Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00740 and CCNA_00741 overlap by 1 nucleotides CCNA_00741 and CCNA_00742 are separated by 57 nucleotides
CCNA_00740: CCNA_00740 - riboflavin kinase/FMN adenylyltransferase, at 798,513 to 799,454
_00740
CCNA_00741: CCNA_00741 - 3-hydroxybutyryl-CoA dehydratase, at 799,454 to 799,879
_00741
CCNA_00742: CCNA_00742 - HAD superfamily sugar phosphatase, at 799,937 to 800,797
_00742
Position (kb)
799
800 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 798.485 kb on + strand at 798.501 kb on + strand at 798.508 kb on - strand at 798.511 kb on + strand at 798.511 kb on + strand at 798.519 kb on - strand at 798.519 kb on - strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.441 kb on + strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.481 kb on - strand at 799.516 kb on - strand, within CCNA_00741 at 799.517 kb on - strand, within CCNA_00741 at 799.543 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.607 kb on - strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.630 kb on + strand, within CCNA_00741 at 799.632 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.638 kb on - strand, within CCNA_00741 at 799.660 kb on + strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.689 kb on - strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.725 kb on + strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.730 kb on + strand, within CCNA_00741 at 799.753 kb on - strand, within CCNA_00741 at 799.772 kb on - strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.808 kb on - strand, within CCNA_00741 at 799.863 kb on + strand at 799.881 kb on - strand at 799.885 kb on + strand at 799.909 kb on + strand at 799.912 kb on - strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.917 kb on - strand at 799.917 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.946 kb on - strand at 799.979 kb on - strand at 799.985 kb on + strand at 799.985 kb on - strand at 799.993 kb on - strand at 800.054 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.193 kb on + strand, within CCNA_00742 at 800.198 kb on + strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.261 kb on - strand, within CCNA_00742 at 800.302 kb on - strand, within CCNA_00742 at 800.317 kb on - strand, within CCNA_00742 at 800.330 kb on - strand, within CCNA_00742 at 800.332 kb on - strand, within CCNA_00742 at 800.352 kb on + strand, within CCNA_00742 at 800.360 kb on - strand, within CCNA_00742 at 800.394 kb on + strand, within CCNA_00742 at 800.402 kb on - strand, within CCNA_00742 at 800.417 kb on - strand, within CCNA_00742 at 800.425 kb on - strand, within CCNA_00742 at 800.438 kb on - strand, within CCNA_00742 at 800.460 kb on - strand, within CCNA_00742 at 800.471 kb on - strand, within CCNA_00742 at 800.473 kb on - strand, within CCNA_00742 at 800.502 kb on + strand, within CCNA_00742 at 800.514 kb on + strand, within CCNA_00742 at 800.520 kb on + strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.555 kb on + strand, within CCNA_00742 at 800.568 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.629 kb on + strand, within CCNA_00742 at 800.655 kb on + strand, within CCNA_00742 at 800.660 kb on + strand, within CCNA_00742 at 800.663 kb on - strand, within