Experiment: PYE with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00011 and CCNA_00012 are separated by 86 nucleotides CCNA_00012 and CCNA_00013 are separated by 20 nucleotides
CCNA_00011: CCNA_00011 - chaperone protein DnaJ, at 10,223 to 11,380
_00011
CCNA_00012: CCNA_00012 - DNA mismatch repair protein MutS, at 11,467 to 14,178
_00012
CCNA_00013: CCNA_00013 - protein-PII uridylyltransferase, at 14,199 to 17,021
_00013
Position (kb) 11
12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 10.759 kb on - strand, within CCNA_00011 at 10.963 kb on + strand, within CCNA_00011 at 11.012 kb on + strand, within CCNA_00011 at 11.057 kb on + strand, within CCNA_00011 at 11.096 kb on + strand, within CCNA_00011 at 11.155 kb on + strand, within CCNA_00011 at 11.184 kb on - strand, within CCNA_00011 at 11.190 kb on - strand, within CCNA_00011 at 11.247 kb on + strand, within CCNA_00011 at 11.273 kb on + strand at 11.317 kb on + strand at 11.317 kb on - strand at 11.325 kb on - strand at 11.344 kb on + strand at 11.361 kb on - strand at 11.366 kb on + strand at 11.372 kb on - strand at 11.382 kb on - strand at 11.383 kb on - strand at 11.446 kb on + strand at 11.497 kb on - strand at 11.646 kb on - strand at 11.716 kb on + strand at 11.751 kb on + strand, within CCNA_00012 at 11.775 kb on + strand, within CCNA_00012 at 11.807 kb on + strand, within CCNA_00012 at 11.807 kb on + strand, within CCNA_00012 at 11.813 kb on + strand, within CCNA_00012 at 11.815 kb on - strand, within CCNA_00012 at 11.934 kb on - strand, within CCNA_00012 at 11.955 kb on + strand, within CCNA_00012 at 11.967 kb on + strand, within CCNA_00012 at 11.976 kb on - strand, within CCNA_00012 at 11.991 kb on + strand, within CCNA_00012 at 11.999 kb on - strand, within CCNA_00012 at 12.002 kb on + strand, within CCNA_00012 at 12.024 kb on - strand, within CCNA_00012 at 12.027 kb on + strand, within CCNA_00012 at 12.029 kb on + strand, within CCNA_00012 at 12.035 kb on - strand, within CCNA_00012 at 12.081 kb on - strand, within CCNA_00012 at 12.082 kb on + strand, within CCNA_00012 at 12.082 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.108 kb on + strand, within CCNA_00012 at 12.111 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.121 kb on + strand, within CCNA_00012 at 12.123 kb on - strand, within CCNA_00012 at 12.126 kb on + strand, within CCNA_00012 at 12.134 kb on - strand, within CCNA_00012 at 12.150 kb on - strand, within CCNA_00012 at 12.162 kb on + strand, within CCNA_00012 at 12.170 kb on - strand, within CCNA_00012 at 12.170 kb on - strand, within CCNA_00012 at 12.172 kb on + strand, within CCNA_00012 at 12.172 kb on + strand, within CCNA_00012 at 12.178 kb on + strand, within CCNA_00012 at 12.205 kb on - strand, within CCNA_00012 at 12.221 kb on + strand, within CCNA_00012 at 12.316 kb on - strand, within CCNA_00012 at 12.349 kb on - strand, within CCNA_00012 at 12.387 kb on - strand, within CCNA_00012 at 12.459 kb on + strand, within CCNA_00012 at 12.478 kb on + strand, within CCNA_00012 at 