Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00540

Experiment: PYE with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00539 and CCNA_00540 are separated by 194 nucleotidesCCNA_00540 and CCNA_03923 are separated by 130 nucleotidesCCNA_03923 and CCNA_00541 are separated by 63 nucleotidesCCNA_00541 and CCNA_00542 overlap by 4 nucleotidesCCNA_00542 and CCNA_00543 are separated by 48 nucleotides CCNA_00539: CCNA_00539 - salicylate hydroxylase, at 558,249 to 559,709 _00539 CCNA_00540: CCNA_00540 - coproporphyrinogen III oxidase, at 559,904 to 560,776 _00540 CCNA_03923: CCNA_03923 - hypothetical protein, at 560,907 to 560,972 _03923 CCNA_00541: CCNA_00541 - hypothetical protein, at 561,036 to 561,344 _00541 CCNA_00542: CCNA_00542 - hypothetical protein, at 561,341 to 561,664 _00542 CCNA_00543: CCNA_00543 - methyl-accepting chemotaxis protein, at 561,713 to 562,363 _00543 Position (kb) 559 560 561Strain fitness (log2 ratio) -2 -1 0 1 2 3at 558.951 kb on + strand, within CCNA_00539at 558.959 kb on - strand, within CCNA_00539at 558.959 kb on - strand, within CCNA_00539at 558.967 kb on - strand, within CCNA_00539at 558.983 kb on + strand, within CCNA_00539at 559.009 kb on + strand, within CCNA_00539at 559.017 kb on - strand, within CCNA_00539at 559.022 kb on - strand, within CCNA_00539at 559.023 kb on + strand, within CCNA_00539at 559.030 kb on + strand, within CCNA_00539at 559.038 kb on - strand, within CCNA_00539at 559.050 kb on + strand, within CCNA_00539at 559.080 kb on - strand, within CCNA_00539at 559.081 kb on + strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.109 kb on - strand, within CCNA_00539at 559.169 kb on + strand, within CCNA_00539at 559.178 kb on - strand, within CCNA_00539at 559.201 kb on - strand, within CCNA_00539at 559.216 kb on + strand, within CCNA_00539at 559.236 kb on - strand, within CCNA_00539at 559.247 kb on - strand, within CCNA_00539at 559.247 kb on - strand, within CCNA_00539at 559.248 kb on - strand, within CCNA_00539at 559.252 kb on + strand, within CCNA_00539at 559.268 kb on + strand, within CCNA_00539at 559.268 kb on + strand, within CCNA_00539at 559.273 kb on + strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.281 kb on - strand, within CCNA_00539at 559.281 kb on - strand, within CCNA_00539at 559.286 kb on - strand, within CCNA_00539at 559.286 kb on - strand, within CCNA_00539at 559.286 kb on - strand, within CCNA_00539at 559.286 kb on - strand, within CCNA_00539at 559.308 kb on - strand, within CCNA_00539at 559.314 kb on + strand, within CCNA_00539at 559.314 kb on + strand, within CCNA_00539at 559.314 kb on + strand, within CCNA_00539at 559.322 kb on - strand, within CCNA_00539at 559.328 kb on - strand, within CCNA_00539at 559.341 kb on + strand, within CCNA_00539at 559.341 kb on + strand, within CCNA_00539at 559.381 kb on - strand, within CCNA_00539at 559.381 kb on - strand, within CCNA_00539at 559.393 kb on + strand, within CCNA_00539at 559.412 kb on + strand, within CCNA_00539at 559.412 kb on + strand, within CCNA_00539at 559.422 kb on + strand, within CCNA_00539at 559.425 kb on - strand, within CCNA_00539at 559.448 kb on - strand, within CCNA_00539at 559.463 kb on + strand, within CCNA_00539at 559.496 kb on + strand, within CCNA_00539at 559.522 kb on - strand, within CCNA_00539at 559.550 kb on + strand, within CCNA_00539at 559.552 kb on + strand, within CCNA_00539at 559.559 kb on + strand, within CCNA_00539at 559.585 kb on + strandat 559.593 kb on + strandat 559.606 kb on - strandat 559.610 kb on - strandat 559.634 kb on - strandat 559.634 