Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20198

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20196 and SM_b20197 are separated by 11 nucleotidesSM_b20197 and SM_b20198 are separated by 41 nucleotidesSM_b20198 and SM_b20199 are separated by 32 nucleotides SM_b20196: SM_b20196 - CbbX protein, at 204,389 to 205,324 _b20196 SM_b20197: SM_b20197 - ribulose-1,5-bisphosphate carboxylase small subunit (EC 4.1.1.39) (from data), at 205,336 to 205,725 _b20197 SM_b20198: SM_b20198 - ribulose bisophosphate carboxylase, at 205,767 to 207,227 _b20198 SM_b20199: SM_b20199 - fructose-1,6-bisphosphate aldolase, at 207,260 to 208,339 _b20199 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 204.777 kb on + strand, within SM_b20196at 204.885 kb on + strand, within SM_b20196at 204.886 kb on - strand, within SM_b20196at 204.886 kb on - strand, within SM_b20196at 204.888 kb on + strand, within SM_b20196at 204.889 kb on - strand, within SM_b20196at 204.889 kb on - strand, within SM_b20196at 204.964 kb on + strand, within SM_b20196at 204.965 kb on - strand, within SM_b20196at 204.966 kb on + strand, within SM_b20196at 205.020 kb on + strand, within SM_b20196at 205.020 kb on + strand, within SM_b20196at 205.100 kb on - strand, within SM_b20196at 205.100 kb on - strand, within SM_b20196at 205.356 kb on + strandat 205.356 kb on + strandat 205.356 kb on + strandat 205.356 kb on + strandat 205.357 kb on - strandat 205.357 kb on - strandat 205.357 kb on - strandat 205.357 kb on - strandat 205.357 kb on - strandat 205.357 kb on - strandat 205.358 kb on + strandat 205.358 kb on + strandat 205.359 kb on - strandat 205.489 kb on - strand, within SM_b20197at 205.490 kb on + strand, within SM_b20197at 205.490 kb on + strand, within SM_b20197at 205.490 kb on + strand, within SM_b20197at 205.490 kb on + strand, within SM_b20197at 205.490 kb on + strand, within SM_b20197at 205.615 kb on - strand, within SM_b20197at 205.652 kb on + strand, within SM_b20197at 205.720 kb on - strandat 206.026 kb on - strand, within SM_b20198at 206.026 kb on - strand, within SM_b20198at 206.185 kb on + strand, within SM_b20198at 206.186 kb on - strand, within SM_b20198at 206.189 kb on - strand, within SM_b20198at 206.318 kb on + strand, within SM_b20198at 206.320 kb on + strand, within SM_b20198at 206.321 kb on - strand, within SM_b20198at 206.503 kb on + strand, within SM_b20198at 206.503 kb on + strand, within SM_b20198at 206.504 kb on - strand, within SM_b20198at 206.560 kb on + strand, within SM_b20198at 206.561 kb on - strand, within SM_b20198at 206.566 kb on + strand, within SM_b20198at 206.567 kb on - strand, within SM_b20198at 206.665 kb on + strand, within SM_b20198at 206.666 kb on - strand, within SM_b20198at 206.666 kb on - strand, within SM_b20198at 206.666 kb on - strand, within SM_b20198at 206.666 kb on - strand, within SM_b20198at 206.788 kb on + strand, within SM_b20198at 206.920 kb on + strand, within SM_b20198at 206.929 kb on + strand, within SM_b20198at 206.930 kb on - strand, within SM_b20198at 207.133 kb on + strandat 207.133 kb on + strandat 207.133 kb on + strandat 207.227 kb on + strandat 207.227 kb on + strandat 207.227 kb on + strandat 207.230 kb on + strandat 207.548 kb on + strand, within SM_b20199at 207.549 kb on - strand, within SM_b20199at 207.549 kb on - strand, within SM_b20199at 207.549 kb on - strand, within SM_b20199at 207.731 kb on - strand, within SM_b20199at 207.739 kb on - strand, within SM_b20199at 207.957 kb on - strand, within SM_b20199at 207.979 kb on + strand, within SM_b20199at 207.979 kb on + strand, within SM_b20199at 207.981 kb on + strand, within SM_b20199at 207.982 kb on - strand, within SM_b20199at 208.122 kb on + strand, within SM_b20199

