Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3753

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3752 and Pf1N1B4_3753 are separated by 209 nucleotidesPf1N1B4_3753 and Pf1N1B4_3754 are separated by 181 nucleotidesPf1N1B4_3754 and Pf1N1B4_3755 overlap by 1 nucleotides Pf1N1B4_3752 - Aspartyl aminopeptidase, at 4,164,174 to 4,165,463 _3752 Pf1N1B4_3753 - Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70), at 4,165,673 to 4,166,308 _3753 Pf1N1B4_3754 - Cell division topological specificity factor MinE, at 4,166,490 to 4,166,744 _3754 Pf1N1B4_3755 - Septum site-determining protein MinD, at 4,166,744 to 4,167,556 _3755 Position (kb) 4165 4166 4167Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4164.740 kb on - strand, within Pf1N1B4_3752at 4164.755 kb on + strand, within Pf1N1B4_3752at 4164.756 kb on - strand, within Pf1N1B4_3752at 4164.820 kb on + strand, within Pf1N1B4_3752at 4164.820 kb on + strand, within Pf1N1B4_3752at 4164.820 kb on + strand, within Pf1N1B4_3752at 4164.820 kb on + strand, within Pf1N1B4_3752at 4164.820 kb on + strand, within Pf1N1B4_3752at 4164.821 kb on - strand, within Pf1N1B4_3752at 4164.821 kb on - strand, within Pf1N1B4_3752at 4164.821 kb on - strandat 4164.821 kb on - strand, within Pf1N1B4_3752at 4164.821 kb on - strand, within Pf1N1B4_3752at 4164.821 kb on - strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.846 kb on + strand, within Pf1N1B4_3752at 4164.847 kb on - strand, within Pf1N1B4_3752at 4164.847 kb on - strand, within Pf1N1B4_3752at 4164.847 kb on - strand, within Pf1N1B4_3752at 4164.847 kb on - strand, within Pf1N1B4_3752at 4164.847 kb on - strand, within Pf1N1B4_3752at 4164.978 kb on - strand, within Pf1N1B4_3752at 4165.025 kb on + strand, within Pf1N1B4_3752at 4165.025 kb on + strand, within Pf1N1B4_3752at 4165.025 kb on + strand, within Pf1N1B4_3752at 4165.138 kb on + strand, within Pf1N1B4_3752at 4165.138 kb on + strand, within Pf1N1B4_3752at 4165.138 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.306 kb on + strand, within Pf1N1B4_3752at 4165.307 kb on - strand, within Pf1N1B4_3752at 4165.307 kb on - strand, within Pf1N1B4_3752at 4165.307 kb on - strand, within Pf1N1B4_3752at 4165.307 kb on - strand, within Pf1N1B4_3752at 4165.307 kb on - strand, within Pf1N1B4_3752at 4165.307 kb on - strand, within Pf1N1B4_3752at 4165.307 kb on - strand, within Pf1N1B4_3752at 4165.309 kb on + strand, within Pf1N1B4_3752at 4165.309 kb on + strand, within Pf1N1B4_3752at 4165.358 kb on + strandat 4165.358 kb on + strandat 4165.359 kb on - strandat 4165.359 kb on - strandat 4165.463 kb on + strandat 4165.463 kb on + strandat 4165.494 kb on + strandat 4165.499 kb