12.496 kb on + strand, within CCNA_00012 at 12.546 kb on + strand, within CCNA_00012 at 12.546 kb on + strand, within CCNA_00012 at 12.552 kb on - strand, within CCNA_00012 at 12.562 kb on - strand, within CCNA_00012 at 12.594 kb on + strand, within CCNA_00012 at 12.612 kb on - strand, within CCNA_00012 at 12.621 kb on - strand, within CCNA_00012 at 12.635 kb on + strand, within CCNA_00012 at 12.643 kb on - strand, within CCNA_00012 at 12.647 kb on + strand, within CCNA_00012 at 12.702 kb on + strand, within CCNA_00012 at 12.707 kb on + strand, within CCNA_00012 at 12.719 kb on + strand, within CCNA_00012 at 12.719 kb on + strand, within CCNA_00012 at 12.719 kb on + strand, within CCNA_00012 at 12.734 kb on + strand, within CCNA_00012 at 12.734 kb on + strand, within CCNA_00012 at 12.737 kb on - strand, within CCNA_00012 at 12.737 kb on - strand, within CCNA_00012 at 12.737 kb on - strand, within CCNA_00012 at 12.742 kb on - strand, within CCNA_00012 at 12.744 kb on + strand, within CCNA_00012 at 12.744 kb on + strand, within CCNA_00012 at 12.744 kb on + strand, within CCNA_00012 at 12.752 kb on - strand, within CCNA_00012 at 12.752 kb on - strand, within CCNA_00012 at 12.752 kb on - strand, within CCNA_00012 at 12.752 kb on - strand, within CCNA_00012 at 12.773 kb on + strand, within CCNA_00012 at 12.781 kb on - strand, within CCNA_00012 at 12.791 kb on + strand, within CCNA_00012 at 12.855 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.869 kb on - strand, within CCNA_00012 at 12.869 kb on - strand, within CCNA_00012 at 12.869 kb on - strand, within CCNA_00012 at 12.892 kb on - strand, within CCNA_00012 at 12.951 kb on + strand, within CCNA_00012 at 12.959 kb on - strand, within CCNA_00012 at 13.004 kb on - strand, within CCNA_00012 at 13.031 kb on + strand, within CCNA_00012 at 13.041 kb on + strand, within CCNA_00012 at 13.043 kb on + strand, within CCNA_00012 at 13.051 kb on - strand, within CCNA_00012 at 13.076 kb on + strand, within CCNA_00012 at 13.133 kb on + strand, within CCNA_00012 at 13.133 kb on + strand, within CCNA_00012 at 13.133 kb on + strand, within CCNA_00012 at 13.141 kb on - strand, within CCNA_00012 at 13.168 kb on - strand, within CCNA_00012 at 13.168 kb on - strand, within CCNA_00012 at 13.170 kb on + strand, within CCNA_00012 at 13.178 kb on - strand, within CCNA_00012 at 13.210 kb on + strand, within CCNA_00012 at 13.210 kb on + strand, within CCNA_00012 at 13.218 kb on - strand, within CCNA_00012 at 13.218 kb on - strand, within CCNA_00012 at 13.232 kb on + strand, within CCNA_00012 at 13.232 kb on + strand, within CCNA_00012 at 13.270 kb on + strand, within CCNA_00012 at 13.282 kb on + strand, within CCNA_00012 at 13.283 kb on - strand, within CCNA_00012 at 13.299 kb on - strand, within CCNA_00012 at 13.313 kb on - strand, within CCNA_00012 at 13.359 kb on + strand, within CCNA_00012 at 13.359 kb on + strand, within CCNA_00012 at 13.359 kb on + strand, within CCNA_00012 at 13.359 kb on + strand, within CCNA_00012 at 13.367 kb on - strand, within