Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_820 and Pf1N1B4_821 are separated by 212 nucleotides Pf1N1B4_821 and Pf1N1B4_822 are separated by 759 nucleotides
Pf1N1B4_820 - Glucose-selective porin OprB, at 938,142 to 939,479
_820
Pf1N1B4_821 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 939,692 to 942,100
_821
Pf1N1B4_822 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 942,860 to 945,277
_822
Position (kb) 939
940
941
942
943 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 938.718 kb on + strand, within Pf1N1B4_820 at 938.718 kb on + strand, within Pf1N1B4_820 at 938.719 kb on - strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.757 kb on + strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.758 kb on - strand, within Pf1N1B4_820 at 938.797 kb on - strand, within Pf1N1B4_820 at 938.934 kb on + strand, within Pf1N1B4_820 at 938.935 kb on - strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.937 kb on + strand, within Pf1N1B4_820 at 938.938 kb on - strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.940 kb on + strand, within Pf1N1B4_820 at 938.941 kb on - strand, within Pf1N1B4_820 at 938.941 kb on - strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.967 kb on + strand, within Pf1N1B4_820 at 938.968 kb on - strand, within Pf1N1B4_820 at 939.149 kb on + strand at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.153 kb on + strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.154 kb on - strand, within Pf1N1B4_820 at 939.174 kb on + strand, within Pf1N1B4_820 at 939.174 kb on + strand at 939.175 kb on - strand, within Pf1N1B4_820 at 939.352 kb on - strand at 939.354 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.402 kb on + strand at 939.403 kb on - strand at 939.403 kb on - strand at 939.403 kb on - strand at 939.477 kb on + strand at 939.477 kb on + strand at 939.478 kb on - strand at 939.478 kb on - strand at 939.478 kb on - strand at 939.527 kb on + strand at 939.613 kb on + strand at 939.613 kb on + strand at 939.613 kb on + strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.643 kb on + strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.644 kb on - strand at 939.664 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.668 kb on + strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.669 kb on - strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.691 kb on + strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.692 kb on - strand at 939.756 kb on + strand at 939.756 kb on + strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.757 kb on - strand at 939.759 kb on + strand at 939.760 kb on - strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.818 kb on + strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.819 kb on - strand at 939.821 kb on + strand at 939.821 kb on + strand at 939.919 kb on + strand at 940.244 kb on + strand, within Pf1N1B4_821 at 940.304 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.388 kb on + strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.389 kb on - strand, within Pf1N1B4_821 at 940.529 kb on + strand, within Pf1N1B4_821 at 940.742 kb on + strand, within Pf1N1B4_821 at 940.745 kb on + strand, within Pf1N1B4_821 at 940.745 kb on + strand, within Pf1N1B4_821 at 940.746 kb on - strand, within Pf1N1B4_821 at 940.746 kb on - strand, within Pf1N1B4_821 at 940.746 kb on - strand, within Pf1N1B4_821 at 940.931 kb on + strand, within Pf1N1B4_821 at 940.932 kb on - strand, within Pf1N1B4_821 at 940.963 kb on - strand, within Pf1N1B4_821 at 940.994 kb on + strand, within Pf1N1B4_821 at 940.994 kb on + strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 940.995 kb on - strand, within Pf1N1B4_821 at 941.237 kb on + strand, within Pf1N1B4_821 at 941.237 kb on + strand, within Pf1N1B4_821 at 941.237 kb on + strand, within Pf1N1B4_821 at 941.237 kb on + strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.238 kb on - strand, within Pf1N1B4_821 at 941.318 kb on + strand, within Pf1N1B4_821 at 941.318 kb on + strand, within Pf1N1B4_821 at 941.319 kb on - strand, within Pf1N1B4_821 at 941.525 kb on - strand, within Pf1N1B4_821 at 941.571 kb on - strand, within Pf1N1B4_821 at 941.571 kb on - strand, within Pf1N1B4_821 at 941.738 kb on + strand, within Pf1N1B4_821 at 941.909 kb on + strand at 941.921 kb on + strand at 941.993 kb on + strand at 941.993 kb on + strand at 941.994 kb on - strand at 941.994 kb on - strand at 941.994 kb on - strand at 941.994 kb on - strand at 942.017 kb on + strand at 942.017 kb on + strand at 942.017 kb on + strand at 942.017 kb on + strand at 942.017 kb on + strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.018 kb on - strand at 942.071 kb on + strand at 942.071 kb on + strand at 942.071 kb on + strand at 942.071 kb on + strand at 942.071 kb on + strand at 942.072 kb on - strand at 942.072 kb on - strand at 942.072 kb on - strand at 942.072 kb on - strand at 942.072 kb on - strand at 942.083 kb on + strand at 942.084 kb on - strand at 942.084 kb on - strand at 942.084 kb on - strand at 942.191 kb on + strand at 942.224 kb on + strand at 942.234 kb on + strand at 942.234 kb on + strand at 942.234 kb on + strand at 942.362 kb on + strand at 942.363 kb on - strand at 942.363 kb on - strand at 942.704 kb on + strand at 942.704 kb on + strand at 942.708 kb on + strand at 942.708 kb on + strand at 942.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 938,718 + Pf1N1B4_820 0.43 -0.9 938,718 + Pf1N1B4_820 0.43 +0.3 938,719 - Pf1N1B4_820 0.43 -2.7 938,757 + Pf1N1B4_820 0.46 +1.6 938,757 + Pf1N1B4_820 0.46 -1.1 938,757 + Pf1N1B4_820 0.46 -0.0 938,757 + Pf1N1B4_820 0.46 +0.7 938,758 - Pf1N1B4_820 0.46 -0.9 938,758 - Pf1N1B4_820 0.46 -0.9 938,758 - Pf1N1B4_820 0.46 +1.1 938,797 - Pf1N1B4_820 0.49 +0.5 938,934 + Pf1N1B4_820 0.59 -1.5 938,935 - Pf1N1B4_820 0.59 +1.5 938,937 + Pf1N1B4_820 0.59 -0.2 938,937 + Pf1N1B4_820 0.59 +0.4 938,937 + Pf1N1B4_820 0.59 -0.8 938,937 + Pf1N1B4_820 0.59 +0.7 938,937 + Pf1N1B4_820 0.59 -0.3 938,937 + Pf1N1B4_820 0.59 +1.1 938,938 - Pf1N1B4_820 0.59 +0.8 938,940 + Pf1N1B4_820 0.60 -0.3 938,940 + Pf1N1B4_820 0.60 +0.3 938,940 + Pf1N1B4_820 0.60 +0.4 938,940 + Pf1N1B4_820 0.60 -0.1 938,941 - Pf1N1B4_820 0.60 -0.3 938,941 - Pf1N1B4_820 0.60 +1.8 938,967 + Pf1N1B4_820 0.62 +1.3 938,967 + Pf1N1B4_820 0.62 +0.3 938,967 + Pf1N1B4_820 0.62 -0.3 938,967 + Pf1N1B4_820 0.62 +0.1 938,968 - Pf1N1B4_820 0.62 +0.6 939,149 + +0.1 939,153 + Pf1N1B4_820 0.76 -1.5 939,153 + Pf1N1B4_820 0.76 -0.2 939,153 + Pf1N1B4_820 0.76 -1.4 939,153 + Pf1N1B4_820 0.76 -0.6 939,153 + Pf1N1B4_820 0.76 +0.7 939,153 + Pf1N1B4_820 0.76 -1.0 939,153 + Pf1N1B4_820 0.76 -1.5 939,153 + Pf1N1B4_820 0.76 -0.7 939,153 + Pf1N1B4_820 0.76 +0.2 939,153 + Pf1N1B4_820 0.76 +2.7 939,153 + Pf1N1B4_820 0.76 -1.7 939,153 + Pf1N1B4_820 0.76 +1.1 939,153 + Pf1N1B4_820 0.76 -0.3 939,153 + Pf1N1B4_820 0.76 +0.4 939,154 - Pf1N1B4_820 0.76 +0.4 939,154 - Pf1N1B4_820 0.76 -1.5 939,154 - Pf1N1B4_820 0.76 -0.9 939,154 - Pf1N1B4_820 0.76 +0.1 939,154 - Pf1N1B4_820 0.76 -0.3 939,154 - Pf1N1B4_820 0.76 +0.8 939,154 - Pf1N1B4_820 0.76 +0.3 939,174 + Pf1N1B4_820 