Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01187

Experiment: PYE with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01185 and CCNA_01186 are separated by 261 nucleotidesCCNA_01186 and CCNA_01187 are separated by 172 nucleotidesCCNA_01187 and CCNA_01188 overlap by 4 nucleotides CCNA_01185: CCNA_01185 - hypothetical protein, at 1,304,093 to 1,304,443 _01185 CCNA_01186: CCNA_01186 - hypothetical protein, at 1,304,705 to 1,305,016 _01186 CCNA_01187: CCNA_01187 - RNA polymerase ECF-type sigma factor, at 1,305,189 to 1,305,740 _01187 CCNA_01188: CCNA_01188 - FecR family protein, at 1,305,737 to 1,306,660 _01188 Position (kb) 1305 1306Strain fitness (log2 ratio) -2 -1 0 1 2at 1304.202 kb on - strand, within CCNA_01185at 1304.212 kb on - strand, within CCNA_01185at 1304.229 kb on + strand, within CCNA_01185at 1304.229 kb on + strand, within CCNA_01185at 1304.237 kb on - strand, within CCNA_01185at 1304.237 kb on - strand, within CCNA_01185at 1304.237 kb on - strand, within CCNA_01185at 1304.280 kb on - strand, within CCNA_01185at 1304.296 kb on + strand, within CCNA_01185at 1304.319 kb on + strand, within CCNA_01185at 1304.319 kb on + strand, within CCNA_01185at 1304.327 kb on - strand, within CCNA_01185at 1304.399 kb on + strand, within CCNA_01185at 1304.399 kb on + strand, within CCNA_01185at 1304.404 kb on + strand, within CCNA_01185at 1304.407 kb on - strand, within CCNA_01185at 1304.444 kb on + strandat 1304.452 kb on - strandat 1304.492 kb on - strandat 1304.585 kb on + strandat 1304.653 kb on + strandat 1304.653 kb on + strandat 1304.684 kb on + strandat 1304.693 kb on + strandat 1304.721 kb on + strandat 1304.842 kb on + strand, within CCNA_01186at 1304.842 kb on + strand, within CCNA_01186at 1304.842 kb on + strand, within CCNA_01186at 1304.842 kb on + strand, within CCNA_01186at 1304.850 kb on - strand, within CCNA_01186at 1304.850 kb on - strand, within CCNA_01186at 1304.854 kb on + strand, within CCNA_01186at 1304.884 kb on - strand, within CCNA_01186at 1304.886 kb on + strand, within CCNA_01186at 1304.912 kb on - strand, within CCNA_01186at 1305.052 kb on + strandat 1305.057 kb on + strandat 1305.070 kb on + strandat 1305.090 kb on + strandat 1305.118 kb on + strandat 1305.126 kb on - strandat 1305.164 kb on + strandat 1305.181 kb on + strandat 1305.181 kb on + strandat 1305.181 kb on + strandat 1305.189 kb on - strandat 1305.206 kb on + strandat 1305.218 kb on + strandat 1305.234 kb on - strandat 1305.241 kb on - strandat 1305.271 kb on + strand, within CCNA_01187at 1305.271 kb on + strand, within CCNA_01187at 1305.279 kb on - strand, within CCNA_01187at 1305.279 kb on - strand, within CCNA_01187at 1305.279 kb on - strand, within CCNA_01187at 1305.303 kb on - strand, within CCNA_01187at 1305.303 kb on - strand, within CCNA_01187at 1305.315 kb on + strand, within CCNA_01187at 1305.323 kb on - strand, within CCNA_01187at 1305.327 kb on + strand, within CCNA_01187at 1305.345 kb on - strand, within CCNA_01187at 1305.347 kb on + strand, within CCNA_01187at 1305.348 kb on + strand, within CCNA_01187at 1305.353 kb on + strand, within CCNA_01187at 1305.355 kb on - strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.365 kb on + strand, within CCNA_01187at 1305.373 kb on - strand, within CCNA_01187at 1305.373 kb on - strand, within CCNA_01187at 1305.395 kb on + strand, within CCNA_01187at 1305.409 kb on + strand, within CCNA_01187at 1305.409 kb on + strand, within CCNA_01187at 1305.409 kb on + strand, within CCNA_01187at 