Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01033

Experiment: PYE with Chloride 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloride 100 mM
1,121,002	+		CCNA_01031	0.79	+0.2
1,121,002	+		CCNA_01031	0.79	+0.7
1,121,002	+		CCNA_01031	0.79	-0.7
1,121,010	-		CCNA_01031	0.79	-0.3
1,121,010	-		CCNA_01031	0.79	-0.9
1,121,023	+		CCNA_01031	0.80	+0.7
1,121,093	-		CCNA_01031	0.84	+1.0
1,121,112	-		CCNA_01031	0.85	-0.3
1,121,137	+		CCNA_01031	0.87	-0.3
1,121,145	-		CCNA_01031	0.87	+0.1
1,121,160	+		CCNA_01031	0.88	-1.9
1,121,175	-		CCNA_01031	0.89	-0.2
1,121,192	+				-0.8
1,121,215	-				-0.5
1,121,224	-				-2.3
1,121,230	-				+0.3
1,121,274	-				+0.4
1,121,310	-				+0.5
1,121,324	-				-1.1
1,121,348	+				-0.0
1,121,425	+				-0.3
1,121,425	+				+1.4
1,121,427	+				-1.9
1,121,433	-				+0.2
1,121,433	-				-1.4
1,121,435	-				-0.6
1,121,440	-				+1.9
1,121,464	-				+1.2
1,121,519	+		CCNA_01032	0.13	+0.7
1,121,522	-		CCNA_01032	0.14	+1.0
1,121,524	-		CCNA_01032	0.14	-0.2
1,121,529	+		CCNA_01032	0.15	+0.1
1,121,537	-		CCNA_01032	0.16	-0.7
1,121,542	+		CCNA_01032	0.17	+1.7
1,121,547	+		CCNA_01032	0.18	-0.0
1,121,562	-		CCNA_01032	0.21	-2.4
1,121,575	+		CCNA_01032	0.23	+0.0
1,121,575	+		CCNA_01032	0.23	+0.1
1,121,575	+		CCNA_01032	0.23	+1.4
1,121,583	-		CCNA_01032	0.24	-0.1
1,121,583	-				+2.4
1,121,583	-		CCNA_01032	0.24	+0.6
1,121,583	-		CCNA_01032	0.24	-0.4
1,121,603	+		CCNA_01032	0.27	-2.8
1,121,647	+		CCNA_01032	0.35	+0.6
1,121,647	-		CCNA_01032	0.35	-0.1
1,121,652	+		CCNA_01032	0.36	-1.2
1,121,660	-		CCNA_01032	0.37	+0.5
1,121,683	-		CCNA_01032	0.41	-0.8
1,121,685	+		CCNA_01032	0.41	-0.4
1,121,686	+		CCNA_01032	0.41	+0.3
1,121,686	+		CCNA_01032	0.41	+0.2
1,121,686	+		CCNA_01032	0.41	+1.2
1,121,686	+		CCNA_01032	0.41	-0.1
1,121,694	-		CCNA_01032	0.43	-0.3
1,121,694	-		CCNA_01032	0.43	-1.0
1,121,694	-		CCNA_01032	0.43	-1.6
1,121,694	-		CCNA_01032	0.43	-0.3
1,121,696	+		CCNA_01032	0.43	+0.3
1,121,762	-		CCNA_01032	0.54	-0.0
1,121,778	-		CCNA_01032	0.57	+0.2
1,121,839	-		CCNA_01032	0.67	-0.2
1,121,848	+		CCNA_01032	0.69	-1.1
1,121,870	+		CCNA_01032	0.72	+0.2
1,121,873	-		CCNA_01032	0.73	-1.5
1,121,878	-		CCNA_01032	0.74	+0.2
1,121,894	-		CCNA_01032	0.76	-0.8
1,121,913	+		CCNA_01032	0.80	+1.5
1,121,913	-		CCNA_01032	0.80	+1.4
1,121,921	-		CCNA_01032	0.81	-1.2
1,121,947	-		CCNA_01032	0.85	-0.8
1,121,972	+		CCNA_01032	0.90	-0.9
1,121,973	+		CCNA_01032	0.90	+0.0
1,122,002	-				-0.1
1,122,002	-				+0.7
1,122,012	+				+0.1
1,122,028	+				+1.7
1,122,028	+				+0.7
1,122,028	+				+2.2
1,122,028	+				+1.1
1,122,036	-				-0.3
1,122,038	-				+0.2
1,122,040	+				+2.5
1,122,046	+				+2.1
1,122,052	+				+2.2
1,122,060	-				+0.5
1,122,077	+				+2.0
1,122,100	+		CCNA_01033	0.10	+2.4
1,122,108	+		CCNA_01033	0.11	+2.3
1,122,224	-		CCNA_01033	0.23	-1.1
1,122,269	+		CCNA_01033	0.27	-0.2
1,122,273	+		CCNA_01033	0.28	+0.0
1,122,292	-		CCNA_01033	0.30	-0.8