kb on - strandat 559.634 kb on - strandat 559.671 kb on + strandat 559.671 kb on + strandat 559.676 kb on + strandat 559.677 kb on + strandat 559.677 kb on + strandat 559.679 kb on - strandat 559.680 kb on - strandat 559.684 kb on - strandat 559.685 kb on - strandat 559.685 kb on - strandat 559.761 kb on + strandat 559.761 kb on + strandat 559.761 kb on + strandat 559.769 kb on - strandat 559.769 kb on - strandat 559.771 kb on + strandat 559.779 kb on + strandat 559.787 kb on - strandat 559.792 kb on + strandat 559.800 kb on - strandat 559.807 kb on + strandat 559.880 kb on - strandat 559.885 kb on + strandat 559.908 kb on + strandat 560.771 kb on + strandat 560.771 kb on + strandat 560.779 kb on - strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.792 kb on - strandat 560.845 kb on - strandat 560.851 kb on - strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.856 kb on + strandat 560.864 kb on - strandat 560.864 kb on - strandat 560.867 kb on + strandat 560.875 kb on - strandat 560.877 kb on + strandat 560.900 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.915 kb on + strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.938 kb on - strand, within CCNA_03923at 560.952 kb on + strand, within CCNA_03923at 560.991 kb on + strandat 561.016 kb on - strandat 561.033 kb on + strandat 561.058 kb on - strandat 561.067 kb on + strand, within CCNA_00541at 561.077 kb on + strand, within CCNA_00541at 561.085 kb on - strand, within CCNA_00541at 561.135 kb on - strand, within CCNA_00541at 561.155 kb on - strand, within CCNA_00541at 561.170 kb on - strand, within CCNA_00541at 561.241 kb on + strand, within CCNA_00541at 561.253 kb on + strand, within CCNA_00541at 561.254 kb on - strand, within CCNA_00541at 561.261 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.304 kb on - strand, within CCNA_00541at 561.429 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.447 kb on - strand, within CCNA_00542at 561.448 kb on - strand, within CCNA_00542at 561.472 kb on - strand, within CCNA_00542at 561.486 kb on - strand, within CCNA_00542at 561.537 kb on + strand, within CCNA_00542at 561.569 kb on + strand, within CCNA_00542at 561.594 kb on + strand, within CCNA_00542at 561.665 kb on + strandat 561.665 kb on + strandat 561.668 kb on - strandat 561.672 kb on + strandat 561.672 kb on + strandat 561.672 kb on + strandat 561.673 kb on - strandat 561.680 kb on - strandat 561.680 kb on - strandat 561.686 kb on - strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.719 kb on - strandat 561.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM
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558,951 + CCNA_00539 0.48 -0.0
558,959 - CCNA_00539 0.49 -0.9
558,959 - CCNA_00539 0.49 -0.4
558,967 - CCNA_00539 0.49 +1.3
558,983 + CCNA_00539 0.50 -0.8
559,009 + CCNA_00539 0.52 -1.1
559,017 - CCNA_00539 0.53 +0.1
559,022 - CCNA_00539 0.53 -1.2
559,023 + CCNA_00539 0.53 +0.7
559,030 + CCNA_00539 0.53 -0.6
559,038 - CCNA_00539 0.54 +2.2
559,050 + CCNA_00539 0.55 +0.7
559,080 - CCNA_00539 0.57 +1.4
559,081 + CCNA_00539 0.57 +0.4
559,089 - CCNA_00539 0.57 +0.9
559,089 - CCNA_00539 0.57 -0.0
559,089 - CCNA_00539 0.57 -0.6
559,109 - CCNA_00539 0.59 -1.2
559,169 + CCNA_00539 0.63 -0.3
559,178 - CCNA_00539 0.64 -0.8
559,201 - CCNA_00539 0.65 +0.4
559,216 + CCNA_00539 0.66 +3.2
559,236 - CCNA_00539 0.68 -1.8
559,247 - CCNA_00539 0.68 +1.2
559,247 - CCNA_00539 0.68 +0.8
559,248 - CCNA_00539 0.68 -0.4
559,252 + CCNA_00539 0.69 -0.2
559,268 + CCNA_00539 0.70 -0.4
559,268 + CCNA_00539 0.70 +0.3
559,273 + CCNA_00539 0.70 +0.7
