Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20320 and SM_b20321 are separated by 28 nucleotides SM_b20321 and SM_b20322 overlap by 1 nucleotides SM_b20322 and SM_b20323 are separated by 87 nucleotides
SM_b20320: SM_b20320 - TRAP-type large permease component, at 322,940 to 323,935
_b20320
SM_b20321: SM_b20321 - hypothetical protein, at 323,964 to 325,229
_b20321
SM_b20322: SM_b20322 - TRAP-type small permease component, at 325,229 to 325,834
_b20322
SM_b20323: SM_b20323 - transcriptional regulator, at 325,922 to 326,581
_b20323
Position (kb) 323
324
325
326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 323.008 kb on - strand at 323.008 kb on - strand at 323.379 kb on + strand, within SM_b20320 at 323.405 kb on - strand, within SM_b20320 at 324.184 kb on + strand, within SM_b20321 at 324.355 kb on + strand, within SM_b20321 at 324.415 kb on + strand, within SM_b20321 at 324.416 kb on - strand, within SM_b20321 at 324.603 kb on - strand, within SM_b20321 at 324.603 kb on - strand, within SM_b20321 at 324.643 kb on + strand, within SM_b20321 at 324.649 kb on + strand, within SM_b20321 at 324.649 kb on + strand, within SM_b20321 at 324.650 kb on - strand, within SM_b20321 at 324.688 kb on - strand, within SM_b20321 at 324.728 kb on + strand, within SM_b20321 at 324.728 kb on + strand, within SM_b20321 at 324.729 kb on - strand, within SM_b20321 at 324.753 kb on + strand, within SM_b20321 at 324.761 kb on - strand, within SM_b20321 at 324.844 kb on + strand, within SM_b20321 at 324.844 kb on + strand, within SM_b20321 at 324.915 kb on + strand, within SM_b20321 at 324.952 kb on + strand, within SM_b20321 at 324.952 kb on + strand, within SM_b20321 at 324.952 kb on + strand at 324.952 kb on + strand, within SM_b20321 at 324.953 kb on - strand, within SM_b20321 at 325.075 kb on + strand, within SM_b20321 at 325.147 kb on + strand at 325.147 kb on + strand at 325.148 kb on - strand at 325.397 kb on - strand, within SM_b20322 at 325.398 kb on + strand, within SM_b20322 at 325.566 kb on + strand, within SM_b20322 at 325.651 kb on - strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 323,008 - -0.5 323,008 - -2.5 323,379 + SM_b20320 0.44 +0.0 323,405 - SM_b20320 0.47 -2.6 324,184 + SM_b20321 0.17 +1.8 324,355 + SM_b20321 0.31 -0.2 324,415 + SM_b20321 0.36 -1.4 324,416 - SM_b20321 0.36 +0.2 324,603 - SM_b20321 0.50 +0.1 324,603 - SM_b20321 0.50 -1.5 324,643 + SM_b20321 0.54 -0.1 324,649 + SM_b20321 0.54 -3.5 324,649 + SM_b20321 0.54 +0.2 324,650 - SM_b20321 0.54 -1.1 324,688 - SM_b20321 0.57 -2.1 324,728 + SM_b20321 0.60 -1.6 324,728 + SM_b20321 0.60 -0.9 324,729 - SM_b20321 0.60 +0.3 324,753 + SM_b20321 0.62 +0.1 324,761 - SM_b20321 0.63 +1.0 324,844 + SM_b20321 0.70 -0.6 324,844 + SM_b20321 0.70 +0.7 324,915 + SM_b20321 0.75 -0.9 324,952 + SM_b20321 0.78 -0.8 324,952 + SM_b20321 0.78 -0.3 324,952 + +4.4 324,952 + SM_b20321 0.78 +0.3 324,953 - SM_b20321 0.78 -1.0 325,075 + SM_b20321 0.88 +0.1 325,147 + -0.2 325,147 + -0.3 325,148 - +0.3 325,397 - SM_b20322 0.28 +0.2 325,398 + SM_b20322 0.28 +0.6 325,566 + SM_b20322 0.56 -0.9 325,651 - SM_b20322 0.70 -2.2 325,652 + SM_b20322 0.70 -1.1 325,652 + SM_b20322 0.70 +0.0 325,652 + SM_b20322 0.70 -0.2 325,911 - -0.5
Or see this region's nucleotide sequence