Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_328
Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Sisomicin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
386,938 | + | -1.2 | |||
386,939 | - | +1.8 | |||
386,940 | + | +0.8 | |||
387,303 | + | +0.2 | |||
387,304 | - | +1.2 | |||
387,305 | + | -0.5 | |||
387,453 | + | +0.1 | |||
387,722 | - | Pf1N1B4_328 | 0.29 | +2.9 | |
387,755 | + | Pf1N1B4_328 | 0.31 | +0.7 | |
387,770 | + | Pf1N1B4_328 | 0.33 | +1.5 | |
387,967 | + | Pf1N1B4_328 | 0.48 | -0.5 | |
387,967 | + | Pf1N1B4_328 | 0.48 | +1.3 | |
387,979 | - | Pf1N1B4_328 | 0.49 | +0.8 | |
388,032 | - | Pf1N1B4_328 | 0.53 | +1.3 | |
388,036 | - | Pf1N1B4_328 | 0.54 | +1.0 | |
388,174 | - | Pf1N1B4_328 | 0.64 | +0.8 | |
388,268 | + | Pf1N1B4_328 | 0.72 | -0.4 | |
388,273 | - | Pf1N1B4_328 | 0.72 | +1.6 | |
388,385 | + | Pf1N1B4_328 | 0.81 | +1.8 | |
388,461 | + | Pf1N1B4_328 | 0.87 | -0.7 | |
388,461 | + | Pf1N1B4_328 | 0.87 | +1.0 | |
388,540 | + | +1.3 | |||
388,541 | - | +0.8 | |||
388,541 | - | +0.2 | |||
388,541 | - | +1.2 | |||
388,606 | + | -2.0 | |||
388,607 | - | -1.5 | |||
388,628 | + | +0.4 | |||
388,789 | - | +1.3 | |||
388,941 | - | +1.3 | |||
388,991 | + | +0.3 | |||
389,131 | - | -2.6 | |||
389,132 | + | +1.0 | |||
389,133 | - | +0.3 | |||
389,251 | - | -0.1 | |||
389,304 | - | Pf1N1B4_329 | 0.14 | +0.6 | |
389,617 | - | -0.7 |
Or see this region's nucleotide sequence