Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20155 and SM_b20156 overlap by 1 nucleotides SM_b20156 and SM_b20157 are separated by 41 nucleotides
SM_b20155: SM_b20155 - ABC transporter permease, at 172,249 to 174,099
_b20155
SM_b20156: SM_b20156 - ABC transporter ATP-binding protein, at 174,099 to 175,232
_b20156
SM_b20157: SM_b20157 - ABC transporter substrate-binding protein, at 175,274 to 176,398
_b20157
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 173.157 kb on - strand, within SM_b20155 at 173.395 kb on + strand, within SM_b20155 at 173.507 kb on + strand, within SM_b20155 at 173.539 kb on + strand, within SM_b20155 at 173.605 kb on + strand, within SM_b20155 at 173.606 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.639 kb on - strand, within SM_b20155 at 173.684 kb on - strand, within SM_b20155 at 173.915 kb on + strand at 173.915 kb on + strand at 173.915 kb on + strand at 173.959 kb on + strand at 173.960 kb on - strand at 173.980 kb on + strand at 173.981 kb on - strand at 174.035 kb on - strand at 174.136 kb on - strand at 174.136 kb on - strand at 174.136 kb on - strand at 174.372 kb on + strand, within SM_b20156 at 174.372 kb on + strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.373 kb on - strand, within SM_b20156 at 174.658 kb on + strand, within SM_b20156 at 174.659 kb on - strand, within SM_b20156 at 174.662 kb on + strand, within SM_b20156 at 174.662 kb on + strand, within SM_b20156 at 174.663 kb on - strand, within SM_b20156 at 174.663 kb on - strand, within SM_b20156 at 174.666 kb on + strand, within SM_b20156 at 174.786 kb on + strand, within SM_b20156 at 174.786 kb on + strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.787 kb on - strand, within SM_b20156 at 174.844 kb on + strand at 174.844 kb on + strand, within SM_b20156 at 174.844 kb on + strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.845 kb on - strand, within SM_b20156 at 174.898 kb on - strand, within SM_b20156 at 174.966 kb on + strand, within SM_b20156 at 175.169 kb on - strand at 175.219 kb on + strand at 175.224 kb on + strand at 175.225 kb on - strand at 175.273 kb on + strand at 175.274 kb on - strand at 175.328 kb on + strand at 175.329 kb on - strand at 175.418 kb on + strand, within SM_b20157 at 175.419 kb on - strand, within SM_b20157 at 175.470 kb on - strand, within SM_b20157 at 175.712 kb on + strand, within SM_b20157 at 175.713 kb on - strand, within SM_b20157 at 175.717 kb on + strand, within SM_b20157 at 175.750 kb on + strand, within SM_b20157 at 175.751 kb on - strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.820 kb on + strand, within SM_b20157 at 175.821 kb on - strand, within SM_b20157 at 175.821 kb on - strand, within SM_b20157 at 175.877 kb on + strand, within SM_b20157 at 175.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 173,157 - SM_b20155 0.49 +1.6 173,395 + SM_b20155 0.62 +1.1 173,507 + SM_b20155 0.68 -3.4 173,539 + SM_b20155 0.70 -0.7 173,605 + SM_b20155 0.73 +1.7 173,606 - SM_b20155 0.73 -0.8 173,639 - SM_b20155 0.75 -3.0 173,639 - SM_b20155 0.75 +0.8 173,639 - SM_b20155 0.75 -0.6 173,684 - SM_b20155 0.78 +0.2 173,915 + -0.9 173,915 + -0.8 173,915 + -1.0 173,959 + -1.3 173,960 - +2.8 173,980 + -0.8 173,981 - -1.3 174,035 - +0.0 174,136 - -2.0 174,136 - -0.7 174,136 - +2.3 174,372 + SM_b20156 0.24 +3.0 174,372 + SM_b20156 0.24 +0.7 174,373 - SM_b20156 0.24 -1.0 174,373 - SM_b20156 0.24 -0.5 174,373 - SM_b20156 0.24 -0.4 174,373 - SM_b20156 0.24 -1.3 174,373 - SM_b20156 0.24 +1.8 174,658 + SM_b20156 0.49 +0.8 174,659 - SM_b20156 0.49 -0.5 174,662 + SM_b20156 0.50 -0.4 174,662 + SM_b20156 0.50 -0.7 174,663 - SM_b20156 0.50 -0.1 174,663 - SM_b20156 0.50 +0.8 174,666 + SM_b20156 0.50 -2.4 174,786 + SM_b20156 0.61 +0.8 174,786 + SM_b20156 0.61 +0.2 174,787 - SM_b20156 0.61 +0.3 174,787 - SM_b20156 0.61 -0.2 174,787 - SM_b20156 0.61 -0.1 174,844 + +0.3 174,844 + SM_b20156 0.66 -0.5 174,844 + SM_b20156 0.66 -0.6 174,845 - SM_b20156 0.66 +0.1 174,845 - SM_b20156 0.66 +0.1 174,845 - SM_b20156 0.66 -0.3 174,845 - SM_b20156 0.66 -1.1 174,898 - SM_b20156 0.70 -1.5 174,966 + SM_b20156 0.76 -0.3 175,169 - +1.0 175,219 + +0.2 175,224 + -1.2 175,225 - +1.8 175,273 + -0.6 175,274 - -0.0 175,328 + -1.8 175,329 - +1.0 175,418 + SM_b20157 0.13 +5.2 175,419 - SM_b20157 0.13 -1.0 175,470 - SM_b20157 0.17 +0.7 175,712 + SM_b20157 0.39 +0.2 175,713 - SM_b20157 0.39 -2.0 175,717 + SM_b20157 0.39 -0.5 175,750 + SM_b20157 0.42 -1.0 175,751 - SM_b20157 0.42 -3.0 175,820 + SM_b20157 0.49 +1.4 175,820 + SM_b20157 0.49 -1.4 175,820 + SM_b20157 0.49 -0.5 175,820 + SM_b20157 0.49 +0.1 175,821 - SM_b20157 0.49 -0.5 175,821 - SM_b20157 0.49 -1.2 175,877 + SM_b20157 0.54 -0.2 175,889 + +3.3
Or see this region's nucleotide sequence