Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2641 and Pf1N1B4_2642 are separated by 1 nucleotides Pf1N1B4_2642 and Pf1N1B4_2643 are separated by 136 nucleotides Pf1N1B4_2643 and Pf1N1B4_2644 are separated by 134 nucleotides Pf1N1B4_2644 and Pf1N1B4_2645 are separated by 115 nucleotides
Pf1N1B4_2641 - ABC-type antimicrobial peptide transport system, permease component, at 2,980,694 to 2,981,959
_2641
Pf1N1B4_2642 - Methionine ABC transporter ATP-binding protein, at 2,981,961 to 2,982,671
_2642
Pf1N1B4_2643 - Predicted zinc-binding protein, at 2,982,808 to 2,983,401
_2643
Pf1N1B4_2644 - FIG00954755: hypothetical protein, at 2,983,536 to 2,983,883
_2644
Pf1N1B4_2645 - FIG000875: Thioredoxin domain-containing protein EC-YbbN, at 2,983,999 to 2,984,871
_2645
Position (kb)
2982
2983
2984 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2981.942 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.955 kb on + strand at 2981.956 kb on - strand at 2981.956 kb on - strand at 2981.956 kb on - strand at 2981.956 kb on - strand at 2981.956 kb on - strand at 2981.956 kb on - strand at 2981.956 kb on - strand at 2982.121 kb on + strand, within Pf1N1B4_2642 at 2982.122 kb on - strand, within Pf1N1B4_2642 at 2982.409 kb on + strand, within Pf1N1B4_2642 at 2982.410 kb on - strand, within Pf1N1B4_2642 at 2982.584 kb on + strand, within Pf1N1B4_2642 at 2982.584 kb on + strand, within Pf1N1B4_2642 at 2982.584 kb on + strand, within Pf1N1B4_2642 at 2982.584 kb on + strand, within Pf1N1B4_2642 at 2982.752 kb on + strand at 2982.752 kb on + strand at 2982.752 kb on + strand at 2982.752 kb on + strand at 2982.752 kb on + strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.753 kb on - strand at 2982.838 kb on + strand at 2982.838 kb on + strand at 2982.838 kb on + strand at 2982.839 kb on - strand at 2982.839 kb on - strand at 2982.839 kb on - strand at 2982.915 kb on + strand, within Pf1N1B4_2643 at 2982.915 kb on + strand, within Pf1N1B4_2643 at 2982.969 kb on - strand, within Pf1N1B4_2643 at 2983.419 kb on + strand at 2983.419 kb on + strand at 2983.420 kb on - strand at 2983.420 kb on - strand at 2983.518 kb on + strand at 2983.519 kb on - strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.535 kb on + strand at 2983.536 kb on - strand at 2983.536 kb on - strand at 2983.536 kb on - strand at 2983.536 kb on - strand at 2983.536 kb on - strand at 2983.536 kb on - strand at 2983.536 kb on - strand at 2983.850 kb on + strand at 2983.851 kb on - strand at 2983.860 kb on + strand at 2983.860 kb on + strand at 2983.860 kb on + strand at 2983.881 kb on + strand at 2983.882 kb on - strand at 2983.882 kb on - strand at 2983.912 kb on - strand at 2983.948 kb on - strand at 2983.961 kb on - strand at 2983.961 kb on - strand at 2983.961 kb on - strand at 2983.961 kb on - strand at 2983.970 kb on + strand at 2983.971 kb on - strand at 2983.971 kb on - strand at 2983.971 kb on - strand at 2983.971 kb on - strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.000 kb on + strand at 2984.001 kb on - strand at 2984.001 kb on - strand at 2984.001 kb on - strand at 2984.003 kb on + strand at 2984.003 