Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01750 and CCNA_01751 overlap by 4 nucleotides CCNA_01751 and CCNA_01752 are separated by 3 nucleotides CCNA_01752 and CCNA_01753 overlap by 8 nucleotides
CCNA_01750: CCNA_01750 - 3-oxoacyl-(acyl-carrier-protein) synthase II, at 1,877,432 to 1,878,712
_01750
CCNA_01751: CCNA_01751 - aminodeoxychorismate lyase, at 1,878,709 to 1,879,809
_01751
CCNA_01752: CCNA_01752 - YicC-family protein, at 1,879,813 to 1,880,694
_01752
CCNA_01753: CCNA_01753 - guanylate kinase, at 1,880,687 to 1,881,328
_01753
Position (kb)
1878
1879
1880 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1878.849 kb on + strand, within CCNA_01751 at 1878.921 kb on + strand, within CCNA_01751 at 1878.956 kb on + strand, within CCNA_01751 at 1879.209 kb on + strand, within CCNA_01751 at 1879.235 kb on + strand, within CCNA_01751 at 1879.243 kb on + strand, within CCNA_01751 at 1879.243 kb on + strand, within CCNA_01751 at 1879.557 kb on + strand, within CCNA_01751 at 1879.565 kb on - strand, within CCNA_01751 at 1879.565 kb on - strand, within CCNA_01751 at 1879.649 kb on + strand, within CCNA_01751 at 1879.713 kb on - strand at 1879.824 kb on + strand at 1879.853 kb on - strand at 1879.983 kb on + strand, within CCNA_01752 at 1879.991 kb on - strand, within CCNA_01752 at 1879.991 kb on - strand, within CCNA_01752 at 1879.991 kb on - strand, within CCNA_01752 at 1880.062 kb on + strand, within CCNA_01752 at 1880.121 kb on + strand, within CCNA_01752 at 1880.153 kb on - strand, within CCNA_01752 at 1880.153 kb on - strand, within CCNA_01752 at 1880.202 kb on + strand, within CCNA_01752 at 1880.334 kb on + strand, within CCNA_01752 at 1880.340 kb on + strand, within CCNA_01752 at 1880.342 kb on - strand, within CCNA_01752 at 1880.342 kb on - strand, within CCNA_01752 at 1880.376 kb on + strand, within CCNA_01752 at 1880.393 kb on + strand, within CCNA_01752 at 1880.393 kb on + strand, within CCNA_01752 at 1880.403 kb on + strand, within CCNA_01752 at 1880.479 kb on + strand, within CCNA_01752 at 1880.479 kb on + strand, within CCNA_01752 at 1880.487 kb on - strand, within CCNA_01752 at 1880.523 kb on + strand, within CCNA_01752 at 1880.523 kb on + strand, within CCNA_01752 at 1880.567 kb on + strand, within CCNA_01752 at 1880.586 kb on + strand, within CCNA_01752 at 1880.623 kb on - strand at 1880.623 kb on - strand at 1880.636 kb on + strand at 1880.644 kb on - strand at 1880.651 kb on - strand at 1880.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 1,878,849 + CCNA_01751 0.13 +2.8 1,878,921 + CCNA_01751 0.19 +2.9 1,878,956 + CCNA_01751 0.22 +2.5 1,879,209 + CCNA_01751 0.45 +2.8 1,879,235 + CCNA_01751 0.48 +2.7 1,879,243 + CCNA_01751 0.49 +1.9 1,879,243 + CCNA_01751 0.49 +2.9 1,879,557 + CCNA_01751 0.77 +2.8 1,879,565 - CCNA_01751 0.78 -0.2 1,879,565 - CCNA_01751 0.78 +0.4 1,879,649 + CCNA_01751 0.85 +3.2 1,879,713 - +4.0 1,879,824 + +1.6 1,879,853 - +0.6 1,879,983 + CCNA_01752 0.19 +1.5 1,879,991 - CCNA_01752 0.20 -0.4 1,879,991 - CCNA_01752 0.20 -1.4 1,879,991 - CCNA_01752 0.20 -0.2 1,880,062 + CCNA_01752 0.28 +2.2 1,880,121 + CCNA_01752 0.35 +2.0 1,880,153 - CCNA_01752 0.39 +0.0 1,880,153 - CCNA_01752 0.39 +0.5 1,880,202 + CCNA_01752 0.44 +0.9 1,880,334 + CCNA_01752 0.59 +0.7 1,880,340 + CCNA_01752 0.60 +1.6 1,880,342 - CCNA_01752 0.60 -0.5 1,880,342 - CCNA_01752 0.60 -0.1 1,880,376 + CCNA_01752 0.64 +1.0 1,880,393 + CCNA_01752 0.66 +1.2 1,880,393 + CCNA_01752 0.66 +0.6 1,880,403 + CCNA_01752 0.67 +1.3 1,880,479 + CCNA_01752 0.76 +1.7 1,880,479 + CCNA_01752 0.76 +1.6 1,880,487 - CCNA_01752 0.76 +1.1 1,880,523 + CCNA_01752 0.80 -0.7 1,880,523 + CCNA_01752 0.80 +2.2 1,880,567 + CCNA_01752 0.85 +1.4 1,880,586 + CCNA_01752 0.88 +1.2 1,880,623 - +0.2 1,880,623 - +3.2 1,880,636 + +0.5 1,880,644 - +0.0 1,880,651 - -1.3 1,880,659 - +0.5
Or see this region's nucleotide sequence