Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4656 and Pf1N1B4_4657 overlap by 4 nucleotides Pf1N1B4_4657 and Pf1N1B4_4658 are separated by 227 nucleotides
Pf1N1B4_4656 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 5,133,850 to 5,135,523
_4656
Pf1N1B4_4657 - Oxidoreductase probably involved in sulfite reduction, at 5,135,520 to 5,136,014
_4657
Pf1N1B4_4658 - hypothetical protein, at 5,136,242 to 5,137,210
_4658
Position (kb) 5135
5136
5137 Strain fitness (log2 ratio) -1
0
1
2
3 at 5134.558 kb on + strand, within Pf1N1B4_4656 at 5134.559 kb on - strand, within Pf1N1B4_4656 at 5134.588 kb on + strand, within Pf1N1B4_4656 at 5135.183 kb on - strand, within Pf1N1B4_4656 at 5135.215 kb on - strand, within Pf1N1B4_4656 at 5135.451 kb on + strand at 5135.452 kb on - strand at 5135.787 kb on + strand, within Pf1N1B4_4657 at 5135.799 kb on + strand, within Pf1N1B4_4657 at 5135.854 kb on + strand, within Pf1N1B4_4657 at 5135.854 kb on + strand, within Pf1N1B4_4657 at 5135.854 kb on + strand, within Pf1N1B4_4657 at 5135.854 kb on + strand, within Pf1N1B4_4657 at 5135.855 kb on - strand, within Pf1N1B4_4657 at 5135.919 kb on - strand, within Pf1N1B4_4657 at 5135.919 kb on - strand, within Pf1N1B4_4657 at 5136.213 kb on - strand at 5136.315 kb on - strand at 5136.366 kb on - strand, within Pf1N1B4_4658 at 5136.631 kb on + strand, within Pf1N1B4_4658 at 5136.707 kb on + strand, within Pf1N1B4_4658 at 5136.734 kb on + strand, within Pf1N1B4_4658 at 5136.734 kb on + strand, within Pf1N1B4_4658 at 5136.735 kb on - strand, within Pf1N1B4_4658 at 5136.737 kb on + strand, within Pf1N1B4_4658 at 5136.737 kb on + strand, within Pf1N1B4_4658 at 5136.737 kb on + strand, within Pf1N1B4_4658 at 5136.759 kb on + strand, within Pf1N1B4_4658 at 5136.827 kb on + strand, within Pf1N1B4_4658 at 5136.842 kb on + strand, within Pf1N1B4_4658 at 5136.843 kb on - strand at 5136.881 kb on + strand, within Pf1N1B4_4658 at 5136.882 kb on - strand, within Pf1N1B4_4658
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,134,558 + Pf1N1B4_4656 0.42 -0.6 5,134,559 - Pf1N1B4_4656 0.42 +0.6 5,134,588 + Pf1N1B4_4656 0.44 +0.1 5,135,183 - Pf1N1B4_4656 0.80 +0.0 5,135,215 - Pf1N1B4_4656 0.82 +0.7 5,135,451 + +0.0 5,135,452 - -0.6 5,135,787 + Pf1N1B4_4657 0.54 -1.0 5,135,799 + Pf1N1B4_4657 0.56 -1.6 5,135,854 + Pf1N1B4_4657 0.67 -1.6 5,135,854 + Pf1N1B4_4657 0.67 -0.0 5,135,854 + Pf1N1B4_4657 0.67 +0.1 5,135,854 + Pf1N1B4_4657 0.67 -1.6 5,135,855 - Pf1N1B4_4657 0.68 -0.3 5,135,919 - Pf1N1B4_4657 0.81 -1.6 5,135,919 - Pf1N1B4_4657 0.81 -0.2 5,136,213 - +0.4 5,136,315 - -0.6 5,136,366 - Pf1N1B4_4658 0.13 +0.2 5,136,631 + Pf1N1B4_4658 0.40 -0.7 5,136,707 + Pf1N1B4_4658 0.48 -1.0 5,136,734 + Pf1N1B4_4658 0.51 -0.6 5,136,734 + Pf1N1B4_4658 0.51 -0.4 5,136,735 - Pf1N1B4_4658 0.51 +0.8 5,136,737 + Pf1N1B4_4658 0.51 +3.5 5,136,737 + Pf1N1B4_4658 0.51 -0.3 5,136,737 + Pf1N1B4_4658 0.51 +2.4 5,136,759 + Pf1N1B4_4658 0.53 +0.4 5,136,827 + Pf1N1B4_4658 0.60 -0.6 5,136,842 + Pf1N1B4_4658 0.62 -1.6 5,136,843 - -1.4 5,136,881 + Pf1N1B4_4658 0.66 +0.2 5,136,882 - Pf1N1B4_4658 0.66 +0.4
Or see this region's nucleotide sequence