Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00268 and CCNA_00269 are separated by 145 nucleotides CCNA_00269 and CCNA_00270 are separated by 126 nucleotides CCNA_00270 and CCNA_00271 are separated by 109 nucleotides CCNA_00271 and CCNA_00272 are separated by 53 nucleotides
CCNA_00268: CCNA_00268 - DNA polymerase III subunit gamma/tau, at 282,130 to 283,956
_00268
CCNA_00269: CCNA_00269 - YbaB/EbfC-family DNA-binding protein, at 284,102 to 284,431
_00269
CCNA_00270: CCNA_00270 - Recombination protein recR, at 284,558 to 285,160
_00270
CCNA_00271: CCNA_00271 - hypothetical protein, at 285,270 to 285,422
_00271
CCNA_00272: CCNA_00272 - RmuC family protein, at 285,476 to 286,765
_00272
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 283.924 kb on + strand at 283.979 kb on - strand at 283.988 kb on + strand at 283.988 kb on + strand at 283.989 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 284.032 kb on + strand at 284.050 kb on + strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.059 kb on - strand at 284.108 kb on - strand at 284.121 kb on + strand at 284.122 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.140 kb on - strand, within CCNA_00269 at 284.182 kb on + strand, within CCNA_00269 at 284.182 kb on + strand, within CCNA_00269 at 284.185 kb on - strand, within CCNA_00269 at 284.220 kb on + strand, within CCNA_00269 at 284.220 kb on + strand, within CCNA_00269 at 284.228 kb on + strand, within CCNA_00269 at 284.228 kb on - strand, within CCNA_00269 at 284.238 kb on + strand, within CCNA_00269 at 284.239 kb on + strand, within CCNA_00269 at 284.240 kb on + strand, within CCNA_00269 at 284.260 kb on + strand, within CCNA_00269 at 284.290 kb on + strand, within CCNA_00269 at 284.291 kb on + strand, within CCNA_00269 at 284.309 kb on - strand, within CCNA_00269 at 284.311 kb on + strand, within CCNA_00269 at 284.314 kb on - strand, within CCNA_00269 at 284.319 kb on - strand, within CCNA_00269 at 284.338 kb on + strand, within CCNA_00269 at 284.349 kb on + strand, within CCNA_00269 at 284.359 kb on + strand, within CCNA_00269 at 284.359 kb on + strand, within CCNA_00269 at 284.377 kb on - strand, within CCNA_00269 at 284.425 kb on + strand at 284.448 kb on + strand at 284.462 kb on - strand at 284.462 kb on - strand at 284.464 kb on + strand at 284.464 kb on + strand at 284.464 kb on + strand at 284.465 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.472 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.482 kb on + strand at 284.482 kb on + strand at 284.485 kb on - strand at 284.490 kb on - strand at 284.505 kb on + strand at 284.505 kb on + strand at 284.505 kb on + strand at 284.513 kb on - strand at 284.513 kb on - strand at 284.514 kb on - strand at 284.524 kb on - strand at 284.538 kb on + strand at 284.554 kb on + strand at 284.569 kb on + strand at 284.569 kb on + strand at 284.613 kb on - strand at 284.648 kb on + strand, within CCNA_00270 at 284.648 kb on + strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.695 kb on - strand, within CCNA_00270 at 284.716 kb on + strand, within CCNA_00270 at 284.716 kb on + strand, within CCNA_00270 at 284.724 kb on - strand, within CCNA_00270 at 284.724 kb on - strand, within CCNA_00270 at 284.806 kb on + strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.842 kb on - strand, within CCNA_00270 at 284.842 kb on - strand, within CCNA_00270 at 284.846 kb on - strand, within CCNA_00270 at 284.846 kb on - strand, within CCNA_00270 at 284.884 kb on + strand, within CCNA_00270 at 284.905 kb on + strand, within CCNA_00270 at 