Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00695 and CCNA_00696 are separated by 80 nucleotides CCNA_00696 and CCNA_00698 are separated by 513 nucleotides
CCNA_00695: CCNA_00695 - metal-dependent hydrolase, at 754,514 to 756,148
_00695
CCNA_00696: CCNA_00696 - O6-methylguanine-DNA methyltransferase, at 756,229 to 756,804
_00696
CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815
_00698
Position (kb) 756
757 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 755.241 kb on - strand, within CCNA_00695 at 755.247 kb on + strand, within CCNA_00695 at 755.247 kb on + strand, within CCNA_00695 at 755.265 kb on - strand, within CCNA_00695 at 755.276 kb on + strand, within CCNA_00695 at 755.279 kb on - strand, within CCNA_00695 at 755.281 kb on + strand, within CCNA_00695 at 755.284 kb on - strand, within CCNA_00695 at 755.306 kb on - strand, within CCNA_00695 at 755.309 kb on + strand, within CCNA_00695 at 755.312 kb on - strand, within CCNA_00695 at 755.312 kb on - strand, within CCNA_00695 at 755.317 kb on - strand, within CCNA_00695 at 755.317 kb on - strand, within CCNA_00695 at 755.340 kb on + strand, within CCNA_00695 at 755.420 kb on + strand, within CCNA_00695 at 755.420 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.454 kb on - strand, within CCNA_00695 at 755.456 kb on + strand, within CCNA_00695 at 755.456 kb on + strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.464 kb on - strand, within CCNA_00695 at 755.466 kb on + strand, within CCNA_00695 at 755.469 kb on - strand, within CCNA_00695 at 755.477 kb on + strand, within CCNA_00695 at 755.479 kb on - strand, within CCNA_00695 at 755.486 kb on + strand, within CCNA_00695 at 755.528 kb on + strand, within CCNA_00695 at 755.537 kb on - strand, within CCNA_00695 at 755.553 kb on + strand, within CCNA_00695 at 755.556 kb on - strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.643 kb on - strand, within CCNA_00695 at 755.643 kb on - strand, within CCNA_00695 at 755.643 kb on - strand, within CCNA_00695 at 755.648 kb on - strand, within CCNA_00695 at 755.652 kb on + strand, within CCNA_00695 at 755.675 kb on + strand, within CCNA_00695 at 755.675 kb on + strand, within CCNA_00695 at 755.683 kb on - strand, within CCNA_00695 at 755.737 kb on + strand, within CCNA_00695 at 755.742 kb on + strand, within CCNA_00695 at 755.757 kb on + strand, within CCNA_00695 at 755.757 kb on + strand, within CCNA_00695 at 755.770 kb on - strand, within CCNA_00695 at 755.773 kb on + strand, within CCNA_00695 at 755.773 kb on + strand, within CCNA_00695 at 755.789 kb on - strand, within CCNA_00695 at 755.799 kb on + strand, within CCNA_00695 at 755.799 kb on + strand, within CCNA_00695 at 755.799 kb on + strand, within CCNA_00695 at 755.799 kb on + strand, within CCNA_00695 at 755.807 kb on - strand, within CCNA_00695 at 755.812 kb on - strand, within CCNA_00695 at 755.812 kb on - strand, within CCNA_00695 at 755.835 kb on + strand, within CCNA_00695 at 755.843 kb on - strand, within CCNA_00695 at 755.851 kb on + strand, within CCNA_00695 at 755.859 kb on - strand, within CCNA_00695 at 755.865 kb on - strand, within CCNA_00695 at 755.872 kb on + strand, within CCNA_00695 at 755.880 kb on - strand, within CCNA_00695 at 755.928 kb on + strand, within CCNA_00695 at 755.938 kb on - strand, within CCNA_00695 at 755.961 kb on + strand, within CCNA_00695 at 755.969 kb on - strand, within CCNA_00695 at 755.969 kb on - strand, within CCNA_00695 at 755.969 kb on - strand, within CCNA_00695 at 756.002 kb on - strand at 756.014 kb on + strand at 756.014 kb on + strand at 756.017 kb on - strand at 756.044 kb on + strand at 756.058 kb on + strand at 756.061 kb on - strand at 756.090 kb on + strand at 756.091 kb on + strand at 756.141 kb on - strand at 756.199 kb on - strand at 756.240 kb on + strand at 756.296 kb on - strand, within CCNA_00696 at 756.308 kb on + strand, within CCNA_00696 at 756.308 kb on + strand, within CCNA_00696 at 756.318 kb on + strand, within CCNA_00696 at 756.323 kb on - strand, within CCNA_00696 at 756.326 kb on - strand, within CCNA_00696 at 756.329 kb on + strand, within CCNA_00696 at 756.337 kb on - strand, within CCNA_00696 at 756.344 kb on + strand, within CCNA_00696 at 756.363 kb on + strand, within CCNA_00696 at 756.371 kb on + strand, within CCNA_00696 at 756.371 kb on - strand, within CCNA_00696 at 756.376 kb on + strand, within CCNA_00696 at 756.384 kb on - strand, within CCNA_00696 at 756.432 kb on + strand, within CCNA_00696 at 756.451 kb on + strand, within CCNA_00696 at 756.456 kb on + strand, within CCNA_00696 at 756.471 kb on + strand, within CCNA_00696 at 756.471 kb on + strand, within CCNA_00696 at 756.491 kb on + strand, within CCNA_00696 at 756.505 kb on - strand, within CCNA_00696 at 756.519 kb on - strand, within CCNA_00696 at 756.522 kb on + strand, within CCNA_00696 at 756.524 kb on - strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.547 kb on + strand, within CCNA_00696 at 756.551 kb on + strand, within CCNA_00696 at 756.571 kb on - strand, within CCNA_00696 at 756.652 kb on - strand, within CCNA_00696 at 756.671 kb on + strand, within CCNA_00696 at 756.700 kb on + strand, within CCNA_00696 at 756.708 kb on - strand, within CCNA_00696 at 756.728 kb on - strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.749 kb on - strand at 756.749 kb on - strand at 756.749 kb on - strand at 756.766 kb on + strand at 756.770 kb on - strand at 756.774 kb on - strand at 756.806 kb on + strand at 756.813 kb on + strand at 756.813 kb on + strand at 756.821 kb on - strand at 756.821 kb on - strand at 756.828 kb on - strand at 756.828 kb on - strand at 756.833 kb on + strand at 756.841 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.874 kb on - strand at 757.023 kb on + strand at 757.023 kb on + strand at 757.025 kb on + strand at 757.052 kb on + strand at 757.052 kb on + strand at 757.060 kb on - strand at 757.071 kb on - strand at 757.091 kb on + strand at 757.092 kb on - strand at 757.148 kb on - strand at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.384 kb on - strand, within CCNA_00698 at 757.403 kb on + strand, within CCNA_00698 at 757.437 kb on - strand, within CCNA_00698 at 757.442 kb on + strand, within CCNA_00698 at 757.449 kb on + strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.476 kb on + strand, within CCNA_00698 at 757.515 kb on - strand, within CCNA_00698 at 757.516 kb on + strand, within CCNA_00698 at 757.524 kb on - strand, within CCNA_00698 at 757.527 kb on + strand, within CCNA_00698 at 757.552 kb on - strand, within CCNA_00698 at 757.566 kb on - strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.579 kb on - strand, within