Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00541

Experiment: PYE with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00540 and CCNA_03923 are separated by 130 nucleotidesCCNA_03923 and CCNA_00541 are separated by 63 nucleotidesCCNA_00541 and CCNA_00542 overlap by 4 nucleotidesCCNA_00542 and CCNA_00543 are separated by 48 nucleotides CCNA_00540: CCNA_00540 - coproporphyrinogen III oxidase, at 559,904 to 560,776 _00540 CCNA_03923: CCNA_03923 - hypothetical protein, at 560,907 to 560,972 _03923 CCNA_00541: CCNA_00541 - hypothetical protein, at 561,036 to 561,344 _00541 CCNA_00542: CCNA_00542 - hypothetical protein, at 561,341 to 561,664 _00542 CCNA_00543: CCNA_00543 - methyl-accepting chemotaxis protein, at 561,713 to 562,363 _00543 Position (kb) 561 562Strain fitness (log2 ratio) -2 -1 0 1 2 3at 560.771 kb on + strandat 560.771 kb on + strandat 560.779 kb on - strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.792 kb on - strandat 560.845 kb on - strandat 560.851 kb on - strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.864 kb on - strandat 560.864 kb on - strandat 560.867 kb on + strandat 560.875 kb on - strandat 560.877 kb on + strandat 560.900 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.915 kb on + strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.938 kb on - strand, within CCNA_03923at 560.952 kb on + strand, within CCNA_03923at 560.991 kb on + strandat 561.016 kb on - strandat 561.033 kb on + strandat 561.058 kb on - strandat 561.067 kb on + strand, within CCNA_00541at 561.077 kb on + strand, within CCNA_00541at 561.085 kb on - strand, within CCNA_00541at 561.135 kb on - strand, within CCNA_00541at 561.155 kb on - strand, within CCNA_00541at 561.170 kb on - strand, within CCNA_00541at 561.241 kb on + strand, within CCNA_00541at 561.253 kb on + strand, within CCNA_00541at 561.254 kb on - strand, within CCNA_00541at 561.261 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.429 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.447 kb on - strand, within CCNA_00542at 561.448 kb on - strand, within CCNA_00542at 561.472 kb on - strand, within CCNA_00542at 561.486 kb on - strand, within CCNA_00542at 561.537 kb on + strand, within CCNA_00542at 561.569 kb on + strand, within CCNA_00542at 561.594 kb on + strand, within CCNA_00542at 561.665 kb on + strandat 561.665 kb on + strandat 561.668 kb on - strandat 561.672 kb on + strandat 561.672 kb on + strandat 561.672 kb on + strandat 561.673 kb on - strandat 561.680 kb on - strandat 561.680 kb on - strandat 561.686 kb on - strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.719 kb on - strandat 561.719 kb on - strandat 561.797 kb on - strand, within CCNA_00543at 561.908 kb on + strand, within CCNA_00543at 561.925 kb on - strand, within CCNA_00543at 561.966 kb on + strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.997 kb on - strand, within CCNA_00543at 562.039 kb on + strand, within CCNA_00543at 562.129 kb on - strandat 562.153 kb on - strand, within CCNA_00543at 562.158 kb on - strand, within CCNA_00543at 562.229 kb on - strand, within CCNA_00543

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM
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560,771 + -1.8
560,771 + -0.8
560,779 - -0.2
560,784 + +0.9
560,784 + -1.5
560,792 - +1.6
560,845 - +1.5
560,851 - -0.2
560,856 + -0.4
560,856 + +1.5
560,856 + +0.7
560,856 + -1.3
560,856 + -0.7
560,864 - -1.5
560,864 - -0.7
560,867 + +0.1
560,875 - -1.0
560,877 + +1.1
560,900 + -0.3
560,910 + -1.5
560,910 + -0.1
560,910 + +2.2
560,910 + -1.4
560,910 + -0.1
560,910 + +0.5
560,910 + +0.2
560,910 + -0.2
560,910 + +0.1
560,910 + -0.7
560,910 + -0.2
560,910 + +3.2
560,915 + CCNA_03923 0.12 +0.4
560,918 - CCNA_03923 0.17 -1.5
560,918 - CCNA_03923 0.17 -0.5
560,918 - CCNA_03923 0.17 +1.1
560,918 - CCNA_03923 0.17 +1.1
560,918 - CCNA_03923 0.17 -1.2
560,918 - CCNA_03923 0.17 +0.9
560,925 + CCNA_03923 0.27 -0.0
560,938 - CCNA_03923 0.47 +0.1
560,952 + CCNA_03923 0.68 -1.1
560,991 + +1.4
561,016 - +0.5
561,033 + +0.6
561,058 - +0.5
561,067 + CCNA_00541 0.10 +0.4
561,077 + CCNA_00541 0.13 -2.2
561,085 - CCNA_00541 0.16 +0.9
561,135 - CCNA_00541 0.32 +2.9
561,155 - CCNA_00541 0.39 -1.0
561,170 - CCNA_00541 0.43 +0.6
561,241 + CCNA_00541 0.66 +0.8
561,253 + CCNA_00541 0.70 -1.7
561,254 - CCNA_00541 0.71 -1.7
561,261 - CCNA_00541 0.73 +0.4
561,304 - CCNA_00541 0.87 +1.1
561,304 - CCNA_00541 0.87 +0.2
561,304 - CCNA_00541 0.87 -0.3
561,429 - CCNA_00542 0.27 +2.5
561,439 - CCNA_00542 0.30 +1.7
561,439 - CCNA_00542 0.30 +1.0
561,439 - CCNA_00542 0.30 +0.6
561,439 - CCNA_00542 0.30 +3.0
561,447 - CCNA_00542 0.33 -1.7
561,448 - CCNA_00542 0.33 +0.3
561,472 - CCNA_00542 0.40 +0.5
561,486 - CCNA_00542 0.45 +0.4
561,537 + CCNA_00542 0.60 +1.4
561,569 + CCNA_00542 0.70 -0.7
561,594 + CCNA_00542 0.78 +0.1
561,665 + +0.5
561,665 + -0.8
561,668 - +1.5
561,672 + -0.7
561,672 + -1.8
561,672 + -0.3
561,673 - -0.3
561,680 - +1.5
561,680 - +0.4
561,686 - +0.7
561,711 + -1.3
561,711 + -0.6
561,711 + -0.8
561,719 - +0.5
561,719 - +1.7
561,797 - CCNA_00543 0.13 -0.6
561,908 + CCNA_00543 0.30 +1.5
561,925 - CCNA_00543 0.33 -0.2
561,966 + CCNA_00543 0.39 +2.7
561,974 - CCNA_00543 0.40 +0.3
561,974 - CCNA_00543 0.40 +0.5
561,974 - CCNA_00543 0.40 +0.1
561,974 - CCNA_00543 0.40 +1.7
561,974 - CCNA_00543 0.40 +0.8
561,974 - CCNA_00543 0.40 -0.9
561,997 - CCNA_00543 0.44 -0.9
562,039 + CCNA_00543 0.50 -0.1
562,129 - +2.3
562,153 - CCNA_00543 0.68 -0.3
562,158 - CCNA_00543 0.68 +0.2
562,229 - CCNA_00543 0.79 -0.2

Or see this region's nucleotide sequence