Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20088 and SM_b20089 are separated by 18 nucleotides SM_b20089 and SM_b20090 are separated by 3 nucleotides SM_b20090 and SM_b20091 are separated by 115 nucleotides SM_b20091 and SM_b20092 are separated by 85 nucleotides
SM_b20088: SM_b20088 - hypothetical protein, at 96,557 to 98,533
_b20088
SM_b20089: SM_b20089 - hypothetical protein, at 98,552 to 98,875
_b20089
SM_b20090: SM_b20090 - hypothetical protein, at 98,879 to 99,070
_b20090
SM_b20091: SM_b20091 - hypothetical protein, at 99,186 to 99,692
_b20091
SM_b20092: SM_b20092 - hypothetical protein, at 99,778 to 100,536
_b20092
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 97.595 kb on - strand, within SM_b20088 at 97.595 kb on - strand, within SM_b20088 at 97.631 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.646 kb on + strand, within SM_b20088 at 97.648 kb on + strand, within SM_b20088 at 97.648 kb on + strand, within SM_b20088 at 97.649 kb on - strand, within SM_b20088 at 97.651 kb on + strand, within SM_b20088 at 97.651 kb on + strand, within SM_b20088 at 97.730 kb on + strand, within SM_b20088 at 97.769 kb on + strand, within SM_b20088 at 97.931 kb on + strand, within SM_b20088 at 97.934 kb on + strand, within SM_b20088 at 97.934 kb on + strand, within SM_b20088 at 97.935 kb on - strand, within SM_b20088 at 97.946 kb on + strand, within SM_b20088 at 97.946 kb on + strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.947 kb on - strand, within SM_b20088 at 97.950 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 97.988 kb on - strand, within SM_b20088 at 98.286 kb on + strand, within SM_b20088 at 98.287 kb on - strand, within SM_b20088 at 98.405 kb on + strand at 98.493 kb on + strand at 98.493 kb on + strand at 98.494 kb on - strand at 98.494 kb on - strand at 98.553 kb on + strand at 98.554 kb on - strand at 98.554 kb on - strand at 98.800 kb on - strand, within SM_b20089 at 98.800 kb on - strand, within SM_b20089 at 98.853 kb on + strand at 98.854 kb on - strand at 98.854 kb on - strand at 98.855 kb on + strand at 98.856 kb on - strand at 98.880 kb on + strand at 99.180 kb on + strand at 99.192 kb on - strand at 99.404 kb on + strand, within SM_b20091 at 99.405 kb on - strand, within SM_b20091 at 99.489 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.491 kb on + strand, within SM_b20091 at 99.492 kb on - strand, within SM_b20091 at 99.492 kb on - strand, within SM_b20091 at 99.503 kb on + strand, within SM_b20091 at 99.504 kb on - strand, within SM_b20091 at 99.507 kb on + strand, within SM_b20091 at 99.779 kb on + strand at 99.780 kb on - strand at 99.780 kb on - strand at 99.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 97,595 - SM_b20088 0.53 -0.8 97,595 - SM_b20088 0.53 +2.8 97,631 + SM_b20088 0.54 -1.8 97,646 + SM_b20088 0.55 +0.9 97,646 + SM_b20088 0.55 +2.3 97,646 + SM_b20088 0.55 -0.3 97,648 + SM_b20088 0.55 -0.5 97,648 + SM_b20088 0.55 +4.6 97,649 - SM_b20088 0.55 +0.2 97,651 + SM_b20088 0.55 -2.2 97,651 + SM_b20088 0.55 +0.5 97,730 + SM_b20088 0.59 +0.8 97,769 + SM_b20088 0.61 -1.0 97,931 + SM_b20088 0.69 +0.7 97,934 + SM_b20088 0.70 -1.9 97,934 + SM_b20088 0.70 -0.3 97,935 - SM_b20088 0.70 +0.0 97,946 + SM_b20088 0.70 +0.7 97,946 + SM_b20088 0.70 +0.2 97,947 - SM_b20088 0.70 -0.3 97,947 - SM_b20088 0.70 -0.1 97,947 - SM_b20088 0.70 +2.3 97,947 - SM_b20088 0.70 +0.4 97,950 - SM_b20088 0.70 -0.6 97,988 - SM_b20088 0.72 -0.6 97,988 - SM_b20088 0.72 -0.6 97,988 - SM_b20088 0.72 -0.2 98,286 + SM_b20088 0.87 +0.6 98,287 - SM_b20088 0.88 -0.7 98,405 + -2.1 98,493 + +0.6 98,493 + -0.1 98,494 - +0.6 98,494 - -0.3 98,553 + -0.4 98,554 - -0.0 98,554 - -1.3 98,800 - SM_b20089 0.77 +0.3 98,800 - SM_b20089 0.77 -0.3 98,853 + -1.4 98,854 - -1.0 98,854 - -1.9 98,855 + +0.5 98,856 - -0.1 98,880 + -0.5 99,180 + -0.5 99,192 - -1.6 99,404 + SM_b20091 0.43 -0.6 99,405 - SM_b20091 0.43 -2.4 99,489 + SM_b20091 0.60 +0.3 99,491 + SM_b20091 0.60 -2.7 99,491 + SM_b20091 0.60 -1.1 99,491 + SM_b20091 0.60 -0.7 99,492 - SM_b20091 0.60 -1.0 99,492 - SM_b20091 0.60 -0.8 99,503 + SM_b20091 0.63 +0.3 99,504 - SM_b20091 0.63 -0.2 99,507 + SM_b20091 0.63 -0.6 99,779 + +2.3 99,780 - +0.6 99,780 - -0.3 99,780 - -1.0
Or see this region's nucleotide sequence