559,276 - CCNA_00539 0.70 +1.5
559,276 - CCNA_00539 0.70 +1.8
559,276 - CCNA_00539 0.70 +1.9
559,276 - CCNA_00539 0.70 +2.2
559,276 - CCNA_00539 0.70 +2.0
559,278 + CCNA_00539 0.70 +2.2
559,278 + CCNA_00539 0.70 +1.1
559,278 + CCNA_00539 0.70 +0.8
559,278 + CCNA_00539 0.70 -1.6
559,278 + CCNA_00539 0.70 -1.7
559,278 + CCNA_00539 0.70 -0.2
559,281 - CCNA_00539 0.71 +0.2
559,281 - CCNA_00539 0.71 -0.7
559,286 - CCNA_00539 0.71 -0.2
559,286 - CCNA_00539 0.71 +1.4
559,286 - CCNA_00539 0.71 -0.6
559,286 - CCNA_00539 0.71 +3.2
559,308 - CCNA_00539 0.72 +1.4
559,314 + CCNA_00539 0.73 -1.9
559,314 + CCNA_00539 0.73 +0.0
559,314 + CCNA_00539 0.73 +2.2
559,322 - CCNA_00539 0.73 +1.2
559,328 - CCNA_00539 0.74 -0.1
559,341 + CCNA_00539 0.75 -0.2
559,341 + CCNA_00539 0.75 +1.7
559,381 - CCNA_00539 0.77 -1.7
559,381 - CCNA_00539 0.77 -0.0
559,393 + CCNA_00539 0.78 +0.7
559,412 + CCNA_00539 0.80 +1.2
559,412 + CCNA_00539 0.80 -0.9
559,422 + CCNA_00539 0.80 -0.3
559,425 - CCNA_00539 0.80 +1.0
559,448 - CCNA_00539 0.82 +0.3
559,463 + CCNA_00539 0.83 +0.6
559,496 + CCNA_00539 0.85 +0.4
559,522 - CCNA_00539 0.87 -0.5
559,550 + CCNA_00539 0.89 -0.6
559,552 + CCNA_00539 0.89 +0.2
559,559 + CCNA_00539 0.90 +1.1
559,585 + +0.2
559,593 + +0.7
559,606 - +1.1
559,610 - +0.4
559,634 - +0.0
559,634 - -0.2
559,634 - +1.1
559,671 + -0.2
559,671 + +0.0
559,676 + -0.4
559,677 + -0.1
559,677 + -0.7
559,679 - -0.6
559,680 - -1.4
559,684 - -0.0
559,685 - -1.9
559,685 - +0.9
559,761 + -0.8
559,761 + +0.7
559,761 + +0.8
559,769 - -0.3
559,769 - +0.3
559,771 + -0.0
559,779 + +0.5
559,787 - -0.8
559,792 + +1.5
559,800 - -0.9
559,807 + +0.8
559,880 - +0.7
559,885 + -1.5
559,908 + -0.4
560,771 + -1.8
560,771 + -0.8
560,779 - -0.2
560,784 + +0.9
560,784 + -1.5
560,792 - +1.6
560,845 - +1.5
560,851 - -0.2
560,856 + -0.4
560,856 + +1.5
560,856 + +0.7
560,856 + -1.3
560,856 + -0.7
560,864 - -1.5
560,864 - -0.7
560,867 + +0.1
560,875 - -1.0
560,877 + +1.1
560,900 + -0.3
560,910 + -1.5
560,910 + -0.1
560,910 + +2.2
560,910 + -1.4
560,910 + -0.1
560,910 + +0.5
560,910 + +0.2
560,910 + -0.2
560,910 + +0.1
560,910 + -0.7
560,910 + -0.2
560,910 + +3.2
560,915 + CCNA_03923 0.12 +0.4
560,918 - CCNA_03923 0.17 -1.5
560,918 - CCNA_03923 0.17 -0.5
560,918 - CCNA_03923 0.17 +1.1
560,918 - CCNA_03923 0.17 +1.1
560,918 - CCNA_03923 0.17 -1.2
560,918 - CCNA_03923 0.17 +0.9
560,925 + CCNA_03923 0.27 -0.0
560,938 - CCNA_03923 0.47 +0.1
560,952 + CCNA_03923 0.68 -1.1
560,991 + +1.4
561,016 - +0.5
561,033 + +0.6
561,058 - +0.5
561,067 + CCNA_00541 0.10 +0.4
561,077 + CCNA_00541 0.13 -2.2
561,085 - CCNA_00541 0.16 +0.9
561,135 - CCNA_00541 0.32 +2.9
561,155 - CCNA_00541 0.39 -1.0
561,170 - CCNA_00541 0.43 +0.6
561,241 + CCNA_00541 0.66 +0.8
561,253 + CCNA_00541 0.70 -1.7
561,254 - CCNA_00541 0.71 -1.7
561,261 - CCNA_00541 0.73 +0.4
561,304 - CCNA_00541 0.87 +1.1
561,304 - CCNA_00541 0.87 +0.2
561,304 - CCNA_00541 0.87 -0.3
561,429 - CCNA_00542 0.27 +2.5
561,439 - CCNA_00542 0.30 +1.7
561,439 - CCNA_00542 0.30 +1.0
561,439 - CCNA_00542 0.30 +0.6
561,439 - CCNA_00542 0.30 +3.0
561,447 - CCNA_00542 0.33 -1.7
561,448 - CCNA_00542 0.33 +0.3
561,472 - CCNA_00542 0.40 +0.5
561,486 - CCNA_00542 0.45 +0.4
561,537 + CCNA_00542 0.60 +1.4
561,569 + CCNA_00542 0.70 -0.7
561,594 + CCNA_00542 0.78 +0.1
561,665 + +0.5
561,665 + -0.8
561,668 - +1.5
561,672 + -0.7
561,672 + -1.8
561,672 + -0.3
561,673 - -0.3
561,680 - +1.5
561,680 - +0.4
561,686 - +0.7
561,711 + -1.3
561,711 + -0.6
561,711 + -0.8
561,719 - +0.5
561,719 - +1.7

Or see this region's nucleotide sequence