1305.474 kb on + strand, within CCNA_01187at 1305.487 kb on - strand, within CCNA_01187at 1305.549 kb on - strand, within CCNA_01187at 1305.553 kb on - strand, within CCNA_01187at 1305.579 kb on + strand, within CCNA_01187at 1305.630 kb on + strand, within CCNA_01187at 1305.630 kb on + strand, within CCNA_01187at 1305.631 kb on + strand, within CCNA_01187at 1305.723 kb on + strandat 1305.734 kb on + strandat 1305.761 kb on + strandat 1305.773 kb on + strandat 1305.799 kb on + strandat 1305.856 kb on + strand, within CCNA_01188at 1305.857 kb on + strand, within CCNA_01188at 1305.876 kb on + strand, within CCNA_01188at 1305.969 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1305.971 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.018 kb on + strand, within CCNA_01188at 1306.026 kb on - strand, within CCNA_01188at 1306.026 kb on - strand, within CCNA_01188at 1306.026 kb on - strand, within CCNA_01188at 1306.026 kb on - strand, within CCNA_01188at 1306.026 kb on - strand, within CCNA_01188at 1306.033 kb on + strand, within CCNA_01188at 1306.036 kb on - strand, within CCNA_01188at 1306.036 kb on - strand, within CCNA_01188at 1306.038 kb on + strand, within CCNA_01188at 1306.040 kb on - strand, within CCNA_01188at 1306.042 kb on + strand, within CCNA_01188at 1306.042 kb on + strand, within CCNA_01188at 1306.089 kb on + strand, within CCNA_01188at 1306.096 kb on + strand, within CCNA_01188at 1306.104 kb on - strand, within CCNA_01188at 1306.105 kb on + strand, within CCNA_01188at 1306.109 kb on - strand, within CCNA_01188at 1306.170 kb on - strand, within CCNA_01188at 1306.170 kb on - strand, within CCNA_01188at 1306.199 kb on - strand, within CCNA_01188at 1306.215 kb on + strand, within CCNA_01188at 1306.215 kb on + strand, within CCNA_01188at 1306.215 kb on + strand, within CCNA_01188at 1306.223 kb on - strand, within CCNA_01188at 1306.317 kb on + strand, within CCNA_01188at 1306.317 kb on + strand, within CCNA_01188at 1306.339 kb on - strand, within CCNA_01188at 1306.434 kb on + strand, within CCNA_01188at 1306.447 kb on + strand, within CCNA_01188at 1306.461 kb on + strand, within CCNA_01188at 1306.466 kb on + strand, within CCNA_01188at 1306.466 kb on + strand, within CCNA_01188at 1306.469 kb on - strand, within CCNA_01188at 1306.540 kb on - strand, within CCNA_01188at 1306.633 kb on + strandat 1306.641 kb on + strandat 1306.691 kb on + strandat 1306.699 kb on - strandat 1306.714 kb on + strandat 1306.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM
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1,304,202 - CCNA_01185 0.31 +1.3
1,304,212 - CCNA_01185 0.34 +0.7
1,304,229 + CCNA_01185 0.39 +0.3
1,304,229 + CCNA_01185 0.39 +1.3
1,304,237 - CCNA_01185 0.41 -0.2
1,304,237 - CCNA_01185 0.41 -1.0
1,304,237 - CCNA_01185 0.41 +0.2
1,304,280 - CCNA_01185 0.53 -1.5
1,304,296 + CCNA_01185 0.58 +0.9
1,304,319 + CCNA_01185 0.64 +0.9
1,304,319 + CCNA_01185 0.64 +0.3
1,304,327 - CCNA_01185 0.67 -0.6
1,304,399 + CCNA_01185 0.87 -2.0
1,304,399 + CCNA_01185 0.87 -0.0
1,304,404 + CCNA_01185 0.89 +1.6
1,304,407 - CCNA_01185 0.89 +0.0
1,304,444 + +0.9
1,304,452 - +0.7
1,304,492 - -0.3
1,304,585 + -1.0
1,304,653 + -0.8
1,304,653 + +0.9
1,304,684 + +1.4
1,304,693 + -0.5
1,304,721 + +1.4
1,304,842 + CCNA_01186 0.44 +2.2
1,304,842 + CCNA_01186 0.44 +1.5
1,304,842 + CCNA_01186 0.44 +1.3
1,304,842 + CCNA_01186 0.44 +1.4
1,304,850 - CCNA_01186 0.46 +0.7
1,304,850 - CCNA_01186 0.46 +0.0
1,304,854 + CCNA_01186 0.48 +1.7
1,304,884 - CCNA_01186 0.57 +0.3