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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204,777 + SM_b20196 0.41 +0.8
204,885 + SM_b20196 0.53 +0.7
204,886 - SM_b20196 0.53 -2.8
204,886 - SM_b20196 0.53 +0.1
204,888 + SM_b20196 0.53 +0.2
204,889 - SM_b20196 0.53 -0.5
204,889 - SM_b20196 0.53 -2.2
204,964 + SM_b20196 0.61 -0.4
204,965 - SM_b20196 0.62 -0.2
204,966 + SM_b20196 0.62 +2.3
205,020 + SM_b20196 0.67 -3.3
205,020 + SM_b20196 0.67 +1.0
205,100 - SM_b20196 0.76 -1.8
205,100 - SM_b20196 0.76 +2.9
205,356 + -0.3
205,356 + -0.6
205,356 + -1.2
205,356 + -0.3
205,357 - +3.6
205,357 - +0.4
205,357 - -1.1
205,357 - -1.0
205,357 - +0.6
205,357 - -2.2
205,358 + -1.2
205,358 + +1.4
205,359 - -0.3
205,489 - SM_b20197 0.39 +0.4
205,490 + SM_b20197 0.39 -0.9
205,490 + SM_b20197 0.39 -1.3
205,490 + SM_b20197 0.39 -0.7
205,490 + SM_b20197 0.39 +0.5
205,490 + SM_b20197 0.39 -1.4
205,615 - SM_b20197 0.72 +0.8
205,652 + SM_b20197 0.81 +0.3
205,720 - -0.3
206,026 - SM_b20198 0.18 -1.1
206,026 - SM_b20198 0.18 -0.4
206,185 + SM_b20198 0.29 -0.0
206,186 - SM_b20198 0.29 +0.1
206,189 - SM_b20198 0.29 +0.4
206,318 + SM_b20198 0.38 -2.3
206,320 + SM_b20198 0.38 -1.6
206,321 - SM_b20198 0.38 -2.7
206,503 + SM_b20198 0.50 +0.4
206,503 + SM_b20198 0.50 -0.1
206,504 - SM_b20198 0.50 +0.3
206,560 + SM_b20198 0.54 +1.6
206,561 - SM_b20198 0.54 -0.4
206,566 + SM_b20198 0.55 -2.7
206,567 - SM_b20198 0.55 +0.4
206,665 + SM_b20198 0.61 -1.7
206,666 - SM_b20198 0.62 -0.6
206,666 - SM_b20198 0.62 -1.5
206,666 - SM_b20198 0.62 +0.1
206,666 - SM_b20198 0.62 -1.7
206,788 + SM_b20198 0.70 -0.2
206,920 + SM_b20198 0.79 -0.0
206,929 + SM_b20198 0.80 -0.5
206,930 - SM_b20198 0.80 -1.1
207,133 + -3.6
207,133 + -0.7
207,133 + +0.2
207,227 + -0.3
207,227 + +0.2
207,227 + -2.7
207,230 + +0.4
207,548 + SM_b20199 0.27 +0.4
207,549 - SM_b20199 0.27 +0.4
207,549 - SM_b20199 0.27 +1.6
207,549 - SM_b20199 0.27 +0.7
207,731 - SM_b20199 0.44 -0.5
207,739 - SM_b20199 0.44 -0.1
207,957 - SM_b20199 0.65 -0.3
207,979 + SM_b20199 0.67 +1.7
207,979 + SM_b20199 0.67 +0.7
207,981 + SM_b20199 0.67 -0.2
207,982 - SM_b20199 0.67 +0.5
208,122 + SM_b20199 0.80 +0.5

Or see this region's nucleotide sequence