Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_535

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_535 and Pf1N1B4_536 are separated by 360 nucleotidesPf1N1B4_536 and Pf1N1B4_537 are separated by 209 nucleotides Pf1N1B4_535 - FIG00953341: hypothetical protein, at 633,973 to 634,809 _535 Pf1N1B4_536 - FIG00953551: hypothetical protein, at 635,170 to 635,349 _536 Pf1N1B4_537 - FIG00959721: hypothetical protein, at 635,559 to 636,275 _537 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2at 632.983 kb on + strandat 632.983 kb on + strandat 632.984 kb on - strandat 633.015 kb on + strandat 633.115 kb on + strandat 633.115 kb on + strandat 633.116 kb on - strandat 633.322 kb on - strandat 633.322 kb on - strandat 633.378 kb on - strandat 633.378 kb on - strandat 633.380 kb on - strandat 633.380 kb on - strandat 633.531 kb on + strandat 633.531 kb on + strandat 633.532 kb on - strandat 633.532 kb on - strandat 633.548 kb on + strandat 633.707 kb on - strandat 633.735 kb on + strandat 633.787 kb on - strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.841 kb on - strandat 633.841 kb on - strandat 633.841 kb on - strandat 633.859 kb on + strandat 633.859 kb on + strandat 633.859 kb on + strandat 633.859 kb on + strandat 633.860 kb on - strandat 633.922 kb on + strandat 633.955 kb on + strandat 633.955 kb on + strandat 633.956 kb on - strandat 633.956 kb on - strandat 633.988 kb on - strandat 634.023 kb on - strandat 634.023 kb on - strandat 634.023 kb on - strandat 634.023 kb on - strandat 634.071 kb on + strandat 634.072 kb on - strand, within Pf1N1B4_535at 634.072 kb on - strand, within Pf1N1B4_535at 634.072 kb on - strand, within Pf1N1B4_535at 634.162 kb on - strand, within Pf1N1B4_535at 634.231 kb on - strand, within Pf1N1B4_535at 634.231 kb on - strand, within Pf1N1B4_535at 634.248 kb on + strand, within Pf1N1B4_535at 634.376 kb on + strand, within Pf1N1B4_535at 634.376 kb on + strand, within Pf1N1B4_535at 634.377 kb on - strandat 634.377 kb on - strand, within Pf1N1B4_535at 634.377 kb on - strand, within Pf1N1B4_535at 634.377 kb on - strand, within Pf1N1B4_535at 634.451 kb on + strand, within Pf1N1B4_535at 634.451 kb on + strand, within Pf1N1B4_535at 634.451 kb on + strand, within Pf1N1B4_535at 634.452 kb on - strand, within Pf1N1B4_535at 634.470 kb on - strandat 634.704 kb on - strand, within Pf1N1B4_535at 634.749 kb on - strandat 634.751 kb on - strandat 634.841 kb on + strandat 635.052 kb on - strandat 635.101 kb on - strandat 635.128 kb on - strandat 635.153 kb on - strandat 635.177 kb on + strandat 635.347 kb on + strandat 635.361 kb on + strandat 635.500 kb on + strandat 635.500 kb on + strandat 635.518 kb on - strandat 635.760 kb on + strandat 635.760 kb on + strand, within Pf1N1B4_537at 635.760 kb on + strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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632,983 + -0.8
632,983 + -0.7
632,984 - -0.6
633,015 + -1.8
633,115 + +0.6
633,115 + -0.2
633,116 - +1.0
633,322 - +1.0
633,322 - -1.6
633,378 - -0.2
633,378 - +0.0
633,380 - +1.0
633,380 - -1.2
633,531 + -1.5
633,531 + -0.0
633,532 - -0.4
633,532 - -1.0
633,548 + +0.5
633,707 - -1.0
633,735 + -1.8
633,787 - -0.6
633,840 + -1.6
633,840 + -0.7
633,840 + -2.2
633,840 + +1.0
633,841 - +1.0
633,841 - +0.7
633,841 - -2.6
633,859 + -0.3
633,859 + +0.3
633,859 + +2.4
633,859 + -1.5
633,860 - +0.3
633,922 + +1.0
633,955 + +1.0
633,955 + -0.3
633,956 - -1.3
633,956 - -0.6
633,988 - -0.0
634,023 - +0.4
634,023 - -1.8
634,023 - -1.8
634,023 - -1.0
634,071 + -0.6
634,072 - Pf1N1B4_535 0.12 -1.5
634,072 - Pf1N1B4_535 0.12 -0.2
634,072 - Pf1N1B4_535 0.12 +0.6
634,162 - Pf1N1B4_535 0.23 -1.3
634,231 - Pf1N1B4_535 0.31 +0.3
634,231 - Pf1N1B4_535 0.31 -1.6
634,248 + Pf1N1B4_535 0.33 -1.3
634,376 + Pf1N1B4_535 0.48 -1.0
634,376 + Pf1N1B4_535 0.48 -1.3
634,377 - -0.6
634,377 - Pf1N1B4_535 0.48 -2.0
634,377 - Pf1N1B4_535 0.48 -0.7
634,377 - Pf1N1B4_535 0.48 -1.3
634,451 + Pf1N1B4_535 0.57 +1.0
634,451 + Pf1N1B4_535 0.57 +0.3
634,451 + Pf1N1B4_535 0.57 +0.5
634,452 - Pf1N1B4_535 0.57 -1.0
634,470 - -0.0
634,704 - Pf1N1B4_535 0.87 -1.8
634,749 - +0.3
634,751 - -0.4
634,841 + -0.3
635,052 - +0.4
635,101 - +0.5
635,128 - -1.8
635,153 - -1.6
635,177 + +1.4
635,347 + +1.0
635,361 + -0.0
635,500 + +1.7
635,500 + +1.0
635,518 - +0.1
635,760 + +1.0
635,760 + Pf1N1B4_537 0.28 +0.4
635,760 + Pf1N1B4_537 0.28 +1.3
635,761 - Pf1N1B4_537 0.28 +0.9
635,761 - Pf1N1B4_537 0.28 +2.0
635,761 - Pf1N1B4_537 0.28 -1.0
635,761 - Pf1N1B4_537 0.28 -0.8
635,761 - Pf1N1B4_537 0.28 -2.0
635,761 - Pf1N1B4_537 0.28 +2.0
635,761 - Pf1N1B4_537 0.28 -1.0
635,761 - Pf1N1B4_537 0.28 +0.7
635,761 - Pf1N1B4_537 0.28 +0.7
635,761 - Pf1N1B4_537 0.28 -0.9
635,761 - Pf1N1B4_537 0.28 -0.0
635,761 - Pf1N1B4_537 0.28 -0.0
635,761 - Pf1N1B4_537 0.28 -0.6

Or see this region's nucleotide sequence