Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00267

Experiment: PYE with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00266 and CCNA_00267 are separated by 93 nucleotidesCCNA_00267 and CCNA_00268 are separated by 257 nucleotides CCNA_00266: CCNA_00266 - 3-ketoacyl-CoA thiolase, at 279,599 to 280,837 _00266 CCNA_00267: CCNA_00267 - MutT-like protein, at 280,931 to 281,872 _00267 CCNA_00268: CCNA_00268 - DNA polymerase III subunit gamma/tau, at 282,130 to 283,956 _00268 Position (kb) 280 281 282Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 279.941 kb on + strand, within CCNA_00266at 279.975 kb on - strand, within CCNA_00266at 279.983 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 279.993 kb on - strand, within CCNA_00266at 280.001 kb on + strand, within CCNA_00266at 280.004 kb on - strand, within CCNA_00266at 280.033 kb on + strand, within CCNA_00266at 280.069 kb on - strand, within CCNA_00266at 280.080 kb on + strand, within CCNA_00266at 280.080 kb on + strand, within CCNA_00266at 280.088 kb on - strand, within CCNA_00266at 280.110 kb on - strand, within CCNA_00266at 280.111 kb on - strand, within CCNA_00266at 280.118 kb on - strand, within CCNA_00266at 280.169 kb on + strand, within CCNA_00266at 280.177 kb on - strand, within CCNA_00266at 280.177 kb on - strand, within CCNA_00266at 280.188 kb on + strand, within CCNA_00266at 280.188 kb on + strand, within CCNA_00266at 280.214 kb on + strand, within CCNA_00266at 280.214 kb on + strand, within CCNA_00266at 280.222 kb on - strand, within CCNA_00266at 280.243 kb on + strand, within CCNA_00266at 280.249 kb on + strand, within CCNA_00266at 280.296 kb on - strand, within CCNA_00266at 280.337 kb on + strand, within CCNA_00266at 280.345 kb on + strand, within CCNA_00266at 280.345 kb on - strand, within CCNA_00266at 280.345 kb on - strand, within CCNA_00266at 280.385 kb on - strand, within CCNA_00266at 280.414 kb on + strand, within CCNA_00266at 280.432 kb on - strand, within CCNA_00266at 280.464 kb on + strand, within CCNA_00266at 280.472 kb on - strand, within CCNA_00266at 280.501 kb on + strand, within CCNA_00266at 280.514 kb on + strand, within CCNA_00266at 280.537 kb on + strand, within CCNA_00266at 280.570 kb on + strand, within CCNA_00266at 280.576 kb on + strand, within CCNA_00266at 280.579 kb on - strand, within CCNA_00266at 280.579 kb on - strand, within CCNA_00266at 280.597 kb on + strand, within CCNA_00266at 280.605 kb on - strand, within CCNA_00266at 280.610 kb on + strand, within CCNA_00266at 280.633 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.657 kb on + strand, within CCNA_00266at 280.665 kb on - strand, within CCNA_00266at 280.665 kb on - strand, within CCNA_00266at 280.665 kb on - strand, within CCNA_00266at 280.665 kb on - strand, within CCNA_00266at 280.695 kb on + strand, within CCNA_00266at 280.703 kb on - strand, within CCNA_00266at 280.724 kb on + strandat 280.732 kb on - strandat 280.732 kb on - strandat 280.732 kb