM_b20380 0.45 +0.9 391,847 - SM_b20380 0.45 -0.6 391,847 - SM_b20380 0.45 +0.6 392,162 - SM_b20380 0.75 -0.1 392,162 - SM_b20380 0.75 -0.5 392,162 - SM_b20380 0.75 +1.8
Or see this region's nucleotide sequence