Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20037 and SM_b20038 are separated by 216 nucleotides SM_b20038 and SM_b20039 are separated by 96 nucleotides SM_b20039 and SM_b20040 are separated by 81 nucleotides
SM_b20037: SM_b20037 - shikimate 5-dehydrogenase, at 47,745 to 48,605
_b20037
SM_b20038: SM_b20038 - hypothetical protein, at 48,822 to 49,049
_b20038
SM_b20039: SM_b20039 - transcriptional regulator, at 49,146 to 50,570
_b20039
SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512
_b20040
Position (kb)
49
50
51 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 48.184 kb on - strand, within SM_b20037 at 48.184 kb on - strand, within SM_b20037 at 48.373 kb on - strand, within SM_b20037 at 48.436 kb on - strand, within SM_b20037 at 48.646 kb on + strand at 48.646 kb on + strand at 48.791 kb on - strand at 48.791 kb on - strand at 48.799 kb on + strand at 48.800 kb on - strand at 48.804 kb on + strand at 48.805 kb on - strand at 48.805 kb on - strand at 48.805 kb on - strand at 49.143 kb on - strand at 49.143 kb on - strand at 49.147 kb on + strand at 49.147 kb on + strand at 49.456 kb on + strand, within SM_b20039 at 49.618 kb on - strand, within SM_b20039 at 49.618 kb on - strand, within SM_b20039 at 49.800 kb on - strand, within SM_b20039 at 49.804 kb on + strand, within SM_b20039 at 49.804 kb on + strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.805 kb on - strand, within SM_b20039 at 49.868 kb on + strand, within SM_b20039 at 49.868 kb on + strand, within SM_b20039 at 49.870 kb on + strand, within SM_b20039 at 49.870 kb on + strand, within SM_b20039 at 49.871 kb on - strand, within SM_b20039 at 49.871 kb on - strand, within SM_b20039 at 49.927 kb on + strand, within SM_b20039 at 49.927 kb on + strand, within SM_b20039 at 49.928 kb on - strand, within SM_b20039 at 50.020 kb on - strand, within SM_b20039 at 50.020 kb on - strand, within SM_b20039 at 50.108 kb on - strand, within SM_b20039 at 50.388 kb on + strand, within SM_b20039 at 50.651 kb on + strand at 50.753 kb on + strand, within SM_b20040 at 50.754 kb on - strand, within SM_b20040 at 50.898 kb on - strand, within SM_b20040 at 51.136 kb on + strand, within SM_b20040
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 48,184 - SM_b20037 0.51 -0.2 48,184 - SM_b20037 0.51 -0.4 48,373 - SM_b20037 0.73 +1.3 48,436 - SM_b20037 0.80 +0.5 48,646 + +0.5 48,646 + -0.5 48,791 - -1.0 48,791 - -3.0 48,799 + +0.4 48,800 - +0.2 48,804 + -0.9 48,805 - -0.6 48,805 - -0.4 48,805 - +0.2 49,143 - -0.6 49,143 - +0.1 49,147 + -0.1 49,147 + -1.5 49,456 + SM_b20039 0.22 +0.7 49,618 - SM_b20039 0.33 +0.3 49,618 - SM_b20039 0.33 +0.1 49,800 - SM_b20039 0.46 -1.1 49,804 + SM_b20039 0.46 -0.3 49,804 + SM_b20039 0.46 +0.2 49,805 - SM_b20039 0.46 -2.3 49,805 - SM_b20039 0.46 +0.5 49,805 - SM_b20039 0.46 -0.7 49,868 + SM_b20039 0.51 -1.3 49,868 + SM_b20039 0.51 -3.3 49,870 + SM_b20039 0.51 -1.7 49,870 + SM_b20039 0.51 -0.4 49,871 - SM_b20039 0.51 -0.4 49,871 - SM_b20039 0.51 +0.0 49,927 + SM_b20039 0.55 -1.2 49,927 + SM_b20039 0.55 -0.3 49,928 - SM_b20039 0.55 -3.7 50,020 - SM_b20039 0.61 -1.1 50,020 - SM_b20039 0.61 -1.7 50,108 - SM_b20039 0.68 +1.1 50,388 + SM_b20039 0.87 -0.1 50,651 + -0.4 50,753 + SM_b20040 0.12 +1.1 50,754 - SM_b20040 0.12 -0.2 50,898 - SM_b20040 0.29 -2.3 51,136 + SM_b20040 0.56 -1.3
Or see this region's nucleotide sequence