Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20178 and SM_b20179 are separated by 1 nucleotides SM_b20179 and SM_b20180 are separated by 3 nucleotides SM_b20180 and SM_b20181 are separated by 54 nucleotides
SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762
_b20178
SM_b20179: SM_b20179 - hypothetical protein, at 196,764 to 197,738
_b20179
SM_b20180: SM_b20180 - hypothetical protein, at 197,742 to 198,221
_b20180
SM_b20181: SM_b20181 - ABC transporter substrate-binding protein, at 198,276 to 199,247
_b20181
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.794 kb on + strand, within SM_b20178 at 195.795 kb on - strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.314 kb on - strand, within SM_b20178 at 196.466 kb on + strand, within SM_b20178 at 196.467 kb on - strand, within SM_b20178 at 196.467 kb on - strand, within SM_b20178 at 196.686 kb on - strand at 196.686 kb on - strand at 196.760 kb on + strand at 196.761 kb on - strand at 196.962 kb on + strand, within SM_b20179 at 196.963 kb on - strand, within SM_b20179 at 197.013 kb on + strand, within SM_b20179 at 197.014 kb on - strand at 197.016 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.219 kb on + strand, within SM_b20179 at 197.220 kb on - strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.238 kb on - strand, within SM_b20179 at 197.340 kb on + strand, within SM_b20179 at 197.341 kb on - strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.948 kb on + strand, within SM_b20180 at 197.967 kb on + strand, within SM_b20180 at 197.968 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 198.071 kb on - strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.400 kb on + strand, within SM_b20181 at 198.401 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.711 kb on + strand, within SM_b20181
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 195,794 + SM_b20178 0.18 -1.3 195,795 - SM_b20178 0.19 +0.1 195,900 + SM_b20178 0.27 +0.9 195,900 + SM_b20178 0.27 +0.6 195,901 - SM_b20178 0.27 -1.2 195,901 - SM_b20178 0.27 -3.1 195,901 - SM_b20178 0.27 -0.1 196,313 + SM_b20178 0.62 -0.0 196,313 + SM_b20178 0.62 -1.9 196,314 - SM_b20178 0.62 -0.1 196,466 + SM_b20178 0.75 +1.3 196,467 - SM_b20178 0.75 -1.1 196,467 - SM_b20178 0.75 -0.7 196,686 - +2.3 196,686 - +0.9 196,760 + +0.3 196,761 - +2.5 196,962 + SM_b20179 0.20 -0.0 196,963 - SM_b20179 0.20 -1.8 197,013 + SM_b20179 0.26 -1.2 197,014 - -0.7 197,016 - SM_b20179 0.26 +1.1 197,089 - SM_b20179 0.33 -0.3 197,089 - SM_b20179 0.33 -1.7 197,147 - SM_b20179 0.39 -0.1 197,147 - SM_b20179 0.39 +1.8 197,219 + SM_b20179 0.47 -0.5 197,220 - SM_b20179 0.47 -2.9 197,237 + SM_b20179 0.49 -0.3 197,237 + SM_b20179 0.49 -0.3 197,237 + SM_b20179 0.49 -1.6 197,238 - SM_b20179 0.49 -0.1 197,340 + SM_b20179 0.59 -1.3 197,341 - SM_b20179 0.59 +0.4 197,562 + SM_b20179 0.82 -0.1 197,562 + SM_b20179 0.82 -0.1 197,562 + SM_b20179 0.82 -1.7 197,948 + SM_b20180 0.43 -0.7 197,967 + SM_b20180 0.47 -1.2 197,968 - SM_b20180 0.47 -2.0 197,971 - SM_b20180 0.48 -0.3 197,971 - SM_b20180 0.48 -0.4 197,971 - SM_b20180 0.48 +1.1 198,071 - SM_b20180 0.69 -0.6 198,159 + SM_b20180 0.87 +0.9 198,159 + SM_b20180 0.87 +0.9 198,159 + SM_b20180 0.87 -0.5 198,160 - SM_b20180 0.87 -0.9 198,160 - SM_b20180 0.87 -2.4 198,160 - SM_b20180 0.87 +1.0 198,400 + SM_b20181 0.13 -1.3 198,401 - SM_b20181 0.13 -3.7 198,568 - SM_b20181 0.30 +0.3 198,568 - SM_b20181 0.30 -1.4 198,711 + SM_b20181 0.45 -0.2
Or see this region's nucleotide sequence