CCNA_00012 at 13.381 kb on + strand, within CCNA_00012 at 13.429 kb on + strand, within CCNA_00012 at 13.434 kb on + strand, within CCNA_00012 at 13.437 kb on - strand, within CCNA_00012 at 13.551 kb on - strand, within CCNA_00012 at 13.574 kb on + strand, within CCNA_00012 at 13.594 kb on + strand, within CCNA_00012 at 13.611 kb on + strand, within CCNA_00012 at 13.622 kb on + strand, within CCNA_00012 at 13.632 kb on + strand, within CCNA_00012 at 13.660 kb on - strand, within CCNA_00012 at 13.687 kb on + strand, within CCNA_00012 at 13.702 kb on - strand, within CCNA_00012 at 13.716 kb on + strand, within CCNA_00012 at 13.719 kb on - strand, within CCNA_00012 at 13.719 kb on - strand, within CCNA_00012 at 13.724 kb on - strand, within CCNA_00012 at 13.724 kb on - strand, within CCNA_00012 at 13.724 kb on - strand, within CCNA_00012 at 13.783 kb on - strand, within CCNA_00012 at 13.783 kb on - strand, within CCNA_00012 at 13.789 kb on + strand, within CCNA_00012 at 13.790 kb on + strand, within CCNA_00012 at 13.801 kb on + strand, within CCNA_00012 at 13.809 kb on - strand, within CCNA_00012 at 13.877 kb on + strand, within CCNA_00012 at 13.904 kb on + strand, within CCNA_00012 at 13.904 kb on + strand, within CCNA_00012 at 13.948 kb on - strand at 13.955 kb on + strand at 13.963 kb on + strand at 13.963 kb on + strand at 13.963 kb on + strand at 13.963 kb on + strand at 13.963 kb on + strand at 13.971 kb on - strand at 14.041 kb on - strand at 14.045 kb on - strand at 14.059 kb on - strand at 14.061 kb on + strand at 14.075 kb on - strand at 14.117 kb on + strand at 14.117 kb on + strand at 14.117 kb on + strand at 14.117 kb on + strand at 14.125 kb on - strand at 14.125 kb on - strand at 14.154 kb on + strand at 14.154 kb on + strand at 14.162 kb on - strand at 14.162 kb on - strand at 14.162 kb on - strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.174 kb on - strand at 14.174 kb on - strand at 14.181 kb on - strand at 14.181 kb on - strand at 14.185 kb on + strand at 14.211 kb on - strand at 14.242 kb on - strand at 14.253 kb on - strand at 14.261 kb on - strand at 14.261 kb on - strand at 14.264 kb on + strand at 14.397 kb on + strand at 14.422 kb on - strand at 14.456 kb on - strand at 14.507 kb on + strand, within CCNA_00013 at 14.545 kb on + strand, within CCNA_00013 at 14.545 kb on + strand, within CCNA_00013 at 14.547 kb on - strand, within CCNA_00013 at 14.587 kb on - strand, within CCNA_00013 at 14.771 kb on + strand, within CCNA_00013 at 14.850 kb on - strand, within CCNA_00013 at 14.899 kb on + strand, within CCNA_00013 at 14.906 kb on + strand, within CCNA_00013 at 14.984 kb on + strand, within CCNA_00013 at 15.033 kb on + strand, within CCNA_00013 at 15.083 kb on - strand, within CCNA_00013 at 15.108 kb on + strand, within CCNA_00013 at 15.110 kb on - strand, within CCNA_00013 at 15.116 kb on - strand, within CCNA_00013 at 15.123 kb on - strand, within CCNA_00013
