Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3488

Experiment: Sisomicin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sisomicin 0.001 mg/ml
3,895,001	+		Pf1N1B4_3487	0.48	+0.5
3,895,049	+		Pf1N1B4_3487	0.51	+0.3
3,895,049	+		Pf1N1B4_3487	0.51	+1.8
3,895,049	+		Pf1N1B4_3487	0.51	+0.6
3,895,049	+		Pf1N1B4_3487	0.51	+2.1
3,895,049	+		Pf1N1B4_3487	0.51	+1.4
3,895,049	+		Pf1N1B4_3487	0.51	+1.5
3,895,049	+		Pf1N1B4_3487	0.51	+1.4
3,895,049	+		Pf1N1B4_3487	0.51	-0.8
3,895,049	+		Pf1N1B4_3487	0.51	+1.7
3,895,049	+		Pf1N1B4_3487	0.51	+0.3
3,895,049	+		Pf1N1B4_3487	0.51	+0.5
3,895,049	+		Pf1N1B4_3487	0.51	+1.5
3,895,049	+		Pf1N1B4_3487	0.51	+1.3
3,895,049	+		Pf1N1B4_3487	0.51	+0.2
3,895,049	+		Pf1N1B4_3487	0.51	+1.7
3,895,049	+		Pf1N1B4_3487	0.51	+2.2
3,895,050	-				+0.9
3,895,050	-		Pf1N1B4_3487	0.51	+1.4
3,895,050	-		Pf1N1B4_3487	0.51	-1.4
3,895,050	-		Pf1N1B4_3487	0.51	+0.9
3,895,133	+				+1.3
3,895,283	-		Pf1N1B4_3487	0.69	+0.9
3,895,283	-		Pf1N1B4_3487	0.69	-1.1
3,895,292	+		Pf1N1B4_3487	0.69	+1.7
3,895,292	+		Pf1N1B4_3487	0.69	-1.1
3,895,293	-		Pf1N1B4_3487	0.70	-0.1
3,895,293	-		Pf1N1B4_3487	0.70	-0.1
3,895,333	+		Pf1N1B4_3487	0.73	-1.2
3,895,334	-		Pf1N1B4_3487	0.73	-0.6
3,895,334	-		Pf1N1B4_3487	0.73	-0.6
3,895,650	+				-0.1
3,895,651	-				+4.1
3,895,697	+				-2.6
3,895,697	+				-0.5
3,895,697	+				-1.1
3,895,697	+				-0.6
3,895,697	+				-0.1
3,895,697	+				-1.1
3,895,697	+				+0.9
3,895,697	+				-1.7
3,895,697	+				-0.1
3,895,697	+				-2.2
3,895,697	+				-1.1
3,895,698	-				+0.9
3,895,698	-				-0.3
3,895,698	-				+0.2
3,895,698	-				+1.8
3,895,698	-				-2.1
3,895,698	-				+0.9
3,895,701	+				+1.7
3,895,702	-				-0.6
3,895,702	-				-0.6
3,895,814	+				+0.2
3,895,844	+				-0.6
3,895,844	+				+0.3
3,895,844	+				-0.7
3,895,845	-				-1.4
3,895,845	-				+0.9
3,895,845	-				-1.1
3,895,845	-				-0.7
3,895,845	-				-0.1
3,895,845	-				+1.5
3,895,845	-				-1.7
3,895,845	-				+1.7
3,895,845	-				-1.1
3,895,845	-				+2.8
3,895,845	-				-1.1
3,895,845	-				-0.7
3,895,845	-				+0.3
3,895,845	-				-1.3
3,895,845	-				+1.3
3,896,025	+				-0.1
3,896,025	+		Pf1N1B4_3488	0.15	-0.1
3,896,025	+		Pf1N1B4_3488	0.15	+0.5
3,896,202	+		Pf1N1B4_3488	0.30	-1.1
3,896,202	+		Pf1N1B4_3488	0.30	+0.2
3,896,202	+		Pf1N1B4_3488	0.30	+0.2
3,896,202	+		Pf1N1B4_3488	0.30	+0.1
3,896,202	+		Pf1N1B4_3488	0.30	-1.4
3,896,202	+				-0.1
3,896,202	+		Pf1N1B4_3488	0.30	+2.5
3,896,202	+		Pf1N1B4_3488	0.30	-0.2
3,896,202	+		Pf1N1B4_3488	0.30	+0.9
3,896,203	-		Pf1N1B4_3488	0.30	-1.1
3,896,203	-		Pf1N1B4_3488	0.30	-0.7
3,896,203	-		Pf1N1B4_3488	0.30	-0.1