284.910 kb on + strand, within CCNA_00270 at 285.002 kb on + strand, within CCNA_00270 at 285.020 kb on + strand, within CCNA_00270 at 285.044 kb on + strand, within CCNA_00270 at 285.044 kb on + strand, within CCNA_00270 at 285.051 kb on - strand, within CCNA_00270 at 285.089 kb on - strand, within CCNA_00270 at 285.241 kb on + strand at 285.248 kb on + strand at 285.249 kb on - strand at 285.282 kb on + strand at 285.285 kb on - strand at 285.326 kb on - strand, within CCNA_00271 at 285.349 kb on - strand, within CCNA_00271 at 285.354 kb on + strand, within CCNA_00271 at 285.405 kb on + strand, within CCNA_00271 at 285.447 kb on - strand at 285.464 kb on - strand at 285.542 kb on - strand at 285.565 kb on - strand at 285.577 kb on + strand at 285.578 kb on + strand at 285.584 kb on + strand at 285.585 kb on - strand at 285.589 kb on + strand at 285.590 kb on + strand at 285.592 kb on - strand at 285.609 kb on + strand, within CCNA_00272 at 285.613 kb on + strand, within CCNA_00272 at 285.616 kb on - strand, within CCNA_00272 at 285.655 kb on - strand, within CCNA_00272 at 285.673 kb on + strand, within CCNA_00272 at 285.673 kb on + strand, within CCNA_00272 at 285.673 kb on + strand, within CCNA_00272 at 285.673 kb on + strand, within CCNA_00272 at 285.673 kb on + strand, within CCNA_00272 at 285.673 kb on + strand, within CCNA_00272 at 285.673 kb on + strand, within CCNA_00272 at 285.676 kb on - strand, within CCNA_00272 at 285.679 kb on + strand, within CCNA_00272 at 285.681 kb on - strand, within CCNA_00272 at 285.681 kb on - strand, within CCNA_00272 at 285.681 kb on - strand, within CCNA_00272 at 285.681 kb on - strand, within CCNA_00272 at 285.711 kb on - strand, within CCNA_00272 at 285.729 kb on - strand, within CCNA_00272 at 285.783 kb on - strand, within CCNA_00272 at 285.783 kb on - strand, within CCNA_00272 at 285.787 kb on + strand, within CCNA_00272 at 285.787 kb on + strand, within CCNA_00272 at 285.795 kb on - strand, within CCNA_00272 at 285.795 kb on - strand, within CCNA_00272 at 285.795 kb on - strand, within CCNA_00272 at 285.795 kb on - strand, within CCNA_00272 at 285.811 kb on + strand, within CCNA_00272 at 285.829 kb on + strand, within CCNA_00272 at 285.837 kb on - strand, within CCNA_00272 at 285.847 kb on + strand, within CCNA_00272 at 285.855 kb on - strand, within CCNA_00272 at 285.883 kb on + strand, within CCNA_00272 at 285.893 kb on + strand, within CCNA_00272 at 285.935 kb on - strand, within CCNA_00272 at 286.029 kb on - strand, within CCNA_00272 at 286.048 kb on + strand, within CCNA_00272 at 286.048 kb on + strand, within CCNA_00272 at 286.048 kb on + strand, within CCNA_00272 at 286.100 kb on - strand, within CCNA_00272
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 283,924 + +0.2 283,979 - -0.9 283,988 + +1.7 283,988 + +1.5 283,989 - -0.9 283,996 - -0.2 283,996 - -0.1 283,996 - -1.0 283,996 - -1.4 283,996 - +1.1 283,996 - +2.1 283,996 - +2.4 283,996 - -1.3 284,032 + +0.8 284,050 + +0.8 284,058 - +0.3 284,058 - -0.4 284,058 - -0.8 284,058 - +0.1 284,058 - -0.2 284,058 - -1.2 284,059 - +0.4 284,108 - -2.3 284,121 + -0.6 284,122 + -0.6 284,131 + -0.4 284,131 + +2.3 284,131 + -1.2 284,131 + -1.0 284,131 + +0.1 284,131 + +0.4 284,139 - CCNA_00269 0.11 +1.3 284,139 - CCNA_00269 0.11 +1.6 284,139 - +1.7 284,139 - CCNA_00269 0.11 +1.1 284,139 - CCNA_00269 0.11 +0.9 284,139 - CCNA_00269 0.11 +1.1 284,140 - CCNA_00269 0.12 +1.6 284,182 + CCNA_00269 0.24 -0.6 284,182 + CCNA_00269 0.24 -0.7 284,185 - CCNA_00269 0.25 -1.8 284,220 + CCNA_00269 0.36 -0.8 284,220 + CCNA_00269 0.36 +0.4 