Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_813

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_812 and Pf1N1B4_813 are separated by 462 nucleotidesPf1N1B4_813 and Pf1N1B4_814 are separated by 514 nucleotides Pf1N1B4_812 - CFA/I fimbrial subunit C precursor, at 928,651 to 930,819 _812 Pf1N1B4_813 - hypothetical protein, at 931,282 to 931,776 _813 Pf1N1B4_814 - Transcriptional regulator, PadR family, at 932,291 to 932,872 _814 Position (kb) 931 932Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 930.350 kb on + strandat 930.350 kb on + strand, within Pf1N1B4_812at 930.350 kb on + strand, within Pf1N1B4_812at 930.351 kb on - strand, within Pf1N1B4_812at 930.351 kb on - strand, within Pf1N1B4_812at 930.351 kb on - strand, within Pf1N1B4_812at 930.351 kb on - strand, within Pf1N1B4_812at 930.541 kb on + strand, within Pf1N1B4_812at 930.541 kb on + strand, within Pf1N1B4_812at 930.541 kb on + strand, within Pf1N1B4_812at 930.541 kb on + strand, within Pf1N1B4_812at 930.541 kb on + strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.542 kb on - strand, within Pf1N1B4_812at 930.552 kb on - strand, within Pf1N1B4_812at 930.574 kb on + strand, within Pf1N1B4_812at 930.732 kb on - strandat 930.732 kb on - strandat 930.732 kb on - strandat 930.735 kb on - strandat 930.735 kb on - strandat 930.872 kb on + strandat 930.872 kb on + strandat 930.964 kb on + strandat 930.965 kb on - strandat 930.965 kb on - strandat 931.249 kb on + strandat 931.249 kb on + strandat 931.250 kb on - strandat 931.257 kb on + strandat 931.271 kb on + strandat 931.272 kb on - strandat 931.337 kb on + strand, within Pf1N1B4_813at 931.337 kb on + strand, within Pf1N1B4_813at 931.391 kb on + strand, within Pf1N1B4_813at 931.434 kb on + strand, within Pf1N1B4_813at 931.434 kb on + strand, within Pf1N1B4_813at 931.434 kb on + strand, within Pf1N1B4_813at 931.435 kb on - strand, within Pf1N1B4_813at 931.444 kb on + strand, within Pf1N1B4_813at 931.444 kb on + strand, within Pf1N1B4_813at 931.479 kb on + strand, within Pf1N1B4_813at 931.479 kb on + strand, within Pf1N1B4_813at 931.479 kb on + strandat 931.479 kb on + strand, within Pf1N1B4_813at 931.480 kb on - strand, within Pf1N1B4_813at 931.480 kb on - strand, within Pf1N1B4_813at 931.480 kb on - strand, within Pf1N1B4_813at 931.480 kb on - strand, within Pf1N1B4_813at 931.494 kb on - strand, within Pf1N1B4_813at 931.494 kb on - strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.556 kb on + strand, within Pf1N1B4_813at 931.557 kb on - strand, within Pf1N1B4_813at 931.646 kb on + strand, within Pf1N1B4_813at 931.646 kb on + strand, within Pf1N1B4_813at 931.646 kb on + strand, within Pf1N1B4_813at 931.646 kb on + strand, within Pf1N1B4_813at 931.647 kb on - strand, within Pf1N1B4_813at 931.778 kb on + strandat 931.779 kb on - strandat 931.781 kb on + strandat 931.797 kb on + strandat 931.797 kb on + strandat 932.108 kb on + strandat 932.146 kb on + strandat 932.148 kb on + strandat 932.148 kb on + strandat 932.148 kb on + strandat 932.251 kb on + strandat 932.267 kb on + strandat 932.460 kb on - strand, within Pf1N1B4_814at 932.502 kb on - strand, within Pf1N1B4_814at 932.525 kb on + strand, within Pf1N1B4_814at 932.626 kb on - strand, within Pf1N1B4_814