on - strandat 280.784 kb on - strandat 280.784 kb on - strandat 280.794 kb on - strandat 280.820 kb on + strandat 280.829 kb on - strandat 280.846 kb on + strandat 280.846 kb on + strandat 280.846 kb on + strandat 280.854 kb on - strandat 280.856 kb on + strandat 280.898 kb on + strandat 280.905 kb on - strandat 280.918 kb on - strandat 280.920 kb on + strandat 280.920 kb on + strandat 280.920 kb on + strandat 280.920 kb on + strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.928 kb on - strandat 280.929 kb on + strandat 280.952 kb on - strandat 280.958 kb on - strandat 280.958 kb on - strandat 280.973 kb on + strandat 280.986 kb on + strandat 281.020 kb on + strandat 281.020 kb on + strandat 281.020 kb on + strandat 281.028 kb on - strand, within CCNA_00267at 281.028 kb on - strand, within CCNA_00267at 281.040 kb on - strand, within CCNA_00267at 281.046 kb on + strand, within CCNA_00267at 281.053 kb on - strand, within CCNA_00267at 281.061 kb on + strand, within CCNA_00267at 281.066 kb on + strand, within CCNA_00267at 281.067 kb on + strand, within CCNA_00267at 281.067 kb on + strand, within CCNA_00267at 281.069 kb on - strand, within CCNA_00267at 281.119 kb on + strand, within CCNA_00267at 281.122 kb on - strand, within CCNA_00267at 281.124 kb on + strand, within CCNA_00267at 281.124 kb on + strand, within CCNA_00267at 281.124 kb on + strand, within CCNA_00267at 281.124 kb on + strand, within CCNA_00267at 281.132 kb on - strand, within CCNA_00267at 281.133 kb on - strand, within CCNA_00267at 281.133 kb on - strand, within CCNA_00267at 281.136 kb on + strand, within CCNA_00267at 281.143 kb on - strand, within CCNA_00267at 281.143 kb on - strand, within CCNA_00267at 281.143 kb on - strand, within CCNA_00267at 281.143 kb on - strand, within CCNA_00267at 281.222 kb on - strand, within CCNA_00267at 281.246 kb on + strand, within CCNA_00267at 281.261 kb on - strand, within CCNA_00267at 281.261 kb on - strand, within CCNA_00267at 281.351 kb on + strand, within CCNA_00267at 281.378 kb on - strand, within CCNA_00267at 281.391 kb on - strand, within CCNA_00267at 281.408 kb on - strand, within CCNA_00267at 281.416 kb on - strand, within CCNA_00267at 281.421 kb on - strand, within CCNA_00267at 281.477 kb on - strand, within CCNA_00267at 281.532 kb on - strand, within CCNA_00267at 281.548 kb on - strand, within CCNA_00267at 281.548 kb on - strand, within CCNA_00267at 281.614 kb on + strand, within CCNA_00267at 281.619 kb on + strand, within CCNA_00267at 281.619 kb on + strand, within CCNA_00267at 281.622 kb on - strand, within CCNA_00267at 281.627 kb on - strand, within CCNA_00267at 281.627 kb on - strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.651 kb on + strand, within CCNA_00267at 281.658 kb on - strand, within CCNA_00267at 281.659 kb on - strand, within CCNA_00267at 281.659 kb on - strand, within CCNA_00267at 281.659 kb on - strand, within CCNA_00267at 281.659 kb on - strand, within CCNA_00267at 281.682 kb on - strand, within CCNA_00267at 281.684 kb on + strand, within CCNA_00267at 281.720 kb on - strand, within CCNA_00267at 281.729 kb on - strand, within CCNA_00267at 281.729 kb on - strand, within CCNA_00267at 281.787 kb on - strandat 281.800 kb on + strandat 281.825 kb on + strandat 281.825 kb on + strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.833 kb on - strandat 281.834 kb on - strandat 281.854 kb on - strandat 281.855 kb on - strandat 281.857 kb on - strandat 281.868 kb on + strandat 281.873 kb on + strandat 281.873 kb on + strandat 281.876 kb on + strandat 281.876 kb on + strandat 281.876 kb on - strandat 281.878 kb on + strandat 281.880 kb on + strandat 281.886 kb on - strandat 281.886 kb on - strandat 281.888 kb on - strandat 281.908 kb on + strandat 281.916 kb on - strandat 281.918 kb on - strandat 282.080 kb on + strandat 282.113 kb on + strandat 282.113 kb on + strandat 282.115 kb on + strandat 282.119 kb on - strandat 282.216 kb on + strandat 282.266 kb on - strandat 282.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM
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279,941 + CCNA_00266 0.28 -0.3
279,975 - CCNA_00266 0.30 +0.3
279,983 - CCNA_00266 0.31 +1.0
279,993 - CCNA_00266 0.32 +0.3
279,993 - CCNA_00266 0.32 -0.1
279,993 - CCNA_00266 0.32 -2.1
280,001 + CCNA_00266 0.32 -0.1
280,004 - CCNA_00266 0.33 -0.2
280,033 + CCNA_00266 0.35 -0.3
280,069 - CCNA_00266 0.38 -1.4
280,080 + CCNA_00266 0.39 +0.9
280,080 + CCNA_00266 0.39 -0.3
280,088 - CCNA_00266 0.39 -0.7
280,110 - CCNA_00266 0.41 -0.3
280,111 - CCNA_00266 0.41 -1.3
280,118 - CCNA_00266 0.42 -0.7
280,169 + CCNA_00266 0.46 -1.2
280,177 - CCNA_00266 0.47 +2.1
280,177 - CCNA_00266 0.47 -0.4
280,188 + CCNA_00266 0.48 -0.7
280,188 + CCNA_00266 0.48 +2.1
280,214 + CCNA_00266 0.50 -1.0
280,214 + CCNA_00266 0.50 -0.5
280,222 - CCNA_00266 0.50 -1.4
280,243 + CCNA_00266 0.52 -0.9
280,249 + CCNA_00266 0.52 -2.1
280,296 - CCNA_00266 0.56 -0.1
280,337 + CCNA_00266 0.60 -0.8
280,345 + CCNA_00266 0.60 -0.4
280,345 - CCNA_00266 0.60 -1.4
280,345 - CCNA_00266 0.60 -0.8
280,385 - CCNA_00266 0.63 +1.7
280,414 + CCNA_00266 0.66 -0.5
280,432 - CCNA_00266 0.67 -0.7
280,464 + CCNA_00266 0.70 -0.6
280,472 - CCNA_00266 0.70 -1.2
280,501 + CCNA_00266 0.73 -1.1
280,514 + CCNA_00266 0.74 +1.5
280,537 + CCNA_00266 0.76 -0.2
280,570 + CCNA_00266 0.78 -0.9
280,576 + CCNA_00266 0.79 -1.8
280,579 - CCNA_00266 0.79 -1.0
280,579 - CCNA_00266 0.79 -0.9
280,597 + CCNA_00266 0.81 -0.5
280,605 - CCNA_00266 0.81 +1.3
280,610 + CCNA_00266 0.82 -1.3
280,633 + CCNA_00266 0.83 +0.9
280,657 + CCNA_00266 0.85 -1.3
280,657 + CCNA_00266 0.85 -1.4
280,657 + CCNA_00266 0.85 -2.5
280,657 + CCNA_00266 0.85 -0.1
280,657 + CCNA_00266 0.85 -0.4
280,657 + CCNA_00266 0.85 -0.9
280,665 - CCNA_00266 0.86 +0.3
280,665 - CCNA_00266 0.86 +0.2
280,665 - CCNA_00266 0.86 -3.3
280,665 - CCNA_00266 0.86 +0.1
280,695 + CCNA_00266 0.88 +1.1
280,703 - CCNA_00266 0.89 -0.3
280,724 + -1.0
280,732 - -2.2
