Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5385 and Pf1N1B4_5386 are separated by 199 nucleotides Pf1N1B4_5386 and Pf1N1B4_5387 are separated by 576 nucleotides
Pf1N1B4_5385 - hypothetical protein, at 117,230 to 117,610
_5385
Pf1N1B4_5386 - hypothetical protein, at 117,810 to 117,968
_5386
Pf1N1B4_5387 - hypothetical protein, at 118,545 to 118,700
_5387
Position (kb)
118
119 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 117.570 kb on + strand, within Pf1N1B4_5385 at 117.570 kb on + strand, within Pf1N1B4_5385 at 117.570 kb on + strand, within Pf1N1B4_5385 at 117.623 kb on + strand at 117.624 kb on - strand at 117.768 kb on + strand at 117.780 kb on + strand at 117.780 kb on + strand at 117.842 kb on - strand, within Pf1N1B4_5386 at 117.843 kb on + strand, within Pf1N1B4_5386 at 117.843 kb on + strand, within Pf1N1B4_5386 at 117.843 kb on + strand, within Pf1N1B4_5386 at 117.843 kb on + strand, within Pf1N1B4_5386 at 117.844 kb on - strand, within Pf1N1B4_5386 at 117.844 kb on - strand at 117.844 kb on - strand, within Pf1N1B4_5386 at 117.982 kb on + strand at 118.004 kb on + strand at 118.025 kb on + strand at 118.055 kb on + strand at 118.085 kb on + strand at 118.100 kb on + strand at 118.100 kb on + strand at 118.144 kb on + strand at 118.145 kb on - strand at 118.145 kb on - strand at 118.145 kb on - strand at 118.145 kb on - strand at 118.145 kb on - strand at 118.190 kb on + strand at 118.190 kb on + strand at 118.191 kb on - strand at 118.191 kb on - strand at 118.194 kb on + strand at 118.194 kb on + strand at 118.194 kb on + strand at 118.217 kb on + strand at 118.217 kb on + strand at 118.218 kb on - strand at 118.218 kb on - strand at 118.218 kb on - strand at 118.218 kb on - strand at 118.218 kb on - strand at 118.247 kb on + strand at 118.247 kb on + strand at 118.247 kb on + strand at 118.247 kb on + strand at 118.251 kb on + strand at 118.251 kb on + strand at 118.252 kb on - strand at 118.306 kb on + strand at 118.306 kb on + strand at 118.306 kb on + strand at 118.306 kb on + strand at 118.306 kb on + strand at 118.306 kb on + strand at 118.307 kb on - strand at 118.307 kb on - strand at 118.415 kb on - strand at 118.504 kb on + strand at 118.608 kb on + strand, within Pf1N1B4_5387 at 118.612 kb on + strand, within Pf1N1B4_5387 at 118.612 kb on + strand, within Pf1N1B4_5387 at 118.612 kb on + strand, within Pf1N1B4_5387 at 118.612 kb on + strand, within Pf1N1B4_5387 at 118.612 kb on + strand, within Pf1N1B4_5387 at 118.612 kb on + strand, within Pf1N1B4_5387 at 118.613 kb on - strand, within Pf1N1B4_5387 at 118.613 kb on - strand, within Pf1N1B4_5387 at 118.807 kb on + strand at 118.807 kb on + strand at 118.991 kb on - strand at 118.991 kb on - strand at 119.003 kb on - strand at 119.003 kb on - strand at 119.003 kb on - strand at 119.043 kb on - strand at 119.043 kb on - strand at 119.043 kb on - strand at 119.299 kb on - strand at 119.322 kb on + strand at 119.441 kb on + strand at 119.441 kb on + strand at 119.441 kb on + strand at 119.441 kb on + strand at 119.446 kb on - strand at 119.446 kb on - strand at 119.474 kb on - strand at 119.474 kb on - strand at 119.474 kb on - strand at 119.527 kb on + strand at 119.528 kb on - strand at 119.549 kb on + strand at 119.549 kb on + strand at 119.549 kb on + strand at 119.549 kb on + strand at 119.549 kb on + strand at 119.549 kb on + strand at 119.550 kb on - strand at 119.550 kb on - strand at 119.550 kb on - strand at 119.550 kb on - strand at 119.550 kb on - strand at 119.550 kb on - strand at 119.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 117,570 + Pf1N1B4_5385 0.89 -1.0 117,570 + Pf1N1B4_5385 0.89 -1.4 117,570 + Pf1N1B4_5385 0.89 +0.3 117,623 + -0.8 117,624 - -0.6 117,768 + +0.9 117,780 + +0.2 117,780 + -1.8 117,842 - Pf1N1B4_5386 0.20 +1.5 117,843 + Pf1N1B4_5386 0.21 -0.8 117,843 + Pf1N1B4_5386 0.21 +0.2 117,843 + Pf1N1B4_5386 0.21 +0.0 117,843 + Pf1N1B4_5386 0.21 -2.0 117,844 - Pf1N1B4_5386 0.21 +1.8 117,844 - +0.9 117,844 - Pf1N1B4_5386 0.21 +1.2 117,982 + +0.1 118,004 + -0.4 118,025 + -0.0 118,055 + +0.5 118,085 + -0.1 118,100 + +0.8 118,100 + -1.5 118,144 + -1.4 118,145 - +0.9 118,145 - +0.0 118,145 - +2.5 118,145 - +1.2 118,145 - +1.0 118,190 + -1.0 118,190 + +0.6 118,191 - +1.8 118,191 - -0.2 118,194 + -0.7 118,194 + -1.3 118,194 + -1.8 118,217 + -1.2 118,217 + +0.2 118,218 - -2.0 118,218 - -0.4 118,218 - -0.4 118,218 - +0.2 118,218 - +0.2 118,247 + +0.2 118,247 + +1.2 118,247 + -0.4 118,247 + -0.4 118,251 + +0.9 118,251 + +0.1 118,252 - +0.8 118,306 + -0.4 118,306 + -0.4 118,306 + +0.2 118,306 + -1.3 118,306 + -0.0 118,306 + +0.4 118,307 - +0.7 118,307 - -1.4 118,415 - +1.9 118,504 + +0.7 118,608 + Pf1N1B4_5387 0.40 -1.1 118,612 + Pf1N1B4_5387 0.43 -0.3 118,612 + Pf1N1B4_5387 0.43 -1.0 118,612 + Pf1N1B4_5387 0.43 +1.2 118,612 + Pf1N1B4_5387 0.43 -0.7 118,612 + Pf1N1B4_5387 0.43 +0.2 118,612 + Pf1N1B4_5387 0.43 -1.3 118,613 - Pf1N1B4_5387 0.44 -1.1 118,613 - Pf1N1B4_5387 0.44 -0.1 118,807 + +1.6 118,807 + -0.6 118,991 - -0.2 118,991 - +2.2 119,003 - -0.3 119,003 - -1.0 119,003 - -2.3 119,043 - -0.2 119,043 - -1.4 119,043 - +0.8 119,299 - +0.9 119,322 + -1.1 119,441 + -0.0 119,441 + -0.0 119,441 + -1.2 119,441 + -0.4 119,446 - +1.0 119,446 - +1.2 119,474 - -0.2 119,474 - -0.4 119,474 - -1.1 119,527 + +0.2 119,528 - +0.8 119,549 + +2.5 119,549 + +0.2 119,549 + +2.2 119,549 + +1.5 119,549 + +0.5 119,549 + +0.6 119,550 - +1.2 119,550 - +1.2 119,550 - -0.6 119,550 - +2.2 119,550 - -0.4 119,550 - -0.2 119,550 - -0.2
Or see this region's nucleotide sequence