284,228 + CCNA_00269 0.38 +0.7 284,228 - CCNA_00269 0.38 +0.4 284,238 + CCNA_00269 0.41 -0.1 284,239 + CCNA_00269 0.42 +0.7 284,240 + CCNA_00269 0.42 +1.0 284,260 + CCNA_00269 0.48 +0.6 284,290 + CCNA_00269 0.57 +0.2 284,291 + CCNA_00269 0.57 +0.6 284,309 - CCNA_00269 0.63 -0.8 284,311 + CCNA_00269 0.63 -0.3 284,314 - CCNA_00269 0.64 +0.5 284,319 - CCNA_00269 0.66 -0.0 284,338 + CCNA_00269 0.72 -1.7 284,349 + CCNA_00269 0.75 +0.3 284,359 + CCNA_00269 0.78 +1.4 284,359 + CCNA_00269 0.78 -0.2 284,377 - CCNA_00269 0.83 +1.4 284,425 + +0.3 284,448 + +0.9 284,462 - -1.1 284,462 - -0.1 284,464 + +0.9 284,464 + +0.7 284,464 + +6.7 284,465 + +0.3 284,470 + -0.3 284,470 + +0.7 284,470 + +0.0 284,470 + -0.6 284,470 + +0.4 284,470 + -1.8 284,472 - +1.7 284,478 - +1.1 284,478 - +0.9 284,478 - +0.1 284,478 - +0.9 284,478 - +0.9 284,482 + +0.5 284,482 + +0.5 284,485 - -0.1 284,490 - -1.2 284,505 + +0.5 284,505 + +0.2 284,505 + -0.8 284,513 - -2.4 284,513 - -0.6 284,514 - +0.5 284,524 - -0.1 284,538 + +1.1 284,554 + -0.4 284,569 + +0.1 284,569 + -0.1 284,613 - +2.1 284,648 + CCNA_00270 0.15 +0.9 284,648 + CCNA_00270 0.15 -0.1 284,656 - CCNA_00270 0.16 -0.3 284,656 - CCNA_00270 0.16 -0.5 284,656 - CCNA_00270 0.16 +1.4 284,656 - CCNA_00270 0.16 +0.0 284,695 - CCNA_00270 0.23 +0.5 284,716 + CCNA_00270 0.26 +1.2 284,716 + CCNA_00270 0.26 +0.1 284,724 - CCNA_00270 0.28 -0.5 284,724 - CCNA_00270 0.28 +2.3 284,806 + CCNA_00270 0.41 -0.1 284,841 - CCNA_00270 0.47 -0.0 284,841 - CCNA_00270 0.47 +0.4 284,841 - CCNA_00270 0.47 -3.1 284,842 - CCNA_00270 0.47 +0.3 284,842 - CCNA_00270 0.47 -2.0 284,846 - CCNA_00270 0.48 -1.3 284,846 - CCNA_00270 0.48 -0.3 284,884 + CCNA_00270 0.54 -0.3 284,905 + CCNA_00270 0.58 +0.2 284,910 + CCNA_00270 0.58 +1.3 285,002 + CCNA_00270 0.74 +0.2 285,020 + CCNA_00270 0.77 +1.1 285,044 + CCNA_00270 0.81 -0.9 285,044 + CCNA_00270 0.81 +1.8 285,051 - CCNA_00270 0.82 -2.3 285,089 - CCNA_00270 0.88 -0.6 285,241 + +0.1 285,248 + +0.4 285,249 - -0.7 285,282 + -0.6 285,285 - -1.8 285,326 - CCNA_00271 0.37 -2.0 285,349 - CCNA_00271 0.52 +1.6 285,354 + CCNA_00271 0.55 +1.7 285,405 + CCNA_00271 0.88 -0.4 285,447 - -1.0 285,464 - -0.6 285,542 - -0.4 285,565 - -1.0 285,577 + -0.7 285,578 + +0.8 285,584 + -1.0 285,585 - -1.5 285,589 + -0.4 285,590 + -1.9 285,592 - -1.7 285,609 + CCNA_00272 0.10 -0.5 285,613 + CCNA_00272 0.11 +1.2 285,616 - CCNA_00272 0.11 -1.4 285,655 - CCNA_00272 0.14 -0.4 285,673 + CCNA_00272 0.15 +0.4 285,673 + CCNA_00272 0.15 -0.1 285,673 + CCNA_00272 0.15 -1.7 285,673 + CCNA_00272 0.15 +0.4 285,673 + CCNA_00272 0.15 -0.9 285,673 + CCNA_00272 0.15 -1.1 285,673 + CCNA_00272 0.15 +1.4 285,676 - CCNA_00272 0.16 -0.7 285,679 + CCNA_00272 0.16 -0.5 285,681 - CCNA_00272 0.16 -1.1 285,681 - CCNA_00272 0.16 -0.2 285,681 - CCNA_00272 0.16 -0.2 285,681 - CCNA_00272 0.16 -2.0 285,711 - CCNA_00272 0.18 -1.9 285,729 - CCNA_00272 0.20 -0.6 285,783 - CCNA_00272 0.24 -0.0 285,783 - CCNA_00272 0.24 -1.1 285,787 + CCNA_00272 0.24 -0.4 285,787 + CCNA_00272 0.24 -0.4 285,795 - CCNA_00272 0.25 +1.2 285,795 - CCNA_00272 0.25 -1.3 285,795 - CCNA_00272 0.25 -1.0 285,795 - CCNA_00272 0.25 -0.3 285,811 + CCNA_00272 0.26 +1.1 285,829 + CCNA_00272 0.27 -0.4 285,837 - CCNA_00272 0.28 -1.7 285,847 + CCNA_00272 0.29 +0.3 285,855 - CCNA_00272 0.29 -0.7 285,883 + CCNA_00272 0.32 -0.2 285,893 + CCNA_00272 0.32 +0.3 285,935 - CCNA_00272 0.36 -0.0 286,029 - CCNA_00272 0.43 +0.1 286,048 + CCNA_00272 0.44 -1.2 286,048 + CCNA_00272 0.44 +1.5 286,048 + CCNA_00272 0.44 -1.3 286,100 - CCNA_00272 0.48 -0.7
Or see this region's nucleotide sequence