on + strandat 4165.499 kb on + strandat 4165.499 kb on + strandat 4165.499 kb on + strandat 4165.499 kb on + strandat 4165.499 kb on + strandat 4165.499 kb on + strandat 4165.500 kb on - strandat 4165.500 kb on - strandat 4165.545 kb on + strandat 4165.545 kb on + strandat 4165.546 kb on - strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.609 kb on + strandat 4165.610 kb on - strandat 4165.610 kb on - strandat 4165.610 kb on - strandat 4165.610 kb on - strandat 4165.610 kb on - strandat 4165.610 kb on - strandat 4165.791 kb on + strand, within Pf1N1B4_3753at 4165.791 kb on + strand, within Pf1N1B4_3753at 4165.791 kb on + strand, within Pf1N1B4_3753at 4165.806 kb on - strand, within Pf1N1B4_3753at 4165.821 kb on - strand, within Pf1N1B4_3753at 4165.821 kb on - strand, within Pf1N1B4_3753at 4165.831 kb on + strand, within Pf1N1B4_3753at 4165.831 kb on + strand, within Pf1N1B4_3753at 4165.831 kb on + strand, within Pf1N1B4_3753at 4165.831 kb on + strand, within Pf1N1B4_3753at 4165.831 kb on + strand, within Pf1N1B4_3753at 4165.832 kb on - strand, within Pf1N1B4_3753at 4165.832 kb on - strand, within Pf1N1B4_3753at 4165.832 kb on - strand, within Pf1N1B4_3753at 4165.832 kb on - strand, within Pf1N1B4_3753at 4166.043 kb on + strand, within Pf1N1B4_3753at 4166.309 kb on + strandat 4166.323 kb on - strandat 4166.443 kb on - strandat 4166.443 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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4,164,740 - Pf1N1B4_3752 0.44 +0.1
4,164,755 + Pf1N1B4_3752 0.45 +0.5
4,164,756 - Pf1N1B4_3752 0.45 +0.4
4,164,820 + Pf1N1B4_3752 0.50 -0.2
4,164,820 + Pf1N1B4_3752 0.50 +0.5
4,164,820 + Pf1N1B4_3752 0.50 +0.4
4,164,820 + Pf1N1B4_3752 0.50 +0.6
4,164,820 + Pf1N1B4_3752 0.50 +0.8
4,164,821 - Pf1N1B4_3752 0.50 +1.4
4,164,821 - Pf1N1B4_3752 0.50 +0.0
4,164,821 - +0.2
4,164,821 - Pf1N1B4_3752 0.50 +0.4
4,164,821 - Pf1N1B4_3752 0.50 +1.1
4,164,821 - Pf1N1B4_3752 0.50 -0.7
4,164,846 + Pf1N1B4_3752 0.52 -0.1
4,164,846 + Pf1N1B4_3752 0.52 +0.4
4,164,846 + Pf1N1B4_3752 0.52 -0.6
4,164,846 + Pf1N1B4_3752 0.52 -0.2
4,164,846 + Pf1N1B4_3752 0.52 +0.4
4,164,846 + Pf1N1B4_3752 0.52 -0.1
4,164,846 + Pf1N1B4_3752 0.52 +1.3
4,164,846 + Pf1N1B4_3752 0.52 -1.2
4,164,846 + Pf1N1B4_3752 0.52 -0.1
4,164,846 + Pf1N1B4_3752 0.52 -1.1
4,164,847 - Pf1N1B4_3752 0.52 +1.3
4,164,847 - Pf1N1B4_3752 0.52 +1.0
4,164,847 - Pf1N1B4_3752 0.52 -0.6
4,164,847 - Pf1N1B4_3752 0.52 +0.3
4,164,847 - Pf1N1B4_3752 0.52 +0.2
4,164,978 - Pf1N1B4_3752 0.62 +0.2
4,165,025 + Pf1N1B4_3752 0.66 +0.1
4,165,025 + Pf1N1B4_3752 0.66 +0.5
4,165,025 + Pf1N1B4_3752 0.66 +0.3
4,165,138 + Pf1N1B4_3752 0.75 -0.8
4,165,138 + Pf1N1B4_3752 0.75 -1.2