1,122,326	+		CCNA_01033	0.33	+1.0
1,122,326	+		CCNA_01033	0.33	+1.0
1,122,334	-		CCNA_01033	0.34	+0.4
1,122,350	+		CCNA_01033	0.35	+0.8
1,122,351	+		CCNA_01033	0.36	+0.5
1,122,358	-		CCNA_01033	0.36	+0.2
1,122,379	+		CCNA_01033	0.38	-0.1
1,122,382	+		CCNA_01033	0.39	+0.6
1,122,382	+		CCNA_01033	0.39	+0.3
1,122,387	-		CCNA_01033	0.39	-0.9
1,122,413	+		CCNA_01033	0.42	+1.7
1,122,419	-		CCNA_01033	0.42	-1.0
1,122,419	-		CCNA_01033	0.42	-0.0
1,122,419	-		CCNA_01033	0.42	-1.5
1,122,432	+		CCNA_01033	0.44	+1.2
1,122,456	-		CCNA_01033	0.46	-0.4
1,122,476	-		CCNA_01033	0.48	-0.3
1,122,499	-		CCNA_01033	0.50	+1.7
1,122,510	+		CCNA_01033	0.52	+1.7
1,122,518	-		CCNA_01033	0.52	+0.4
1,122,545	+		CCNA_01033	0.55	+1.0
1,122,553	-				+2.4
1,122,609	+		CCNA_01033	0.61	-0.3
1,122,643	+		CCNA_01033	0.65	+0.1
1,122,665	-		CCNA_01033	0.67	+0.4
1,122,667	+		CCNA_01033	0.67	+1.2
1,122,680	+		CCNA_01033	0.69	+2.3
1,122,692	+		CCNA_01033	0.70	+1.2
1,122,692	+		CCNA_01033	0.70	+2.0
1,122,700	-		CCNA_01033	0.71	+1.4
1,122,700	-		CCNA_01033	0.71	-0.4
1,122,731	+		CCNA_01033	0.74	+0.9
1,122,760	-		CCNA_01033	0.77	+0.5
1,122,783	+		CCNA_01033	0.79	+1.8
1,122,790	+		CCNA_01033	0.80	+0.7
1,122,818	-		CCNA_01033	0.82	+0.5
1,122,864	+		CCNA_01033	0.87	+0.7
1,122,877	-		CCNA_01033	0.88	+0.8
1,122,892	+		CCNA_01033	0.90	+1.8
1,122,900	-				+1.7
1,122,911	+				+1.7
1,122,918	+				+1.4
1,122,938	+				+1.7
1,122,995	-				-0.8
1,123,045	-				+0.3
1,123,057	-				+1.0
1,123,068	-				+0.5
1,123,093	+				+0.7
1,123,093	+				-0.6
1,123,116	+				-0.4
1,123,126	+				+1.3
1,123,189	-				+0.7
1,123,223	+				-0.5
1,123,223	+				+1.4
1,123,231	-				+0.2
1,123,236	+				+1.2
1,123,327	-				-1.1
1,123,339	+				-0.3
1,123,396	+				+0.4
1,123,404	+				-0.5
1,123,430	-				+0.8
1,123,499	+				+0.8
1,123,499	+				+0.5
1,123,499	+				+0.3
1,123,499	+				-2.0
1,123,507	-				+1.4
1,123,507	-				-0.5
1,123,507	-				+0.4
1,123,507	-				-1.1
1,123,507	-				-0.5
1,123,521	-				+0.1
1,123,552	+				-1.8
1,123,557	+				-0.3
1,123,563	-				-0.7
1,123,587	+		CCNA_01034	0.10	-1.2
1,123,617	-		CCNA_01034	0.11	-0.6
1,123,630	+		CCNA_01034	0.11	-1.1
1,123,669	+		CCNA_01034	0.13	-0.9
1,123,669	+		CCNA_01034	0.13	+0.5
1,123,677	-		CCNA_01034	0.13	+0.1
1,123,677	-		CCNA_01034	0.13	-0.5
1,123,677	-		CCNA_01034	0.13	+0.5
1,123,677	-		CCNA_01034	0.13	-1.1
1,123,731	-		CCNA_01034	0.14	-0.4
1,123,745	+		CCNA_01034	0.15	+3.0
1,123,745	+		CCNA_01034	0.15	+1.2
1,123,788	-		CCNA_01034	0.16	-0.7
1,123,788	-		CCNA_01034	0.16	-0.7
1,123,793	-		CCNA_01034	0.16	-1.0
1,123,795	+		CCNA_01034	0.16	+1.4
1,123,803	-		CCNA_01034	0.17	-0.4
1,123,813	-		CCNA_01034	0.17	+1.7
1,123,830	-		CCNA_01034	0.17	-0.3
1,123,851	+		CCNA_01034	0.18	+0.4
1,123,883	+		CCNA_01034	0.19	+0.3
1,123,889	+		CCNA_01034	0.19	-0.9
1,123,891	-		CCNA_01034	0.19	-1.3
1,123,951	+		CCNA_01034	0.21	+0.4
1,123,960	-		CCNA_01034	0.21	+1.7
1,123,969	-		CCNA_01034	0.22	-1.1