Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20024

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20023 and SM_b20024 are separated by 16 nucleotidesSM_b20024 and SM_b20025 are separated by 249 nucleotides SM_b20023: SM_b20023 - hypothetical protein, at 31,301 to 34,918 _b20023 SM_b20024: SM_b20024 - ribosomal large subunit pseudouridine synthase B, at 34,935 to 35,897 _b20024 SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124 _b20025 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 34.009 kb on - strand, within SM_b20023at 34.248 kb on + strand, within SM_b20023at 34.249 kb on - strand, within SM_b20023at 34.249 kb on - strand, within SM_b20023at 34.272 kb on + strand, within SM_b20023at 34.273 kb on - strand, within SM_b20023at 34.309 kb on - strand, within SM_b20023at 34.309 kb on - strand, within SM_b20023at 34.343 kb on + strand, within SM_b20023at 34.402 kb on - strand, within SM_b20023at 34.407 kb on + strand, within SM_b20023at 34.408 kb on - strand, within SM_b20023at 34.408 kb on - strand, within SM_b20023at 34.408 kb on - strand, within SM_b20023at 34.463 kb on + strand, within SM_b20023at 34.538 kb on + strand, within SM_b20023at 34.538 kb on + strand, within SM_b20023at 34.539 kb on - strand, within SM_b20023at 34.552 kb on - strand, within SM_b20023at 34.605 kb on + strandat 34.873 kb on + strandat 34.874 kb on - strandat 35.066 kb on + strand, within SM_b20024at 35.066 kb on + strand, within SM_b20024at 35.067 kb on - strand, within SM_b20024at 35.067 kb on - strand, within SM_b20024at 35.067 kb on - strand, within SM_b20024at 35.067 kb on - strand, within SM_b20024at 35.365 kb on - strand, within SM_b20024at 35.576 kb on - strand, within SM_b20024at 35.576 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.578 kb on - strand, within SM_b20024at 35.872 kb on - strandat 36.023 kb on + strandat 36.063 kb on - strandat 36.405 kb on + strand, within SM_b20025at 36.406 kb on - strand, within SM_b20025at 36.492 kb on + strand, within SM_b20025at 36.493 kb on - strand, within SM_b20025at 36.693 kb on + strand, within SM_b20025at 36.694 kb on - strand, within SM_b20025at 36.694 kb on - strand, within SM_b20025at 36.804 kb on + strand, within SM_b20025

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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34,009 - SM_b20023 0.75 +0.4
34,248 + SM_b20023 0.81 -0.5
34,249 - SM_b20023 0.81 -2.7
34,249 - SM_b20023 0.81 +0.8
34,272 + SM_b20023 0.82 -1.3
34,273 - SM_b20023 0.82 +0.8
34,309 - SM_b20023 0.83 +0.1
34,309 - SM_b20023 0.83 -0.9
34,343 + SM_b20023 0.84 +0.4
34,402 - SM_b20023 0.86 +2.3
34,407 + SM_b20023 0.86 -0.3
34,408 - SM_b20023 0.86 -0.3
34,408 - SM_b20023 0.86 -0.4
34,408 - SM_b20023 0.86 -0.1
34,463 + SM_b20023 0.87 -0.4
34,538 + SM_b20023 0.89 +0.2
34,538 + SM_b20023 0.89 +0.4
34,539 - SM_b20023 0.89 -0.8
34,552 - SM_b20023 0.90 +0.3
34,605 + -0.0
34,873 + +0.6
34,874 - +0.5
35,066 + SM_b20024 0.14 +0.3
35,066 + SM_b20024 0.14 -1.6
35,067 - SM_b20024 0.14 +0.8
35,067 - SM_b20024 0.14 -2.2
35,067 - SM_b20024 0.14 +0.6
35,067 - SM_b20024 0.14 -0.5
35,365 - SM_b20024 0.45 +3.6
35,576 - SM_b20024 0.67 -3.0
35,576 - SM_b20024 0.67 +0.8
35,578 - SM_b20024 0.67 -1.1
35,578 - SM_b20024 0.67 +0.2
35,578 - SM_b20024 0.67 +0.1
35,578 - SM_b20024 0.67 +0.6
35,578 - SM_b20024 0.67 -2.4
35,872 - +0.8
36,023 + +0.0
36,063 - -0.5
36,405 + SM_b20025 0.26 +0.1
36,406 - SM_b20025 0.26 +1.4
36,492 + SM_b20025 0.35 +0.7
36,493 - SM_b20025 0.35 -1.6
36,693 + SM_b20025 0.56 +0.3
36,694 - SM_b20025 0.56 -1.4
36,694 - SM_b20025 0.56 +0.8
36,804 + SM_b20025 0.67 +0.1

Or see this region's nucleotide sequence