CCNA_00742 at 800.668 kb on - strand, within CCNA_00742 at 800.693 kb on - strand, within CCNA_00742 at 800.702 kb on + strand, within CCNA_00742 at 800.735 kb on - strand at 800.743 kb on + strand at 800.855 kb on + strand at 800.855 kb on + strand at 800.858 kb on - strand at 800.863 kb on - strand at 800.863 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 798,485 + +0.5 798,501 + +1.4 798,508 - +1.3 798,511 + -0.1 798,511 + -0.2 798,519 - +1.1 798,519 - +1.2 799,441 + +1.8 799,441 + -0.9 799,441 + -0.9 799,441 + +1.4 799,449 - +1.0 799,449 - +0.2 799,481 - +1.0 799,516 - CCNA_00741 0.15 +1.1 799,517 - CCNA_00741 0.15 +2.1 799,543 - CCNA_00741 0.21 +1.6 799,552 - CCNA_00741 0.23 +1.2 799,552 - CCNA_00741 0.23 +0.4 799,607 - CCNA_00741 0.36 +1.5 799,626 + CCNA_00741 0.40 +0.1 799,626 + CCNA_00741 0.40 -0.9 799,626 + CCNA_00741 0.40 +1.3 799,626 + CCNA_00741 0.40 +0.5 799,626 + CCNA_00741 0.40 +0.1 799,630 + CCNA_00741 0.41 +0.5 799,632 - CCNA_00741 0.42 +0.7 799,634 - CCNA_00741 0.42 +2.0 799,634 - CCNA_00741 0.42 +0.4 799,634 - CCNA_00741 0.42 +3.4 799,634 - CCNA_00741 0.42 +2.0 799,638 - CCNA_00741 0.43 +0.3 799,660 + CCNA_00741 0.48 +0.4 799,670 - CCNA_00741 0.51 +0.0 799,670 - CCNA_00741 0.51 +1.5 799,670 - CCNA_00741 0.51 +0.9 799,689 - CCNA_00741 0.55 +1.1 799,720 + CCNA_00741 0.62 +0.4 799,720 + CCNA_00741 0.62 +2.7 799,725 + CCNA_00741 0.64 -1.2 799,728 - CCNA_00741 0.64 +1.9 799,728 - CCNA_00741 0.64 +0.8 799,730 + CCNA_00741 0.65 +0.0 799,753 - CCNA_00741 0.70 +1.8 799,772 - CCNA_00741 0.75 -1.3 799,783 + CCNA_00741 0.77 +1.8 799,783 + CCNA_00741 0.77 +0.2 799,808 - CCNA_00741 0.83 +1.5 799,863 + -1.3 799,881 - +0.1 799,885 + +1.4 799,909 + -0.6 799,912 - +0.9 799,914 + +1.1 799,914 + -1.1 799,914 + -2.1 799,914 + +0.0 799,914 + -2.6 799,917 - +1.1 799,917 - +1.1 799,922 - +1.6 799,922 - +1.9 799,922 - +1.5 799,922 - +1.3 799,946 - +1.1 799,979 - +0.4 799,985 + +1.2 799,985 - -0.2 799,993 - +1.8 800,054 + CCNA_00742 0.14 +0.8 800,097 + CCNA_00742 0.19 +0.0 800,193 + CCNA_00742 0.30 +0.2 800,198 + CCNA_00742 0.30 +1.5 800,211 - CCNA_00742 0.32 -0.1 800,211 - CCNA_00742 0.32 +0.7 800,261 - CCNA_00742 0.38 -0.1 800,302 - CCNA_00742 0.42 +0.8 800,317 - CCNA_00742 0.44 +1.1 800,330 - CCNA_00742 0.46 +1.3 800,332 - CCNA_00742 0.46 +1.4 800,352 + CCNA_00742 0.48 +0.7 800,360 - CCNA_00742 0.49 -0.3 800,394 + CCNA_00742 0.53 -0.1 800,402 - CCNA_00742 0.54 +0.0 800,417 - CCNA_00742 0.56 +1.0 800,425 - CCNA_00742 0.57 +0.0 800,438 - CCNA_00742 0.58 +0.5 800,460 - CCNA_00742 0.61 +0.1 800,471 - CCNA_00742 0.62 +0.5 800,473 - CCNA_00742 0.62 +0.7 800,502 + CCNA_00742 0.66 +0.5 800,514 + CCNA_00742 0.67 +0.1 800,520 + CCNA_00742 0.68 +0.1 800,528 - CCNA_00742 0.69 -1.5 800,555 + CCNA_00742 0.72 +0.8 800,555 + CCNA_00742 0.72 +0.2 800,568 - CCNA_00742 0.73 -0.5 800,600 - CCNA_00742 0.77 +0.8 800,600 - CCNA_00742 0.77 -2.7 800,600 - CCNA_00742 0.77 -0.9 800,629 + CCNA_00742 0.80 +0.2 800,655 + CCNA_00742 0.83 +1.5 800,660 + CCNA_00742 0.84 +1.0 800,663 - CCNA_00742 0.84 +1.0 800,668 - CCNA_00742 0.85 +0.7 800,693 - CCNA_00742 0.88 +0.4 800,702 + CCNA_00742 0.89 +1.0 800,735 - +0.9 800,743 + +1.8 800,855 + -0.6 800,855 + +1.5 800,858 - -1.7 800,863 - -0.0 800,863 - -1.5
Or see this region's nucleotide sequence