CCNA_00698 at 757.587 kb on - strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.626 kb on + strand, within CCNA_00698 at 757.645 kb on + strand, within CCNA_00698 at 757.653 kb on - strand at 757.663 kb on + strand, within CCNA_00698 at 757.724 kb on + strand, within CCNA_00698 at 757.732 kb on - strand, within CCNA_00698 at 757.736 kb on + strand, within CCNA_00698 at 757.746 kb on + strand, within CCNA_00698 at 757.754 kb on - strand at 757.780 kb on + strand at 757.780 kb on + strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 755,241 - CCNA_00695 0.44 +0.0 755,247 + CCNA_00695 0.45 +1.3 755,247 + CCNA_00695 0.45 +0.5 755,265 - CCNA_00695 0.46 +0.8 755,276 + CCNA_00695 0.47 +0.5 755,279 - CCNA_00695 0.47 +0.9 755,281 + CCNA_00695 0.47 +0.1 755,284 - CCNA_00695 0.47 +1.3 755,306 - CCNA_00695 0.48 +1.5 755,309 + CCNA_00695 0.49 -0.0 755,312 - CCNA_00695 0.49 -0.6 755,312 - CCNA_00695 0.49 +0.0 755,317 - CCNA_00695 0.49 -1.5 755,317 - CCNA_00695 0.49 +0.1 755,340 + CCNA_00695 0.51 -0.3 755,420 + CCNA_00695 0.55 +0.3 755,420 + CCNA_00695 0.55 +2.2 755,451 + CCNA_00695 0.57 -0.4 755,451 + CCNA_00695 0.57 +1.9 755,451 + CCNA_00695 0.57 +0.8 755,451 + CCNA_00695 0.57 -0.2 755,451 + CCNA_00695 0.57 -0.7 755,451 + CCNA_00695 0.57 +0.1 755,451 + CCNA_00695 0.57 +3.2 755,451 + CCNA_00695 0.57 +0.4 755,451 + CCNA_00695 0.57 +1.5 755,451 + CCNA_00695 0.57 +2.9 755,451 + CCNA_00695 0.57 +0.3 755,454 - CCNA_00695 0.57 -0.8 755,456 + CCNA_00695 0.58 +0.4 755,456 + CCNA_00695 0.58 +1.9 755,459 - CCNA_00695 0.58 -1.6 755,459 - CCNA_00695 0.58 -2.4 755,459 - CCNA_00695 0.58 -0.8 755,459 - CCNA_00695 0.58 -0.9 755,459 - CCNA_00695 0.58 +2.2 755,459 - CCNA_00695 0.58 +0.2 755,459 - CCNA_00695 0.58 -0.6 755,459 - CCNA_00695 0.58 +3.9 755,459 - CCNA_00695 0.58 +0.9 755,459 - CCNA_00695 0.58 -0.0 755,464 - CCNA_00695 0.58 +0.8 755,466 + CCNA_00695 0.58 +0.4 755,469 - CCNA_00695 0.58 -0.4 755,477 + CCNA_00695 0.59 -0.3 755,479 - CCNA_00695 0.59 +0.2 755,486 + CCNA_00695 0.59 -2.1 755,528 + CCNA_00695 0.62 -0.9 755,537 - CCNA_00695 0.63 +2.2 755,553 + CCNA_00695 0.64 -0.2 755,556 - CCNA_00695 0.64 +0.0 755,630 + CCNA_00695 0.68 +0.6 755,630 + CCNA_00695 0.68 +0.4 755,630 + CCNA_00695 0.68 -1.1 755,630 + CCNA_00695 0.68 +0.3 755,630 + CCNA_00695 0.68 -0.1 755,630 + CCNA_00695 0.68 -0.4 755,630 + CCNA_00695 0.68 +0.2 755,630 + CCNA_00695 0.68 +1.2 755,638 - CCNA_00695 0.69 +1.1 755,638 - CCNA_00695 0.69 +1.7 755,638 - CCNA_00695 0.69 +0.7 755,638 - CCNA_00695 0.69 +0.9 755,638 - CCNA_00695 0.69 +0.5 755,643 - CCNA_00695 0.69 -0.5 755,643 - CCNA_00695 0.69 +0.2 755,643 - CCNA_00695 0.69 -0.3 755,648 - CCNA_00695 0.69 -1.4 755,652 + CCNA_00695 0.70 +0.8 755,675 + CCNA_00695 0.71 +1.0 755,675 + CCNA_00695 0.71 +0.4 755,683 - CCNA_00695 0.71 +0.1 755,737 + CCNA_00695 0.75 +0.0 755,742 + CCNA_00695 0.75 +0.6 755,757 + CCNA_00695 0.76 +0.3 755,757 + CCNA_00695 0.76 +0.1 755,770 - CCNA_00695 0.77 +1.7 755,773 + CCNA_00695 0.77 +1.5 755,773 + CCNA_00695 0.77 +0.8 755,789 - CCNA_00695 0.78 +0.5 755,799 + CCNA_00695 0.79 -1.0 755,799 + CCNA_00695 0.79 +0.3 755,799 + CCNA_00695 0.79 -0.1 755,799 + CCNA_00695 0.79 -0.0 755,807 - CCNA_00695 0.79 -1.1 755,812 - CCNA_00695 0.79 +0.5 755,812 - CCNA_00695 0.79 +0.6 755,835 + CCNA_00695 0.81 +0.0 755,843 - CCNA_00695 0.81 +0.3 755,851 + CCNA_00695 0.82 +0.3 755,859 - CCNA_00695 0.82 +0.5 755,865 - CCNA_00695 0.83 +1.2 755,872 + CCNA_00695 0.83 +0.0 755,880 - CCNA_00695 0.84 +0.7 755,928 + CCNA_00695 0.86 +1.2 755,938 - CCNA_00695 0.87 +0.5 755,961 + CCNA_00695 0.89 -0.9 755,969 - CCNA_00695 0.89 -0.6 755,969 - CCNA_00695 0.89 +2.5 755,969 - CCNA_00695 0.89 +2.6 756,002 - +0.0 756,014 + +0.8 756,014 + -0.9 756,017 - -0.1 756,044 + -1.0 756,058 + -1.3 756,061 - -0.5 756,090 + +2.1 756,091 + +0.1 756,141 - +1.9 756,199 - +0.1 756,240 + +0.9 756,296 - CCNA_00696 0.12 +1.0 756,308 + CCNA_00696 0.14 -0.1 756,308 + CCNA_00696 0.14 +0.5 756,318 + CCNA_00696 0.15 +1.0 756,323 - CCNA_00696 0.16 +1.3 756,326 - CCNA_00696 0.17 +1.6 756,329 + CCNA_00696 0.17 -0.8 756,337 - CCNA_00696 0.19 +1.9 756,344 + CCNA_00696 0.20 -0.5 756,363 + CCNA_00696 0.23 +0.3 756,371 + CCNA_00696 0.25 +2.1 756,371 - CCNA_00696 0.25 -0.9 756,376 + CCNA_00696 0.26 -0.4 756,384 - CCNA_00696 0.27 -1.5 756,432 + CCNA_00696 0.35 +0.4 756,451 + CCNA_00696 0.39 +0.7 756,456 + CCNA_00696 0.39 +1.2 756,471 + CCNA_00696 0.42 -0.4 756,471 + CCNA_00696 0.42 -0.1 756,491 + CCNA_00696 0.45 +0.4 756,505 - CCNA_00696 0.48 +0.2 756,519 - CCNA_00696 0.50 +1.2 756,522 + CCNA_00696 0.51 -0.4 756,524 - CCNA_00696 0.51 -0.3 756,541 + CCNA_00696 0.54 +1.0 756,541 + CCNA_00696 0.54 +0.1 756,541 + CCNA_00696 0.54 -0.4 756,547 + CCNA_00696 0.55 -0.4 756,551 + CCNA_00696 0.56 +0.7 756,571 - CCNA_00696 0.59 +1.9 756,652 - CCNA_00696 0.73 +0.4 756,671 + CCNA_00696 0.77 +0.0 756,700 + CCNA_00696 0.82 -0.9 756,708 - CCNA_00696 0.83 +0.4 756,728 - CCNA_00696 0.87 -0.7 756,741 + CCNA_00696 0.89 +0.5 756,741 + CCNA_00696 0.89 +0.5 756,741 + CCNA_00696 0.89 +0.1 756,741 + CCNA_00696 0.89 -1.1 756,749 - -1.3 756,749 - +0.3 756,749 - -0.3 756,766 + +1.2 756,770 - +0.4 756,774 - +0.7 756,806 + +0.7 756,813 + +1.7 756,813 + +2.2 756,821 - -1.2 756,821 - +1.0 756,828 - -1.8 756,828 - +1.2 756,833 + +0.0 756,841 - +1.6 756,872 - +2.5 756,872 - +0.8 756,872 - +2.7 756,872 - +2.2 756,872 - +0.8 756,874 - +0.3 757,023 + -2.2 757,023 + +0.0 757,025 + +0.1 757,052 + +0.9 757,052 + +0.8 757,060 - +0.4 757,071 - +1.6 757,091 + +0.1 757,092 - +0.7 757,148 - +1.2 757,376 + CCNA_00698 0.12 -0.3 757,376 + CCNA_00698 0.12 -1.3 757,376 + CCNA_00698 0.12 -0.5 757,376 + CCNA_00698 0.12 +0.2 757,384 - CCNA_00698 0.13 -0.9 757,403 + CCNA_00698 0.17 -0.1 757,437 - CCNA_00698 0.24 +1.5 757,442 + CCNA_00698 0.25 -0.1 757,449 + CCNA_00698 0.26 -0.7 757,467 - CCNA_00698 0.30 -0.6 757,467 - CCNA_00698 0.30 -0.4 757,476 + CCNA_00698 0.32 +0.4 757,515 - CCNA_00698 0.40 -1.7 757,516 + CCNA_00698 0.40 -1.1 757,524 - CCNA_00698 0.41 -1.0 757,527 + CCNA_00698 0.42 -1.4 757,552 - CCNA_00698 0.47 -0.9 757,566 - CCNA_00698 0.50 +0.7 757,571 + CCNA_00698 0.51 +1.7 757,571 + CCNA_00698 0.51 -1.3 757,579 - CCNA_00698 0.52 +1.0 757,587 - CCNA_00698 0.54 +0.2 757,596 + CCNA_00698 0.56 +0.8 757,596 + CCNA_00698 0.56 -0.9 757,626 + CCNA_00698 0.62 +1.0 757,645 + CCNA_00698 0.66 -1.0 757,653 - +2.5 757,663 + CCNA_00698 0.69 -1.3 757,724 + CCNA_00698 0.82 +0.8 757,732 - CCNA_00698 0.83 -0.7 757,736 + CCNA_00698 0.84 +0.1 757,746 + CCNA_00698 0.86 +2.5 757,754 - +3.3 757,780 + -0.4 757,780 + +0.3 757,788 - +1.0 757,788 - +0.2 757,788 - +1.0 757,788 - +0.6 757,788 - -0.8 757,788 - -1.8 757,788 - +0.4 757,788 - -0.1 757,788 - +1.2
Or see this region's nucleotide sequence