Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01580 and CCNA_01581 are separated by 108 nucleotides CCNA_01581 and CCNA_01582 are separated by 114 nucleotides CCNA_01582 and CCNA_01583 are separated by 69 nucleotides
CCNA_01580: CCNA_01580 - M15 superfamily membrane peptidase, at 1,696,883 to 1,697,533
_01580
CCNA_01581: CCNA_01581 - hypothetical protein, at 1,697,642 to 1,697,974
_01581
CCNA_01582: CCNA_01582 - Glutathione-dependent formaldehyde-activating enzyme, at 1,698,089 to 1,698,451
_01582
CCNA_01583: CCNA_01583 - phosphate-binding protein, at 1,698,521 to 1,699,561
_01583
CCNA_03954: CCNA_03954 - hypothetical protein, at 1,699,323 to 1,699,610
_03954
Position (kb)
1698
1699 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1697.091 kb on + strand, within CCNA_01580 at 1697.091 kb on + strand, within CCNA_01580 at 1697.091 kb on + strand, within CCNA_01580 at 1697.094 kb on - strand, within CCNA_01580 at 1697.098 kb on + strand, within CCNA_01580 at 1697.099 kb on - strand, within CCNA_01580 at 1697.147 kb on - strand, within CCNA_01580 at 1697.159 kb on + strand, within CCNA_01580 at 1697.182 kb on + strand, within CCNA_01580 at 1697.182 kb on + strand, within CCNA_01580 at 1697.216 kb on + strand, within CCNA_01580 at 1697.238 kb on + strand, within CCNA_01580 at 1697.246 kb on - strand, within CCNA_01580 at 1697.246 kb on - strand, within CCNA_01580 at 1697.246 kb on - strand, within CCNA_01580 at 1697.270 kb on + strand, within CCNA_01580 at 1697.277 kb on + strand, within CCNA_01580 at 1697.278 kb on - strand, within CCNA_01580 at 1697.278 kb on - strand, within CCNA_01580 at 1697.545 kb on + strand at 1697.584 kb on + strand at 1697.612 kb on - strand at 1697.634 kb on + strand at 1697.634 kb on + strand at 1697.644 kb on - strand at 1697.644 kb on - strand at 1697.651 kb on + strand at 1697.669 kb on + strand at 1697.760 kb on + strand, within CCNA_01581 at 1697.773 kb on - strand, within CCNA_01581 at 1697.829 kb on - strand, within CCNA_01581 at 1697.850 kb on - strand, within CCNA_01581 at 1697.850 kb on - strand, within CCNA_01581 at 1698.002 kb on - strand at 1698.018 kb on + strand at 1698.018 kb on + strand at 1698.126 kb on + strand, within CCNA_01582 at 1698.136 kb on + strand, within CCNA_01582 at 1698.237 kb on - strand, within CCNA_01582 at 1698.389 kb on - strand, within CCNA_01582 at 1698.396 kb on - strand, within CCNA_01582 at 1698.406 kb on + strand, within CCNA_01582 at 1698.421 kb on + strand at 1698.429 kb on - strand at 1698.721 kb on - strand, within CCNA_01583 at 1698.721 kb on - strand, within CCNA_01583 at 1698.762 kb on + strand, within CCNA_01583 at 1698.895 kb on - strand, within CCNA_01583 at 1699.027 kb on + strand, within CCNA_01583 at 1699.036 kb on + strand at 1699.044 kb on + strand, within CCNA_01583 at 1699.152 kb on - strand, within CCNA_01583 at 1699.164 kb on + strand, within CCNA_01583 at 1699.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 1,697,091 + CCNA_01580 0.32 +3.1 1,697,091 + CCNA_01580 0.32 +2.8 1,697,091 + CCNA_01580 0.32 +1.0 1,697,094 - CCNA_01580 0.32 +1.6 1,697,098 + CCNA_01580 0.33 +0.1 1,697,099 - CCNA_01580 0.33 +1.0 1,697,147 - CCNA_01580 0.41 +0.0 1,697,159 + CCNA_01580 0.42 +0.2 1,697,182 + CCNA_01580 0.46 +1.7 1,697,182 + CCNA_01580 0.46 +2.0 1,697,216 + CCNA_01580 0.51 +1.9 1,697,238 + CCNA_01580 0.55 +1.8 1,697,246 - CCNA_01580 0.56 +0.5 1,697,246 - CCNA_01580 0.56 +0.6 1,697,246 - CCNA_01580 0.56 -0.6 1,697,270 + CCNA_01580 0.59 +1.5 1,697,277 + CCNA_01580 0.61 +0.9 1,697,278 - CCNA_01580 0.61 +1.2 1,697,278 - CCNA_01580 0.61 +1.2 1,697,545 + +0.8 1,697,584 + +0.4 1,697,612 - +1.8 1,697,634 + -0.4 1,697,634 + +0.5 1,697,644 - -1.8 1,697,644 - -0.6 1,697,651 + +0.2 1,697,669 + -1.4 1,697,760 + CCNA_01581 0.35 +2.6 1,697,773 - CCNA_01581 0.39 +1.4 1,697,829 - CCNA_01581 0.56 -1.0 1,697,850 - CCNA_01581 0.62 -0.5 1,697,850 - CCNA_01581 0.62 -0.2 1,698,002 - -0.6 1,698,018 + +0.3 1,698,018 + -0.6 1,698,126 + CCNA_01582 0.10 -1.5 1,698,136 + CCNA_01582 0.13 -0.7 1,698,237 - CCNA_01582 0.41 +1.6 1,698,389 - CCNA_01582 0.83 -0.7 1,698,396 - CCNA_01582 0.85 +0.5 1,698,406 + CCNA_01582 0.87 -1.0 1,698,421 + +1.0 1,698,429 - +0.6 1,698,721 - CCNA_01583 0.19 +1.0 1,698,721 - CCNA_01583 0.19 +1.6 1,698,762 + CCNA_01583 0.23 +0.6 1,698,895 - CCNA_01583 0.36 +2.3 1,699,027 + CCNA_01583 0.49 +1.2 1,699,036 + +3.4 1,699,044 + CCNA_01583 0.50 +1.1 1,699,152 - CCNA_01583 0.61 +2.2 1,699,164 + CCNA_01583 0.62 +2.3 1,699,342 - +2.4
Or see this region's nucleotide sequence