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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930,350 + -1.3
930,350 + Pf1N1B4_812 0.78 -1.3
930,350 + Pf1N1B4_812 0.78 -0.5
930,351 - Pf1N1B4_812 0.78 +1.2
930,351 - Pf1N1B4_812 0.78 -0.9
930,351 - Pf1N1B4_812 0.78 -0.9
930,351 - Pf1N1B4_812 0.78 +1.6
930,541 + Pf1N1B4_812 0.87 -0.9
930,541 + Pf1N1B4_812 0.87 -1.3
930,541 + Pf1N1B4_812 0.87 +0.5
930,541 + Pf1N1B4_812 0.87 -1.7
930,541 + Pf1N1B4_812 0.87 +0.6
930,542 - Pf1N1B4_812 0.87 +0.2
930,542 - Pf1N1B4_812 0.87 -1.2
930,542 - Pf1N1B4_812 0.87 +0.3
930,542 - Pf1N1B4_812 0.87 +0.9
930,542 - Pf1N1B4_812 0.87 +1.3
930,542 - Pf1N1B4_812 0.87 +1.1
930,542 - Pf1N1B4_812 0.87 -1.3
930,542 - Pf1N1B4_812 0.87 -1.3
930,542 - Pf1N1B4_812 0.87 +1.6
930,552 - Pf1N1B4_812 0.88 -1.7
930,574 + Pf1N1B4_812 0.89 +0.5
930,732 - -0.3
930,732 - -0.7
930,732 - +0.6
930,735 - +1.5
930,735 - -0.9
930,872 + +0.1
930,872 + +0.6
930,964 + -1.3
930,965 - -0.7
930,965 - -1.3
931,249 + +0.1
931,249 + +0.1
931,250 - +0.2
931,257 + +2.4
931,271 + -0.9
931,272 - +2.5
931,337 + Pf1N1B4_813 0.11 +0.1
931,337 + Pf1N1B4_813 0.11 -1.4
931,391 + Pf1N1B4_813 0.22 -1.8
931,434 + Pf1N1B4_813 0.31 -1.3
931,434 + Pf1N1B4_813 0.31 -0.2
931,434 + Pf1N1B4_813 0.31 +0.5
931,435 - Pf1N1B4_813 0.31 -0.5
931,444 + Pf1N1B4_813 0.33 -0.5
931,444 + Pf1N1B4_813 0.33 -2.3
931,479 + Pf1N1B4_813 0.40 -2.0
931,479 + Pf1N1B4_813 0.40 +0.6
931,479 + -1.3
931,479 + Pf1N1B4_813 0.40 -0.8
931,480 - Pf1N1B4_813 0.40 +1.2
931,480 - Pf1N1B4_813 0.40 -0.7
931,480 - Pf1N1B4_813 0.40 +0.1
931,480 - Pf1N1B4_813 0.40 -0.9
931,494 - Pf1N1B4_813 0.43 +0.3
931,494 - Pf1N1B4_813 0.43 -0.3
931,546 + Pf1N1B4_813 0.53 -1.5
931,546 + Pf1N1B4_813 0.53 +0.1
931,546 + Pf1N1B4_813 0.53 -0.9
931,546 + Pf1N1B4_813 0.53 -2.3
931,546 + Pf1N1B4_813 0.53 -0.9
931,546 + Pf1N1B4_813 0.53 -0.3
931,547 - Pf1N1B4_813 0.54 -0.5
931,547 - Pf1N1B4_813 0.54 +0.1
931,547 - Pf1N1B4_813 0.54 +1.1
931,547 - Pf1N1B4_813 0.54 -2.1
931,547 - Pf1N1B4_813 0.54 -0.7
931,547 - Pf1N1B4_813 0.54 -0.9
931,547 - Pf1N1B4_813 0.54 -0.5
931,556 + Pf1N1B4_813 0.55 -0.5
931,557 - Pf1N1B4_813 0.56 +0.1
931,646 + Pf1N1B4_813 0.74 -0.9
931,646 + Pf1N1B4_813 0.74 +1.1
931,646 + Pf1N1B4_813 0.74 -0.9
931,646 + Pf1N1B4_813 0.74 -3.2
931,647 - Pf1N1B4_813 0.74 -0.9
931,778 + -2.1
931,779 - -0.9
931,781 + -1.3
931,797 + +0.7
931,797 + -2.5
932,108 + -1.9
932,146 + -1.9
932,148 + -1.6
932,148 + -0.3
932,148 + +0.1
932,251 + -0.9
932,267 + -3.2
932,460 - Pf1N1B4_814 0.29 +0.7
932,502 - Pf1N1B4_814 0.36 +0.1
932,525 + Pf1N1B4_814 0.40 +0.1
932,626 - Pf1N1B4_814 0.58 +1.1

Or see this region's nucleotide sequence