Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5387

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5385 and Pf1N1B4_5386 are separated by 199 nucleotidesPf1N1B4_5386 and Pf1N1B4_5387 are separated by 576 nucleotides Pf1N1B4_5385 - hypothetical protein, at 117,230 to 117,610 _5385 Pf1N1B4_5386 - hypothetical protein, at 117,810 to 117,968 _5386 Pf1N1B4_5387 - hypothetical protein, at 118,545 to 118,700 _5387 Position (kb) 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 117.570 kb on + strand, within Pf1N1B4_5385at 117.570 kb on + strand, within Pf1N1B4_5385at 117.570 kb on + strand, within Pf1N1B4_5385at 117.623 kb on + strandat 117.624 kb on - strandat 117.768 kb on + strandat 117.780 kb on + strandat 117.780 kb on + strandat 117.842 kb on - strand, within Pf1N1B4_5386at 117.843 kb on + strand, within Pf1N1B4_5386at 117.843 kb on + strand, within Pf1N1B4_5386at 117.843 kb on + strand, within Pf1N1B4_5386at 117.843 kb on + strand, within Pf1N1B4_5386at 117.844 kb on - strand, within Pf1N1B4_5386at 117.844 kb on - strandat 117.844 kb on - strand, within Pf1N1B4_5386at 117.982 kb on + strandat 118.004 kb on + strandat 118.025 kb on + strandat 118.055 kb on + strandat 118.085 kb on + strandat 118.100 kb on + strandat 118.100 kb on + strandat 118.144 kb on + strandat 118.145 kb on - strandat 118.145 kb on - strandat 118.145 kb on - strandat 118.145 kb on - strandat 118.145 kb on - strandat 118.190 kb on + strandat 118.190 kb on + strandat 118.191 kb on - strandat 118.191 kb on - strandat 118.194 kb on + strandat 118.194 kb on + strandat 118.194 kb on + strandat 118.217 kb on + strandat 118.217 kb on + strandat 118.218 kb on - strandat 118.218 kb on - strandat 118.218 kb on - strandat 118.218 kb on - strandat 118.218 kb on - strandat 118.247 kb on + strandat 118.247 kb on + strandat 118.247 kb on + strandat 118.247 kb on + strandat 118.251 kb on + strandat 118.251 kb on + strandat 118.252 kb on - strandat 118.306 kb on + strandat 118.306 kb on + strandat 118.306 kb on + strandat 118.306 kb on + strandat 118.306 kb on + strandat 118.306 kb on + strandat 118.307 kb on - strandat 118.307 kb on - strandat 118.415 kb on - strandat 118.504 kb on + strandat 118.608 kb on + strand, within Pf1N1B4_5387at 118.612 kb on + strand, within Pf1N1B4_5387at 118.612 kb on + strand, within Pf1N1B4_5387at 118.612 kb on + strand, within Pf1N1B4_5387at 118.612 kb on + strand, within Pf1N1B4_5387at 118.612 kb on + strand, within Pf1N1B4_5387at 118.612 kb on + strand, within Pf1N1B4_5387at 118.613 kb on - strand, within Pf1N1B4_5387at 118.613 kb on - strand, within Pf1N1B4_5387at 118.807 kb on + strandat 118.807 kb on + strandat 118.991 kb on - strandat 118.991 kb on - strandat 119.003 kb on - strandat 119.003 kb on - strandat 119.003 kb on - strandat 119.043 kb on - strandat 119.043 kb on - strandat 119.043 kb on - strandat 119.299 kb on - strandat 119.322 kb on + strandat 119.441 kb on + strandat 119.441 kb on + strandat 119.441 kb on + strandat 119.441 kb on + strandat 119.446 kb on - strandat 119.446 kb on - strandat 119.474 kb on - strandat 119.474 kb on - strandat 119.474 kb on - strandat 119.527 kb on + strandat 119.528 kb on - strandat 119.549 kb on + strandat 119.549 kb on + strandat 119.549 kb on + strandat 119.549 kb on + strandat 119.549 kb on + strandat 119.549 kb on + strandat 119.550 kb on - strandat 119.550 kb on - strandat 119.550 kb on - strandat 119.550 kb on - strandat 119.550 kb on - strandat 119.550 kb on - strandat 119.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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117,570 + Pf1N1B4_5385 0.89 -1.0
117,570 + Pf1N1B4_5385 0.89 -1.4
117,570 + Pf1N1B4_5385 0.89 +0.3
117,623 + -0.8
117,624 - -0.6
117,768 + +0.9
117,780 + +0.2
117,780 + -1.8
117,842 - Pf1N1B4_5386 0.20 +1.5
117,843 + Pf1N1B4_5386 0.21 -0.8
117,843 + Pf1N1B4_5386 0.21 +0.2
117,843 + Pf1N1B4_5386 0.21 +0.0
117,843 + Pf1N1B4_5386 0.21 -2.0
117,844 - Pf1N1B4_5386 0.21 +1.8
117,844 - +0.9
117,844 - Pf1N1B4_5386 0.21 +1.2
117,982 + +0.1
118,004 + -0.4
118,025 + -0.0
118,055 + +0.5
118,085 + -0.1
118,100 + +0.8
118,100 + -1.5
118,144 + -1.4
118,145 - +0.9
118,145 - +0.0
118,145 - +2.5
118,145 - +1.2
118,145 - +1.0
118,190 + -1.0
118,190 + +0.6
118,191 - +1.8
118,191 - -0.2
118,194 + -0.7
118,194 + -1.3
118,194 + -1.8
118,217 + -1.2
118,217 + +0.2
118,218 - -2.0
118,218 - -0.4
118,218 - -0.4
118,218 - +0.2
118,218 - +0.2
118,247 + +0.2
118,247 + +1.2
118,247 + -0.4
118,247 + -0.4
118,251 + +0.9
118,251 + +0.1
118,252 - +0.8
118,306 + -0.4
118,306 + -0.4
118,306 + +0.2
118,306 + -1.3
118,306 + -0.0
118,306 + +0.4
118,307 - +0.7
118,307 - -1.4
118,415 - +1.9
118,504 + +0.7
118,608 + Pf1N1B4_5387 0.40 -1.1
118,612 + Pf1N1B4_5387 0.43 -0.3
118,612 + Pf1N1B4_5387 0.43 -1.0
118,612 + Pf1N1B4_5387 0.43 +1.2
118,612 + Pf1N1B4_5387 0.43 -0.7
118,612 + Pf1N1B4_5387 0.43 +0.2
118,612 + Pf1N1B4_5387 0.43 -1.3
118,613 - Pf1N1B4_5387 0.44 -1.1
118,613 - Pf1N1B4_5387 0.44 -0.1
118,807 + +1.6
118,807 + -0.6
118,991 - -0.2
118,991 - +2.2
119,003 - -0.3
119,003 - -1.0
119,003 - -2.3
119,043 - -0.2
119,043 - -1.4
119,043 - +0.8
119,299 - +0.9
119,322 + -1.1
119,441 + -0.0
119,441 + -0.0
119,441 + -1.2
119,441 + -0.4
119,446 - +1.0
119,446 - +1.2
119,474 - -0.2
119,474 - -0.4
119,474 - -1.1
119,527 + +0.2
119,528 - +0.8
119,549 + +2.5
119,549 + +0.2
119,549 + +2.2
119,549 + +1.5
119,549 + +0.5
119,549 + +0.6
119,550 - +1.2
119,550 - +1.2
119,550 - -0.6
119,550 - +2.2
119,550 - -0.4
119,550 - -0.2
119,550 - -0.2

Or see this region's nucleotide sequence