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Chloride 100 mM remove 10,759 - CCNA_00011 0.46 +0.8 10,963 + CCNA_00011 0.64 +0.7 11,012 + CCNA_00011 0.68 +0.9 11,057 + CCNA_00011 0.72 +0.4 11,096 + CCNA_00011 0.75 +0.8 11,155 + CCNA_00011 0.80 +0.4 11,184 - CCNA_00011 0.83 +1.2 11,190 - CCNA_00011 0.84 +0.5 11,247 + CCNA_00011 0.88 +0.2 11,273 + +0.3 11,317 + +1.1 11,317 - +2.3 11,325 - -0.3 11,344 + +1.3 11,361 - +0.1 11,366 + +0.4 11,372 - -0.1 11,382 - -0.2 11,383 - -0.4 11,446 + +0.9 11,497 - +0.1 11,646 - -1.4 11,716 + +0.3 11,751 + CCNA_00012 0.10 +0.7 11,775 + CCNA_00012 0.11 +0.9 11,807 + CCNA_00012 0.13 +0.4 11,807 + CCNA_00012 0.13 -0.6 11,813 + CCNA_00012 0.13 +0.6 11,815 - CCNA_00012 0.13 +1.3 11,934 - CCNA_00012 0.17 -1.5 11,955 + CCNA_00012 0.18 +1.1 11,967 + CCNA_00012 0.18 +1.2 11,976 - CCNA_00012 0.19 -0.1 11,991 + CCNA_00012 0.19 +0.4 11,999 - CCNA_00012 0.20 +0.4 12,002 + CCNA_00012 0.20 +0.1 12,024 - CCNA_00012 0.21 +3.3 12,027 + CCNA_00012 0.21 +0.1 12,029 + CCNA_00012 0.21 +0.1 12,035 - CCNA_00012 0.21 +0.3 12,081 - CCNA_00012 0.23 +1.4 12,082 + CCNA_00012 0.23 -0.0 12,082 + CCNA_00012 0.23 +0.6 12,098 + CCNA_00012 0.23 -0.3 12,098 + CCNA_00012 0.23 +0.2 12,098 + CCNA_00012 0.23 +0.9 12,108 + CCNA_00012 0.24 +1.8 12,111 - CCNA_00012 0.24 -1.9 12,116 - CCNA_00012 0.24 -2.1 12,116 - CCNA_00012 0.24 -1.3 12,116 - CCNA_00012 0.24 +0.5 12,116 - CCNA_00012 0.24 -0.1 12,121 + CCNA_00012 0.24 +1.5 12,123 - CCNA_00012 0.24 -0.8 12,126 + CCNA_00012 0.24 +2.3 12,134 - CCNA_00012 0.25 -0.9 12,150 - CCNA_00012 0.25 +1.6 12,162 + CCNA_00012 0.26 -0.0 12,170 - CCNA_00012 0.26 -0.1 12,170 - CCNA_00012 0.26 +0.3 12,172 + CCNA_00012 0.26 +1.7 12,172 + CCNA_00012 0.26 +0.5 12,178 + CCNA_00012 0.26 -1.1 12,205 - CCNA_00012 0.27 -1.2 12,221 + CCNA_00012 0.28 -0.2 12,316 - CCNA_00012 0.31 -0.7 12,349 - CCNA_00012 0.33 +1.8 12,387 - CCNA_00012 0.34 -0.9 12,459 + CCNA_00012 0.37 -0.2 12,478 + CCNA_00012 0.37 +0.9 12,496 + CCNA_00012 0.38 +0.5 12,546 + CCNA_00012 0.40 +0.0 12,546 + CCNA_00012 0.40 +0.5 12,552 - CCNA_00012 0.40 -1.5 12,562 - CCNA_00012 0.40 +0.1 12,594 + CCNA_00012 0.42 +0.1 12,612 - CCNA_00012 0.42 -0.7 12,621 - CCNA_00012 0.43 -0.1 12,635 + CCNA_00012 0.43 +1.0 12,643 - CCNA_00012 0.43 +0.8 12,647 + CCNA_00012 0.44 +0.2 12,702 + CCNA_00012 0.46 -0.4 12,707 + CCNA_00012 0.46 -0.6 12,719 + CCNA_00012 0.46 -0.2 12,719 + CCNA_00012 0.46 +0.2 12,719 + CCNA_00012 0.46 -0.2 12,734 + CCNA_00012 0.47 +3.6 12,734 + CCNA_00012 0.47 +0.4 12,737 - CCNA_00012 0.47 -1.7 12,737 - CCNA_00012 0.47 -0.2 12,737 - CCNA_00012 0.47 -0.8 12,742 - CCNA_00012 0.47 +1.5 12,744 + CCNA_00012 0.47 +0.0 12,744 + CCNA_00012 0.47 +0.5 12,744 + CCNA_00012 0.47 +0.2 12,752 - CCNA_00012 0.47 -0.2 12,752 - CCNA_00012 0.47 +0.5 12,752 - CCNA_00012 0.47 +1.8 12,752 - CCNA_00012 0.47 +1.0 12,773 + CCNA_00012 0.48 +0.0 12,781 - CCNA_00012 0.48 -0.3 12,791 + CCNA_00012 0.49 +2.7 12,855 + CCNA_00012 0.51 -0.4 12,861 + CCNA_00012 0.51 +0.5 12,861 + CCNA_00012 0.51 -0.6 12,861 + CCNA_00012 0.51 +0.5 12,861 + CCNA_00012 0.51 +1.0 12,861 + CCNA_00012 0.51 +0.3 12,861 + CCNA_00012 0.51 +0.1 12,869 - CCNA_00012 