kb on + strand at 2984.003 kb on + strand at 2984.003 kb on + strand at 2984.004 kb on - strand at 2984.004 kb on - strand at 2984.030 kb on + strand at 2984.030 kb on + strand at 2984.108 kb on + strand, within Pf1N1B4_2645 at 2984.108 kb on + strand, within Pf1N1B4_2645 at 2984.109 kb on - strand, within Pf1N1B4_2645 at 2984.109 kb on - strand, within Pf1N1B4_2645 at 2984.159 kb on + strand, within Pf1N1B4_2645 at 2984.159 kb on + strand, within Pf1N1B4_2645 at 2984.196 kb on - strand, within Pf1N1B4_2645 at 2984.393 kb on + strand, within Pf1N1B4_2645
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 2,981,942 + -0.2 2,981,955 + -0.2 2,981,955 + +0.4 2,981,955 + +2.0 2,981,955 + -0.6 2,981,955 + +1.1 2,981,955 + -0.6 2,981,955 + -0.2 2,981,955 + -0.2 2,981,955 + +0.2 2,981,955 + -1.3 2,981,955 + -0.4 2,981,955 + +1.1 2,981,955 + +0.2 2,981,955 + -0.4 2,981,956 - +0.4 2,981,956 - -0.9 2,981,956 - -0.9 2,981,956 - +1.0 2,981,956 - -0.2 2,981,956 - +1.8 2,981,956 - +1.4 2,982,121 + Pf1N1B4_2642 0.23 -0.2 2,982,122 - Pf1N1B4_2642 0.23 -0.2 2,982,409 + Pf1N1B4_2642 0.63 +1.0 2,982,410 - Pf1N1B4_2642 0.63 -0.0 2,982,584 + Pf1N1B4_2642 0.88 +0.4 2,982,584 + Pf1N1B4_2642 0.88 -1.8 2,982,584 + Pf1N1B4_2642 0.88 +1.1 2,982,584 + Pf1N1B4_2642 0.88 -0.6 2,982,752 + -0.4 2,982,752 + -1.2 2,982,752 + +0.8 2,982,752 + -1.8 2,982,752 + -1.8 2,982,753 - +1.4 2,982,753 - -0.6 2,982,753 - -0.1 2,982,753 - +0.0 2,982,753 - -1.4 2,982,753 - -0.9 2,982,753 - +0.8 2,982,753 - -0.2 2,982,753 - -0.5 2,982,753 - -0.2 2,982,753 - -0.4 2,982,838 + +0.1 2,982,838 + -0.0 2,982,838 + +0.8 2,982,839 - +1.4 2,982,839 - -0.4 2,982,839 - -0.9 2,982,915 + Pf1N1B4_2643 0.18 -0.8 2,982,915 + Pf1N1B4_2643 0.18 -1.4 2,982,969 - Pf1N1B4_2643 0.27 -0.9 2,983,419 + -0.6 2,983,419 + +0.3 2,983,420 - -0.2 2,983,420 - -0.2 2,983,518 + +0.4 2,983,519 - +1.2 2,983,535 + +1.4 2,983,535 + +0.7 2,983,535 + -0.9 2,983,535 + +1.4 2,983,535 + +0.9 2,983,535 + -1.4 2,983,535 + -1.2 2,983,535 + +1.2 2,983,535 + -0.8 2,983,535 + +1.1 2,983,535 + -1.4 2,983,535 + -0.4 2,983,535 + -0.3 2,983,536 - +1.4 2,983,536 - +0.6 2,983,536 - +0.2 2,983,536 - +1.4 2,983,536 - +0.9 2,983,536 - -0.2 2,983,536 - +0.7 2,983,850 + +0.7 2,983,851 - +0.9 2,983,860 + -0.3 2,983,860 + +1.4 2,983,860 + -1.6 2,983,881 + -0.8 2,983,882 - +0.1 2,983,882 - -0.6 2,983,912 - +2.0 2,983,948 - -1.6 2,983,961 - -0.6 2,983,961 - -1.9 2,983,961 - -0.6 2,983,961 - +1.4 2,983,970 + -1.9 2,983,971 - -1.4 2,983,971 - -0.6 2,983,971 - +0.4 2,983,971 - -0.8 2,984,000 + -0.6 2,984,000 + +1.0 2,984,000 + +2.0 2,984,000 + -0.5 2,984,000 + -0.8 2,984,000 + -0.2 2,984,000 + +1.0 2,984,001 - +0.4 2,984,001 - +1.0 2,984,001 - +0.2 2,984,003 + +0.5 2,984,003 + +1.0 2,984,003 + -1.6 2,984,003 + -1.2 2,984,004 - +0.4 2,984,004 - -0.9 2,984,030 + +0.7 2,984,030 + -1.2 2,984,108 + Pf1N1B4_2645 0.12 +0.1 2,984,108 + Pf1N1B4_2645 0.12 -0.8 2,984,109 - Pf1N1B4_2645 0.13 -1.2 2,984,109 - Pf1N1B4_2645 0.13 +0.1 2,984,159 + Pf1N1B4_2645 0.18 +0.2 2,984,159 + Pf1N1B4_2645 0.18 +1.0 2,984,196 - Pf1N1B4_2645 0.23 -1.1 2,984,393 + Pf1N1B4_2645 0.45 +0.4
Or see this region's nucleotide sequence