1,304,886 + CCNA_01186 0.58 +2.0
1,304,912 - CCNA_01186 0.66 +1.7
1,305,052 + +1.6
1,305,057 + +1.2
1,305,070 + -0.5
1,305,090 + +0.0
1,305,118 + -1.6
1,305,126 - +0.1
1,305,164 + +1.9
1,305,181 + -1.2
1,305,181 + +0.4
1,305,181 + +2.0
1,305,189 - +0.3
1,305,206 + -1.9
1,305,218 + +0.6
1,305,234 - -1.9
1,305,241 - +1.0
1,305,271 + CCNA_01187 0.15 +1.2
1,305,271 + CCNA_01187 0.15 -0.6
1,305,279 - CCNA_01187 0.16 -1.1
1,305,279 - CCNA_01187 0.16 +0.2
1,305,279 - CCNA_01187 0.16 -1.5
1,305,303 - CCNA_01187 0.21 +1.4
1,305,303 - CCNA_01187 0.21 -0.8
1,305,315 + CCNA_01187 0.23 -0.2
1,305,323 - CCNA_01187 0.24 +0.7
1,305,327 + CCNA_01187 0.25 -1.1
1,305,345 - CCNA_01187 0.28 -0.1
1,305,347 + CCNA_01187 0.29 -0.5
1,305,348 + CCNA_01187 0.29 -1.0
1,305,353 + CCNA_01187 0.30 +0.7
1,305,355 - CCNA_01187 0.30 -2.2
1,305,365 + CCNA_01187 0.32 +0.5
1,305,365 + CCNA_01187 0.32 +0.1
1,305,365 + CCNA_01187 0.32 +0.3
1,305,365 + CCNA_01187 0.32 -1.1
1,305,365 + CCNA_01187 0.32 -1.4
1,305,365 + CCNA_01187 0.32 -0.6
1,305,373 - CCNA_01187 0.33 +0.6
1,305,373 - CCNA_01187 0.33 -1.0
1,305,395 + CCNA_01187 0.37 -0.9
1,305,409 + CCNA_01187 0.40 -0.6
1,305,409 + CCNA_01187 0.40 -0.4
1,305,409 + CCNA_01187 0.40 -1.0
1,305,474 + CCNA_01187 0.52 +1.4
1,305,487 - CCNA_01187 0.54 -1.1
1,305,549 - CCNA_01187 0.65 -0.6
1,305,553 - CCNA_01187 0.66 +0.4
1,305,579 + CCNA_01187 0.71 -0.5
1,305,630 + CCNA_01187 0.80 -0.3
1,305,630 + CCNA_01187 0.80 -0.9
1,305,631 + CCNA_01187 0.80 -1.1
1,305,723 + +0.9
1,305,734 + +0.5
1,305,761 + +1.1
1,305,773 + +0.4
1,305,799 + +0.5
1,305,856 + CCNA_01188 0.13 +0.1
1,305,857 + CCNA_01188 0.13 +0.4
1,305,876 + CCNA_01188 0.15 +0.3
1,305,969 + CCNA_01188 0.25 +0.2
1,305,971 + CCNA_01188 0.25 +1.0
1,305,971 + CCNA_01188 0.25 -2.1
1,305,971 + CCNA_01188 0.25 +0.2
1,305,971 + CCNA_01188 0.25 -0.8
1,305,971 + CCNA_01188 0.25 +0.0
1,306,018 + CCNA_01188 0.30 -1.1
1,306,018 + CCNA_01188 0.30 +0.4
1,306,018 + CCNA_01188 0.30 +0.2
1,306,018 + CCNA_01188 0.30 -0.4
1,306,018 + CCNA_01188 0.30 -1.4
1,306,018 + CCNA_01188 0.30 +0.1
1,306,018 + CCNA_01188 0.30 -0.6
1,306,018 + CCNA_01188 0.30 +0.1
1,306,018 + CCNA_01188 0.30 +1.1
1,306,018 + CCNA_01188 0.30 -0.3
1,306,018 + CCNA_01188 0.30 +2.0
1,306,026 - CCNA_01188 0.31 +0.1
1,306,026 - CCNA_01188 0.31 -0.3
1,306,026 - CCNA_01188 0.31 +0.4
1,306,026 - CCNA_01188 0.31 -0.3
1,306,026 - CCNA_01188 0.31 +1.3
1,306,033 + CCNA_01188 0.32 +0.1
1,306,036 - CCNA_01188 0.32 -0.9
1,306,036 - CCNA_01188 0.32 -2.3
1,306,038 + CCNA_01188 0.33 -0.4
1,306,040 - CCNA_01188 0.33 +0.1
1,306,042 + CCNA_01188 0.33 +1.6
1,306,042 + CCNA_01188 0.33 -0.5
1,306,089 + CCNA_01188 0.38 -0.0
1,306,096 + CCNA_01188 0.39 +0.1
1,306,104 - CCNA_01188 0.40 -0.3
1,306,105 + CCNA_01188 0.40 -0.6
1,306,109 - CCNA_01188 0.40 +0.1
1,306,170 - CCNA_01188 0.47 -2.1
1,306,170 - CCNA_01188 0.47 -1.6
1,306,199 - CCNA_01188 0.50 -0.5
1,306,215 + CCNA_01188 0.52 +0.7
1,306,215 + CCNA_01188 0.52 -1.0
1,306,215 + CCNA_01188 0.52 +1.7
1,306,223 - CCNA_01188 0.53 -1.5
1,306,317 + CCNA_01188 0.63 -0.1
1,306,317 + CCNA_01188 0.63 +0.3
1,306,339 - CCNA_01188 0.65 -0.4
1,306,434 + CCNA_01188 0.75 -2.2
1,306,447 + CCNA_01188 0.77 -1.1
1,306,461 + CCNA_01188 0.78 -2.3
1,306,466 + CCNA_01188 0.79 +0.2
1,306,466 + CCNA_01188 0.79 -1.9
1,306,469 - CCNA_01188 0.79 -0.6
1,306,540 - CCNA_01188 0.87 -0.5
1,306,633 + -1.0
1,306,641 + -2.0
1,306,691 + -1.0
1,306,699 - -0.8
1,306,714 + -1.0
1,306,722 - -0.2

Or see this region's nucleotide sequence