3,896,238	+		Pf1N1B4_3488	0.33	-1.7
3,896,238	+		Pf1N1B4_3488	0.33	+2.3
3,896,239	-		Pf1N1B4_3488	0.33	-0.1
3,896,239	-		Pf1N1B4_3488	0.33	-0.4
3,896,268	+		Pf1N1B4_3488	0.36	+0.7
3,896,269	-		Pf1N1B4_3488	0.36	-0.1
3,896,269	-		Pf1N1B4_3488	0.36	-1.4
3,896,295	+		Pf1N1B4_3488	0.38	-0.2
3,896,296	-		Pf1N1B4_3488	0.38	-0.1
3,896,548	-		Pf1N1B4_3488	0.59	-1.7
3,896,548	-		Pf1N1B4_3488	0.59	-2.2
3,896,548	-		Pf1N1B4_3488	0.59	-1.9
3,896,553	+		Pf1N1B4_3488	0.60	-0.1
3,896,553	+		Pf1N1B4_3488	0.60	-2.2
3,896,553	+				+0.9
3,896,554	-		Pf1N1B4_3488	0.60	-0.3
3,896,556	+		Pf1N1B4_3488	0.60	-0.3
3,896,556	+		Pf1N1B4_3488	0.60	-0.1
3,896,724	+		Pf1N1B4_3488	0.74	-0.7
3,896,785	+				+2.5
3,896,785	+		Pf1N1B4_3488	0.80	-0.9
3,896,785	+		Pf1N1B4_3488	0.80	-0.1
3,896,785	+		Pf1N1B4_3488	0.80	-0.1
3,896,785	+		Pf1N1B4_3488	0.80	-1.0
3,896,786	-		Pf1N1B4_3488	0.80	-0.3
3,896,786	-		Pf1N1B4_3488	0.80	+0.7
3,896,786	-				+0.9
3,897,001	+				+1.3
3,897,020	+				+1.5
3,897,020	+				+0.4
3,897,020	+				-0.1
3,897,082	+				+0.2
3,897,165	-				-0.9
3,897,165	-				+0.4
3,897,165	-				-0.1
3,897,296	+		Pf1N1B4_3489	0.27	+1.5
3,897,296	+		Pf1N1B4_3489	0.27	-0.3
3,897,297	-		Pf1N1B4_3489	0.27	-0.1
3,897,297	-		Pf1N1B4_3489	0.27	+0.9
3,897,297	-		Pf1N1B4_3489	0.27	-1.7
3,897,297	-		Pf1N1B4_3489	0.27	+1.9
3,897,297	-		Pf1N1B4_3489	0.27	-1.4
3,897,297	-		Pf1N1B4_3489	0.27	-0.5
3,897,303	-		Pf1N1B4_3489	0.28	-1.1
3,897,303	-		Pf1N1B4_3489	0.28	-1.4
3,897,332	+		Pf1N1B4_3489	0.34	+0.8
3,897,332	+		Pf1N1B4_3489	0.34	+0.1
3,897,332	+		Pf1N1B4_3489	0.34	+0.7
3,897,333	-		Pf1N1B4_3489	0.34	-1.8
3,897,333	-				+1.5
3,897,333	-		Pf1N1B4_3489	0.34	+0.9
3,897,362	+		Pf1N1B4_3489	0.40	+0.9
3,897,758	+				+1.5
3,897,758	+				-1.4
3,897,758	+				-1.4
3,897,758	+				-1.7
3,897,817	+				-0.2
3,897,817	+				-0.3
3,897,818	-				-0.7
3,897,818	-				-2.8
3,897,818	-				+0.5
3,897,818	-				-1.8
3,897,818	-				+0.3
3,897,818	-				+0.5
3,897,825	-				+0.5
3,897,826	+				-1.4
3,897,970	+		Pf1N1B4_3490	0.26	+1.3
3,897,970	+		Pf1N1B4_3490	0.26	-0.7
3,897,970	+		Pf1N1B4_3490	0.26	-0.5
3,897,970	+		Pf1N1B4_3490	0.26	-0.4
3,897,970	+		Pf1N1B4_3490	0.26	-2.2
3,897,970	+		Pf1N1B4_3490	0.26	-0.1
3,897,970	+		Pf1N1B4_3490	0.26	+0.8
3,897,970	+				-0.1
3,897,971	-		Pf1N1B4_3490	0.26	-0.6
3,897,971	-		Pf1N1B4_3490	0.26	-2.1
3,897,971	-		Pf1N1B4_3490	0.26	+0.6
3,897,971	-		Pf1N1B4_3490	0.26	-1.9
3,897,979	+		Pf1N1B4_3490	0.27	-0.1
3,897,979	+		Pf1N1B4_3490	0.27	+0.0
3,897,979	+				-1.1
3,897,980	-		Pf1N1B4_3490	0.27	-0.1
3,897,989	-		Pf1N1B4_3490	0.29	-1.4
3,897,989	-		Pf1N1B4_3490	0.29	-1.1