0.77 -0.2 939,174 + +0.1 939,175 - Pf1N1B4_820 0.77 +1.3 939,352 - +1.3 939,354 + -2.1 939,402 + +0.5 939,402 + -1.5 939,402 + -1.7 939,402 + -0.5 939,402 + +0.8 939,403 - +0.6 939,403 - -0.3 939,403 - +0.0 939,477 + +1.3 939,477 + +0.1 939,478 - -1.5 939,478 - +0.5 939,478 - -0.9 939,527 + +0.6 939,613 + -0.9 939,613 + -0.3 939,613 + -1.5 939,614 - +0.2 939,614 - -0.9 939,614 - -0.3 939,643 + +0.2 939,643 + -0.5 939,643 + -0.3 939,643 + +0.3 939,643 + +0.4 939,644 - -1.9 939,644 - -0.3 939,644 - -0.6 939,644 - +0.2 939,664 + +0.5 939,668 + -0.3 939,668 + +1.3 939,668 + -0.3 939,668 + +0.8 939,669 - +0.4 939,669 - -0.3 939,669 - -0.6 939,669 - +0.6 939,669 - -0.2 939,691 + -1.7 939,691 + -0.9 939,691 + +0.3 939,691 + +0.1 939,691 + -0.2 939,692 - -0.7 939,692 - +0.2 939,692 - +2.1 939,692 - +0.1 939,692 - -1.3 939,692 - +1.1 939,692 - +0.1 939,756 + +0.3 939,756 + +0.4 939,757 - +2.3 939,757 - +1.1 939,757 - +0.7 939,757 - -0.3 939,759 + +1.1 939,760 - +1.1 939,818 + -2.3 939,818 + -1.7 939,818 + +1.1 939,819 - +0.5 939,819 - +2.1 939,819 - -0.2 939,821 + +1.1 939,821 + +0.5 939,919 + -0.2 940,244 + Pf1N1B4_821 0.23 -0.4 940,304 + Pf1N1B4_821 0.25 +0.3 940,388 + Pf1N1B4_821 0.29 +1.1 940,388 + Pf1N1B4_821 0.29 +0.5 940,388 + Pf1N1B4_821 0.29 +1.5 940,388 + Pf1N1B4_821 0.29 +0.2 940,388 + Pf1N1B4_821 0.29 +0.6 940,388 + Pf1N1B4_821 0.29 +0.6 940,388 + Pf1N1B4_821 0.29 +0.7 940,388 + Pf1N1B4_821 0.29 +1.1 940,388 + Pf1N1B4_821 0.29 +0.3 940,389 - Pf1N1B4_821 0.29 +1.5 940,389 - Pf1N1B4_821 0.29 -0.2 940,389 - Pf1N1B4_821 0.29 +1.1 940,389 - Pf1N1B4_821 0.29 +0.8 940,389 - Pf1N1B4_821 0.29 -0.5 940,389 - Pf1N1B4_821 0.29 +0.6 940,389 - Pf1N1B4_821 0.29 -1.5 940,529 + Pf1N1B4_821 0.35 +0.4 940,742 + Pf1N1B4_821 0.44 +0.1 940,745 + Pf1N1B4_821 0.44 +1.1 940,745 + Pf1N1B4_821 0.44 +0.4 940,746 - Pf1N1B4_821 0.44 -0.5 940,746 - Pf1N1B4_821 0.44 -0.2 940,746 - Pf1N1B4_821 0.44 -2.3 940,931 + Pf1N1B4_821 0.51 +0.1 940,932 - Pf1N1B4_821 0.51 -0.2 940,963 - Pf1N1B4_821 0.53 -2.1 940,994 + Pf1N1B4_821 0.54 -0.2 940,994 + Pf1N1B4_821 0.54 +0.6 940,995 - Pf1N1B4_821 0.54 +0.3 940,995 - Pf1N1B4_821 0.54 -0.1 940,995 - Pf1N1B4_821 0.54 +1.0 940,995 - Pf1N1B4_821 0.54 -1.5 940,995 - Pf1N1B4_821 0.54 +0.5 941,237 + Pf1N1B4_821 0.64 +0.8 941,237 + Pf1N1B4_821 0.64 +0.4 941,237 + Pf1N1B4_821 0.64 +0.5 941,237 + Pf1N1B4_821 0.64 -0.9 941,238 - Pf1N1B4_821 0.64 -0.7 941,238 - Pf1N1B4_821 0.64 +0.6 941,238 - Pf1N1B4_821 0.64 -0.0 941,238 - +1.1 941,238 - Pf1N1B4_821 0.64 +1.1 941,238 - Pf1N1B4_821 0.64 -0.9 941,238 - Pf1N1B4_821 0.64 +0.1 941,238 - Pf1N1B4_821 0.64 +1.3 941,318 + Pf1N1B4_821 0.67 +1.5 941,318 + Pf1N1B4_821 0.67 -1.3 941,319 - Pf1N1B4_821 0.68 +0.1 941,525 - Pf1N1B4_821 0.76 +0.6 941,571 - Pf1N1B4_821 0.78 -1.3 941,571 - Pf1N1B4_821 0.78 -1.5 941,738 + Pf1N1B4_821 0.85 +0.8 941,909 + -0.5 941,921 + +0.6 941,993 + +1.1 941,993 + +0.3 941,994 - -0.2 941,994 - +0.7 941,994 - -0.1 941,994 - +1.9 942,017 + +0.5 942,017 + +1.2 942,017 + +0.1 942,017 + +0.1 942,017 + +0.1 942,018 - -2.3 942,018 - -0.1 942,018 - +1.1 942,018 - +1.8 942,018 - +0.1 942,018 - -1.7 942,018 - -1.3 942,071 + -0.5 942,071 + +2.8 942,071 + +1.1 942,071 + +1.3 942,071 + +0.8 942,072 - +0.1 942,072 - +0.7 942,072 - -0.5 942,072 - +0.1 942,072 - -0.2 942,083 + -0.9 942,084 - -1.3 942,084 - +0.1 942,084 - +0.6 942,191 + +1.3 942,224 + +1.1 942,234 + -0.5 942,234 + +0.6 942,234 + +0.1 942,362 + +0.0 942,363 - -0.2 942,363 - +0.7 942,704 + -0.4 942,704 + +0.0 942,708 + +0.1 942,708 + -0.9 942,708 + -1.9
Or see this region's nucleotide sequence