Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20107 and SM_b20108 are separated by 123 nucleotides SM_b20108 and SM_b20109 are separated by 72 nucleotides SM_b20109 and SM_b20110 overlap by 4 nucleotides
SM_b20107: SM_b20107 - hypothetical protein, at 117,623 to 118,579
_b20107
SM_b20108: SM_b20108 - peptide ABC transporter substrate-binding protein, at 118,703 to 120,211
_b20108
SM_b20109: SM_b20109 - peptide ABC transporter permease, at 120,284 to 121,207
_b20109
SM_b20110: SM_b20110 - oligopeptide ABC transporter permease, at 121,204 to 122,151
_b20110
Position (kb) 118
119
120
121 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 117.792 kb on - strand, within SM_b20107 at 117.792 kb on - strand, within SM_b20107 at 117.867 kb on + strand, within SM_b20107 at 117.868 kb on - strand, within SM_b20107 at 117.868 kb on - strand, within SM_b20107 at 118.037 kb on + strand, within SM_b20107 at 118.055 kb on + strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.056 kb on - strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.115 kb on + strand, within SM_b20107 at 118.116 kb on - strand, within SM_b20107 at 118.167 kb on + strand, within SM_b20107 at 118.168 kb on - strand, within SM_b20107 at 118.253 kb on + strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.254 kb on - strand, within SM_b20107 at 118.256 kb on - strand, within SM_b20107 at 118.256 kb on - strand, within SM_b20107 at 118.303 kb on + strand, within SM_b20107 at 118.303 kb on + strand, within SM_b20107 at 118.646 kb on - strand at 118.646 kb on - strand at 118.798 kb on - strand at 119.252 kb on + strand, within SM_b20108 at 119.252 kb on + strand, within SM_b20108 at 119.252 kb on + strand, within SM_b20108 at 119.253 kb on - strand, within SM_b20108 at 119.253 kb on - strand, within SM_b20108 at 119.306 kb on + strand, within SM_b20108 at 119.306 kb on + strand, within SM_b20108 at 119.307 kb on - strand, within SM_b20108 at 119.342 kb on + strand, within SM_b20108 at 119.342 kb on + strand, within SM_b20108 at 119.343 kb on - strand, within SM_b20108 at 119.343 kb on - strand, within SM_b20108 at 119.456 kb on + strand, within SM_b20108 at 119.657 kb on + strand, within SM_b20108 at 119.657 kb on + strand, within SM_b20108 at 119.657 kb on + strand, within SM_b20108 at 119.657 kb on + strand, within SM_b20108 at 119.657 kb on + strand, within SM_b20108 at 119.657 kb on + strand, within SM_b20108 at 119.657 kb on + strand, within SM_b20108 at 119.657 kb on + strand, within SM_b20108 at 119.658 kb on - strand, within SM_b20108 at 119.658 kb on - strand, within SM_b20108 at 119.658 kb on - strand, within SM_b20108 at 119.824 kb on - strand, within SM_b20108 at 119.855 kb on + strand, within SM_b20108 at 119.856 kb on - strand, within SM_b20108 at 119.920 kb on + strand, within SM_b20108 at 119.921 kb on - strand, within SM_b20108 at 119.954 kb on + strand, within SM_b20108 at 119.954 kb on + strand, within SM_b20108 at 119.972 kb on + strand, within SM_b20108 at 119.973 kb on - strand, within SM_b20108 at 120.265 kb on - strand at 120.370 kb on + strand at 120.386 kb on + strand, within SM_b20109 at 120.393 kb on - strand, within SM_b20109 at 120.482 kb on + strand, within SM_b20109 at 120.483 kb on - strand, within SM_b20109 at 120.891 kb on - strand, within SM_b20109 at 120.891 kb on - strand, within SM_b20109 at 121.156 kb on - strand at 121.166 kb on + strand at 121.188 kb on + strand at 121.188 kb on + strand at 121.189 kb on - strand at 121.189 kb on - strand at 121.189 kb on - strand at 121.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 117,792 - SM_b20107 0.18 -0.4 117,792 - SM_b20107 0.18 +0.7 117,867 + SM_b20107 0.25 -2.1 117,868 - SM_b20107 0.26 +1.7 117,868 - SM_b20107 0.26 +0.3 118,037 + SM_b20107 0.43 -0.2 118,055 + SM_b20107 0.45 -0.6 118,056 - SM_b20107 0.45 -1.8 118,056 - SM_b20107 0.45 -0.2 118,056 - SM_b20107 0.45 -1.3 118,056 - SM_b20107 0.45 +5.6 118,115 + SM_b20107 0.51 -4.5 118,115 + SM_b20107 0.51 +0.8 118,115 + SM_b20107 0.51 +0.4 118,115 + SM_b20107 0.51 +1.3 118,116 - SM_b20107 0.52 -0.5 118,167 + SM_b20107 0.57 -0.5 118,168 - SM_b20107 0.57 +0.5 118,253 + SM_b20107 0.66 -1.9 118,254 - SM_b20107 0.66 -1.6 118,254 - SM_b20107 0.66 +1.3 118,254 - SM_b20107 0.66 +0.0 118,256 - SM_b20107 0.66 +0.3 118,256 - SM_b20107 0.66 +0.2 118,303 + SM_b20107 0.71 +1.6 118,303 + SM_b20107 0.71 -1.4 118,646 - +0.3 118,646 - -0.7 118,798 - +0.0 119,252 + SM_b20108 0.36 +0.2 119,252 + SM_b20108 0.36 +0.1 119,252 + SM_b20108 0.36 -1.4 119,253 - SM_b20108 0.36 +0.1 119,253 - SM_b20108 0.36 -0.9 119,306 + SM_b20108 0.40 +0.6 119,306 + SM_b20108 0.40 +2.0 119,307 - SM_b20108 0.40 +1.0 119,342 + SM_b20108 0.42 -0.3 119,342 + SM_b20108 0.42 +2.6 119,343 - SM_b20108 0.42 -0.6 119,343 - SM_b20108 0.42 -2.0 119,456 + SM_b20108 0.50 -0.7 119,657 + SM_b20108 0.63 +2.4 119,657 + SM_b20108 0.63 -0.7 119,657 + SM_b20108 0.63 +0.7 119,657 + SM_b20108 0.63 +2.0 119,657 + SM_b20108 0.63 -0.6 119,657 + SM_b20108 0.63 -1.9 119,657 + SM_b20108 0.63 -1.1 119,657 + SM_b20108 0.63 +0.2 119,658 - SM_b20108 0.63 +0.9 119,658 - SM_b20108 0.63 +0.3 119,658 - SM_b20108 0.63 +0.4 119,824 - SM_b20108 0.74 -0.7 119,855 + SM_b20108 0.76 -2.4 119,856 - SM_b20108 0.76 -1.2 119,920 + SM_b20108 0.81 -0.0 119,921 - SM_b20108 0.81 +0.8 119,954 + SM_b20108 0.83 +1.0 119,954 + SM_b20108 0.83 +0.1 119,972 + SM_b20108 0.84 -0.8 119,973 - SM_b20108 0.84 +2.4 120,265 - -0.2 120,370 + +1.4 120,386 + SM_b20109 0.11 -0.3 120,393 - SM_b20109 0.12 +0.3 120,482 + SM_b20109 0.21 -0.2 120,483 - SM_b20109 0.22 -0.8 120,891 - SM_b20109 0.66 +0.4 120,891 - SM_b20109 0.66 -0.3 121,156 - -0.7 121,166 + -1.9 121,188 + +1.1 121,188 + -0.6 121,189 - +0.1 121,189 - -3.1 121,189 - +1.3 121,189 - +1.4
Or see this region's nucleotide sequence