0.52 -0.3 12,869 - CCNA_00012 0.52 -0.1 12,869 - CCNA_00012 0.52 -0.6 12,892 - CCNA_00012 0.53 -2.4 12,951 + CCNA_00012 0.55 +0.2 12,959 - CCNA_00012 0.55 +0.3 13,004 - CCNA_00012 0.57 -0.3 13,031 + CCNA_00012 0.58 +0.8 13,041 + CCNA_00012 0.58 -0.1 13,043 + CCNA_00012 0.58 -0.3 13,051 - CCNA_00012 0.58 +2.7 13,076 + CCNA_00012 0.59 +0.5 13,133 + CCNA_00012 0.61 +0.5 13,133 + CCNA_00012 0.61 +0.2 13,133 + CCNA_00012 0.61 +0.5 13,141 - CCNA_00012 0.62 +0.4 13,168 - CCNA_00012 0.63 -1.3 13,168 - CCNA_00012 0.63 +0.6 13,170 + CCNA_00012 0.63 +1.2 13,178 - CCNA_00012 0.63 -1.6 13,210 + CCNA_00012 0.64 +1.0 13,210 + CCNA_00012 0.64 +1.0 13,218 - CCNA_00012 0.65 +0.0 13,218 - CCNA_00012 0.65 -0.4 13,232 + CCNA_00012 0.65 +0.5 13,232 + CCNA_00012 0.65 +0.4 13,270 + CCNA_00012 0.66 +1.0 13,282 + CCNA_00012 0.67 +0.3 13,283 - CCNA_00012 0.67 -0.9 13,299 - CCNA_00012 0.68 +0.1 13,313 - CCNA_00012 0.68 -1.5 13,359 + CCNA_00012 0.70 -0.2 13,359 + CCNA_00012 0.70 +2.8 13,359 + CCNA_00012 0.70 +0.4 13,359 + CCNA_00012 0.70 +1.3 13,367 - CCNA_00012 0.70 -1.2 13,381 + CCNA_00012 0.71 +0.9 13,429 + CCNA_00012 0.72 +2.1 13,434 + CCNA_00012 0.73 +0.7 13,437 - CCNA_00012 0.73 -0.6 13,551 - CCNA_00012 0.77 -1.0 13,574 + CCNA_00012 0.78 -0.9 13,594 + CCNA_00012 0.78 +0.6 13,611 + CCNA_00012 0.79 +0.1 13,622 + CCNA_00012 0.79 +1.3 13,632 + CCNA_00012 0.80 +1.2 13,660 - CCNA_00012 0.81 -0.4 13,687 + CCNA_00012 0.82 +0.7 13,702 - CCNA_00012 0.82 -1.5 13,716 + CCNA_00012 0.83 -1.3 13,719 - CCNA_00012 0.83 -1.0 13,719 - CCNA_00012 0.83 -1.2 13,724 - CCNA_00012 0.83 +0.1 13,724 - CCNA_00012 0.83 -0.9 13,724 - CCNA_00012 0.83 -1.6 13,783 - CCNA_00012 0.85 -0.8 13,783 - CCNA_00012 0.85 -1.4 13,789 + CCNA_00012 0.86 +1.0 13,790 + CCNA_00012 0.86 +0.3 13,801 + CCNA_00012 0.86 +0.6 13,809 - CCNA_00012 0.86 -1.2 13,877 + CCNA_00012 0.89 +0.4 13,904 + CCNA_00012 0.90 -0.1 13,904 + CCNA_00012 0.90 +0.5 13,948 - -1.6 13,955 + +0.3 13,963 + -0.2 13,963 + +4.8 13,963 + -0.6 13,963 + +0.1 13,963 + +0.1 13,971 - -0.7 14,041 - -1.8 14,045 - +2.0 14,059 - +0.3 14,061 + +0.8 14,075 - +0.8 14,117 + -0.5 14,117 + -0.5 14,117 + +0.2 14,117 + -0.2 14,125 - -0.5 14,125 - +0.3 14,154 + +0.6 14,154 + -0.8 14,162 - +0.1 14,162 - -2.0 14,162 - +0.3 14,166 + +0.2 14,166 + -0.2 14,166 + +0.3 14,166 + +0.3 14,166 + -0.1 14,166 + +1.9 14,174 - -0.4 14,174 - +0.1 14,181 - -1.3 14,181 - -0.5 14,185 + +0.3 14,211 - +2.5 14,242 - -1.4 14,253 - +2.7 14,261 - +0.0 14,261 - +0.0 14,264 + -0.9 14,397 + +3.6 14,422 - +2.9 14,456 - +3.2 14,507 + CCNA_00013 0.11 +3.2 14,545 + CCNA_00013 0.12 +4.3 14,545 + CCNA_00013 0.12 +3.0 14,547 - CCNA_00013 0.12 +2.8 14,587 - CCNA_00013 0.14 +3.7 14,771 + CCNA_00013 0.20 +3.7 14,850 - CCNA_00013 0.23 +2.7 14,899 + CCNA_00013 0.25 +3.6 14,906 + CCNA_00013 0.25 +3.6 14,984 + CCNA_00013 0.28 +3.6 15,033 + CCNA_00013 0.30 +2.8 15,083 - CCNA_00013 0.31 +4.3 15,108 + CCNA_00013 0.32 +3.3 15,110 - CCNA_00013 0.32 +3.2 15,116 - CCNA_00013 0.32 +3.0 15,123 - CCNA_00013 0.33 +3.6
Or see this region's nucleotide sequence