280,732 - -1.0
280,732 - +1.0
280,784 - +0.2
280,784 - -0.8
280,794 - -0.0
280,820 + -0.3
280,829 - +0.7
280,846 + -0.6
280,846 + -0.8
280,846 + -0.1
280,854 - +1.2
280,856 + -3.3
280,898 + -1.1
280,905 - +0.3
280,918 - +2.5
280,920 + -1.3
280,920 + -0.8
280,920 + +1.1
280,920 + -0.4
280,928 - +0.8
280,928 - +0.7
280,928 - +0.5
280,928 - +2.0
280,928 - -0.6
280,928 - +0.2
280,929 + -0.1
280,952 - +1.4
280,958 - +0.9
280,958 - -0.9
280,973 + -0.7
280,986 + -2.1
281,020 + -1.5
281,020 + +2.2
281,020 + +0.9
281,028 - CCNA_00267 0.10 +0.5
281,028 - CCNA_00267 0.10 +1.0
281,040 - CCNA_00267 0.12 +0.4
281,046 + CCNA_00267 0.12 -0.9
281,053 - CCNA_00267 0.13 +1.1
281,061 + CCNA_00267 0.14 -0.4
281,066 + CCNA_00267 0.14 -0.9
281,067 + CCNA_00267 0.14 -1.4
281,067 + CCNA_00267 0.14 -0.7
281,069 - CCNA_00267 0.15 +1.0
281,119 + CCNA_00267 0.20 -0.1
281,122 - CCNA_00267 0.20 +0.9
281,124 + CCNA_00267 0.20 -0.8
281,124 + CCNA_00267 0.20 -1.7
281,124 + CCNA_00267 0.20 +0.1
281,124 + CCNA_00267 0.20 -0.1
281,132 - CCNA_00267 0.21 -0.0
281,133 - CCNA_00267 0.21 +0.5
281,133 - CCNA_00267 0.21 +1.0
281,136 + CCNA_00267 0.22 -0.4
281,143 - CCNA_00267 0.23 +1.3
281,143 - CCNA_00267 0.23 -0.7
281,143 - CCNA_00267 0.23 +0.4
281,143 - CCNA_00267 0.23 +1.3
281,222 - CCNA_00267 0.31 +0.3
281,246 + CCNA_00267 0.33 -0.8
281,261 - CCNA_00267 0.35 +0.7
281,261 - CCNA_00267 0.35 -2.2
281,351 + CCNA_00267 0.45 -0.3
281,378 - CCNA_00267 0.47 -0.2
281,391 - CCNA_00267 0.49 +0.5
281,408 - CCNA_00267 0.51 -1.5
281,416 - CCNA_00267 0.51 +0.3
281,421 - CCNA_00267 0.52 -0.6
281,477 - CCNA_00267 0.58 +0.9
281,532 - CCNA_00267 0.64 +0.5
281,548 - CCNA_00267 0.65 +0.1
281,548 - CCNA_00267 0.65 -0.2
281,614 + CCNA_00267 0.73 +0.0
281,619 + CCNA_00267 0.73 +0.2
281,619 + CCNA_00267 0.73 +0.9
281,622 - CCNA_00267 0.73 +0.3
281,627 - CCNA_00267 0.74 +0.1
281,627 - CCNA_00267 0.74 +0.6
281,651 + CCNA_00267 0.76 -0.4
281,651 + CCNA_00267 0.76 -1.9
281,651 + CCNA_00267 0.76 -0.6
281,651 + CCNA_00267 0.76 +1.3
281,651 + CCNA_00267 0.76 -0.0
281,651 + CCNA_00267 0.76 -1.8
281,658 - CCNA_00267 0.77 +0.5
281,659 - CCNA_00267 0.77 +2.5
281,659 - CCNA_00267 0.77 +0.7
281,659 - CCNA_00267 0.77 +0.3
281,659 - CCNA_00267 0.77 -0.3
281,682 - CCNA_00267 0.80 +1.0
281,684 + CCNA_00267 0.80 -1.1
281,720 - CCNA_00267 0.84 +0.3
281,729 - CCNA_00267 0.85 +0.2
281,729 - CCNA_00267 0.85 +0.0
281,787 - -0.6
281,800 + -1.7
281,825 + -1.5
281,825 + -0.8
281,833 - -1.6
281,833 - -2.1
281,833 - -1.8
281,833 - +0.5
281,833 - -0.4
281,833 - -0.1
281,833 - -0.7
281,833 - -0.3
281,834 - -0.4
281,854 - +1.7
281,855 - -1.2
281,857 - -0.8
281,868 + -0.7
281,873 + -0.8
281,873 + -1.5
281,876 + +1.1
281,876 + -1.2
281,876 - -0.2
281,878 + +2.1
281,880 + -0.9
281,886 - +0.0
281,886 - -0.7
281,888 - +0.3
281,908 + +0.9
281,916 - -0.5
281,918 - -0.1
282,080 + -0.3
282,113 + +2.2
282,113 + +0.1
282,115 + -1.6
282,119 - +2.1
282,216 + +0.5
282,266 - -0.7
282,291 + +0.5

Or see this region's nucleotide sequence