4,165,138 + Pf1N1B4_3752 0.75 -1.9
4,165,306 + Pf1N1B4_3752 0.88 +0.8
4,165,306 + Pf1N1B4_3752 0.88 +0.6
4,165,306 + Pf1N1B4_3752 0.88 +0.6
4,165,306 + Pf1N1B4_3752 0.88 -0.4
4,165,306 + Pf1N1B4_3752 0.88 -1.6
4,165,306 + Pf1N1B4_3752 0.88 -1.1
4,165,306 + Pf1N1B4_3752 0.88 +1.2
4,165,306 + Pf1N1B4_3752 0.88 +0.8
4,165,306 + Pf1N1B4_3752 0.88 +0.2
4,165,306 + Pf1N1B4_3752 0.88 +1.5
4,165,306 + Pf1N1B4_3752 0.88 +0.6
4,165,306 + Pf1N1B4_3752 0.88 -1.6
4,165,306 + Pf1N1B4_3752 0.88 +0.2
4,165,306 + Pf1N1B4_3752 0.88 +1.0
4,165,306 + Pf1N1B4_3752 0.88 -0.8
4,165,306 + Pf1N1B4_3752 0.88 +0.6
4,165,306 + Pf1N1B4_3752 0.88 +1.0
4,165,306 + Pf1N1B4_3752 0.88 +1.4
4,165,306 + Pf1N1B4_3752 0.88 +2.2
4,165,306 + Pf1N1B4_3752 0.88 -0.4
4,165,306 + Pf1N1B4_3752 0.88 -0.8
4,165,306 + Pf1N1B4_3752 0.88 +0.5
4,165,307 - Pf1N1B4_3752 0.88 +0.4
4,165,307 - Pf1N1B4_3752 0.88 +1.3
4,165,307 - Pf1N1B4_3752 0.88 -2.4
4,165,307 - Pf1N1B4_3752 0.88 -1.6
4,165,307 - Pf1N1B4_3752 0.88 +1.2
4,165,307 - Pf1N1B4_3752 0.88 +1.2
4,165,307 - Pf1N1B4_3752 0.88 -2.2
4,165,309 + Pf1N1B4_3752 0.88 +0.2
4,165,309 + Pf1N1B4_3752 0.88 -2.8
4,165,358 + -0.5
4,165,358 + +1.8
4,165,359 - -0.2
4,165,359 - +2.3
4,165,463 + -0.2
4,165,463 + +1.9
4,165,494 + +0.8
4,165,499 + -1.2
4,165,499 + -0.9
4,165,499 + -1.1
4,165,499 + -0.4
4,165,499 + -1.6
4,165,499 + +1.1
4,165,499 + +0.9
4,165,500 - -1.2
4,165,500 - +1.5
4,165,545 + +1.5
4,165,545 + -0.2
4,165,546 - +0.5
4,165,609 + +0.8
4,165,609 + -1.1
4,165,609 + -2.5
4,165,609 + -1.2
4,165,609 + +2.2
4,165,609 + -0.2
4,165,609 + +1.8
4,165,609 + +1.3
4,165,609 + -1.4
4,165,609 + +0.2
4,165,609 + -1.6
4,165,609 + +1.0
4,165,609 + -0.2
4,165,609 + -1.6
4,165,609 + +1.4
4,165,609 + +1.2
4,165,609 + +1.3
4,165,609 + -0.1
4,165,609 + +0.2
4,165,609 + -0.1
4,165,609 + -1.2
4,165,609 + +1.8
4,165,609 + +1.2
4,165,609 + -0.2
4,165,609 + -0.5
4,165,609 + +0.0
4,165,610 - +0.8
4,165,610 - -1.2
4,165,610 - +1.6
4,165,610 - +0.8
4,165,610 - +1.2
4,165,610 - -0.4
4,165,791 + Pf1N1B4_3753 0.19 -0.2
4,165,791 + Pf1N1B4_3753 0.19 +0.0
4,165,791 + Pf1N1B4_3753 0.19 -0.8
4,165,806 - Pf1N1B4_3753 0.21 -0.6
4,165,821 - Pf1N1B4_3753 0.23 -1.2
4,165,821 - Pf1N1B4_3753 0.23 -1.2
4,165,831 + Pf1N1B4_3753 0.25 +0.3
4,165,831 + Pf1N1B4_3753 0.25 +0.0
4,165,831 + Pf1N1B4_3753 0.25 -1.6
4,165,831 + Pf1N1B4_3753 0.25 -0.8
4,165,831 + Pf1N1B4_3753 0.25 -0.2
4,165,832 - Pf1N1B4_3753 0.25 +0.0
4,165,832 - Pf1N1B4_3753 0.25 -1.4
4,165,832 - Pf1N1B4_3753 0.25 -1.2
4,165,832 - Pf1N1B4_3753 0.25 +0.8
4,166,043 + Pf1N1B4_3753 0.58 -1.7
4,166,309 + +0.8
4,166,323 - +0.8
4,166,443 - -1.2
4,166,443 - +1.3

Or see this region's nucleotide sequence