Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01360 and CCNA_01361 are separated by 187 nucleotides CCNA_01361 and CCNA_01362 overlap by 4 nucleotides CCNA_01362 and CCNA_01363 overlap by 4 nucleotides
CCNA_01360: CCNA_01360 - Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) (from data) , at 1,475,884 to 1,477,386
_01360
CCNA_01361: CCNA_01361 - PepSY superfamily protein, at 1,477,574 to 1,477,915
_01361
CCNA_01362: CCNA_01362 - two-component response regulator, at 1,477,912 to 1,478,580
_01362
CCNA_01363: CCNA_01363 - two-component sensor histidine kinase, at 1,478,577 to 1,479,935
_01363
Position (kb)
1477
1478 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1476.641 kb on + strand, within CCNA_01360 at 1476.649 kb on - strand, within CCNA_01360 at 1476.651 kb on + strand, within CCNA_01360 at 1476.651 kb on + strand, within CCNA_01360 at 1476.659 kb on - strand, within CCNA_01360 at 1476.672 kb on + strand, within CCNA_01360 at 1476.690 kb on + strand, within CCNA_01360 at 1476.752 kb on - strand, within CCNA_01360 at 1476.770 kb on + strand at 1476.770 kb on + strand, within CCNA_01360 at 1476.778 kb on - strand, within CCNA_01360 at 1476.800 kb on - strand, within CCNA_01360 at 1476.854 kb on - strand, within CCNA_01360 at 1476.858 kb on + strand, within CCNA_01360 at 1476.858 kb on + strand, within CCNA_01360 at 1476.894 kb on + strand, within CCNA_01360 at 1476.967 kb on + strand, within CCNA_01360 at 1476.991 kb on - strand, within CCNA_01360 at 1477.048 kb on + strand, within CCNA_01360 at 1477.107 kb on + strand, within CCNA_01360 at 1477.173 kb on + strand, within CCNA_01360 at 1477.181 kb on - strand, within CCNA_01360 at 1477.197 kb on - strand, within CCNA_01360 at 1477.197 kb on - strand, within CCNA_01360 at 1477.270 kb on + strand at 1477.279 kb on + strand at 1477.308 kb on + strand at 1477.308 kb on + strand at 1477.308 kb on + strand at 1477.316 kb on + strand at 1477.316 kb on - strand at 1477.409 kb on + strand at 1477.409 kb on + strand at 1477.417 kb on - strand at 1477.432 kb on + strand at 1477.508 kb on + strand at 1477.571 kb on + strand at 1477.577 kb on + strand at 1477.662 kb on + strand, within CCNA_01361 at 1477.780 kb on + strand, within CCNA_01361 at 1477.793 kb on - strand, within CCNA_01361 at 1477.801 kb on + strand, within CCNA_01361 at 1477.892 kb on + strand at 1477.892 kb on + strand at 1477.909 kb on + strand at 1477.951 kb on + strand at 1477.951 kb on + strand at 1478.025 kb on + strand, within CCNA_01362 at 1478.033 kb on - strand, within CCNA_01362 at 1478.038 kb on + strand, within CCNA_01362 at 1478.175 kb on + strand, within CCNA_01362 at 1478.183 kb on - strand, within CCNA_01362 at 1478.202 kb on + strand, within CCNA_01362 at 1478.275 kb on - strand, within CCNA_01362 at 1478.283 kb on - strand, within CCNA_01362 at 1478.287 kb on + strand, within CCNA_01362 at 1478.333 kb on + strand, within CCNA_01362 at 1478.333 kb on - strand, within CCNA_01362 at 1478.338 kb on + strand, within CCNA_01362 at 1478.338 kb on + strand, within CCNA_01362 at 1478.338 kb on + strand, within CCNA_01362 at 1478.338 kb on + strand, within CCNA_01362 at 1478.346 kb on - strand, within CCNA_01362 at 1478.405 kb on + strand, within CCNA_01362 at 1478.443 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.445 kb on + strand, within CCNA_01362 at 1478.453 kb on - strand, within CCNA_01362 at 1478.453 kb on - strand, within CCNA_01362 at 1478.453 kb on - strand, within CCNA_01362 at 1478.453 kb on - strand, within CCNA_01362 at 1478.453 kb on - strand, within CCNA_01362 at 1478.480 kb on - strand, within CCNA_01362 at 1478.514 kb on + strand at 1478.530 kb on + strand at 1478.545 kb on + strand at 1478.545 kb on + strand at 1478.553 kb on - strand at 1478.594 kb on - strand at 1478.709 kb on - strand at 1478.709 kb on - strand at 1478.721 kb on + strand, within CCNA_01363 at 1478.729 kb on - strand, within CCNA_01363 at 1478.729 kb on - strand, within CCNA_01363 at 1478.729 kb on - strand, within CCNA_01363 at 1478.789 kb on - strand, within CCNA_01363 at 1478.841 kb on + strand, within CCNA_01363 at 1478.907 kb on + strand, within CCNA_01363 at 1478.915 kb on - strand, within CCNA_01363
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 1,476,641 + CCNA_01360 0.50 +0.9 1,476,649 - CCNA_01360 0.51 +0.2 1,476,651 + CCNA_01360 0.51 +1.0 1,476,651 + CCNA_01360 0.51 -0.4 1,476,659 - CCNA_01360 0.52 +1.9 1,476,672 + CCNA_01360 0.52 +2.0 1,476,690 + CCNA_01360 0.54 +1.9 1,476,752 - CCNA_01360 0.58 +1.9 1,476,770 + +2.4 1,476,770 + CCNA_01360 0.59 +1.4 1,476,778 - CCNA_01360 0.59 -1.4 1,476,800 - CCNA_01360 0.61 +0.5 1,476,854 - CCNA_01360 0.65 -0.1 1,476,858 + CCNA_01360 0.65 -0.1 1,476,858 + CCNA_01360 0.65 +0.2 1,476,894 + CCNA_01360 0.67 -1.1 1,476,967 + CCNA_01360 0.72 +0.9 1,476,991 - CCNA_01360 0.74 +0.6 1,477,048 + CCNA_01360 0.77 +0.4 1,477,107 + CCNA_01360 0.81 +2.5 1,477,173 + CCNA_01360 0.86 -0.6 1,477,181 - CCNA_01360 0.86 +0.4 1,477,197 - CCNA_01360 0.87 -0.4 1,477,197 - CCNA_01360 0.87 -0.7 1,477,270 + +0.9 1,477,279 + +0.7 1,477,308 + -0.3 1,477,308 + +0.9 1,477,308 + +1.3 1,477,316 + +0.4 1,477,316 - +0.5 1,477,409 + -0.5 1,477,409 + +1.4 1,477,417 - +0.0 1,477,432 + +1.5 1,477,508 + +1.0 1,477,571 + -0.2 1,477,577 + -0.2 1,477,662 + CCNA_01361 0.26 +2.7 1,477,780 + CCNA_01361 0.60 +3.0 1,477,793 - CCNA_01361 0.64 -1.1 1,477,801 + CCNA_01361 0.66 +2.5 1,477,892 + +2.3 1,477,892 + +1.9 1,477,909 + +0.9 1,477,951 + +2.6 1,477,951 + -0.1 1,478,025 + CCNA_01362 0.17 -2.7 1,478,033 - CCNA_01362 0.18 +1.2 1,478,038 + CCNA_01362 0.19 -1.3 1,478,175 + CCNA_01362 0.39 +1.0 1,478,183 - CCNA_01362 0.41 +0.9 1,478,202 + CCNA_01362 0.43 -0.3 1,478,275 - CCNA_01362 0.54 -0.7 1,478,283 - CCNA_01362 0.55 +1.1 1,478,287 + CCNA_01362 0.56 +1.4 1,478,333 + CCNA_01362 0.63 -0.9 1,478,333 - CCNA_01362 0.63 -0.1 1,478,338 + CCNA_01362 0.64 -0.2 1,478,338 + CCNA_01362 0.64 -1.4 1,478,338 + CCNA_01362 0.64 +0.9 1,478,338 + CCNA_01362 0.64 +0.5 1,478,346 - CCNA_01362 0.65 +0.0 1,478,405 + CCNA_01362 0.74 -0.4 1,478,443 + CCNA_01362 0.79 +0.8 1,478,445 + CCNA_01362 0.80 +1.1 1,478,445 + CCNA_01362 0.80 +0.2 1,478,445 + CCNA_01362 0.80 -2.0 1,478,445 + CCNA_01362 0.80 -0.3 1,478,445 + CCNA_01362 0.80 -0.5 1,478,445 + CCNA_01362 0.80 -0.6 1,478,445 + CCNA_01362 0.80 +1.3 1,478,445 + CCNA_01362 0.80 +2.4 1,478,445 + CCNA_01362 0.80 +0.2 1,478,453 - CCNA_01362 0.81 -1.2 1,478,453 - CCNA_01362 0.81 +0.1 1,478,453 - CCNA_01362 0.81 +0.4 1,478,453 - CCNA_01362 0.81 +2.4 1,478,453 - CCNA_01362 0.81 -0.9 1,478,480 - CCNA_01362 0.85 -1.7 1,478,514 + +1.2 1,478,530 + -0.1 1,478,545 + -0.9 1,478,545 + +0.5 1,478,553 - +0.7 1,478,594 - -1.9 1,478,709 - -1.6 1,478,709 - +0.1 1,478,721 + CCNA_01363 0.11 +0.3 1,478,729 - CCNA_01363 0.11 +0.2 1,478,729 - CCNA_01363 0.11 +1.4 1,478,729 - CCNA_01363 0.11 +0.7 1,478,789 - CCNA_01363 0.16 +0.5 1,478,841 + CCNA_01363 0.19 -0.3 1,478,907 + CCNA_01363 0.24 +2.5 1,478,915 - CCNA_01363 0.25 -0.9
Or see this region's nucleotide sequence