Experiment: sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20525 and ABZR86_RS20530 are separated by 186 nucleotides ABZR86_RS20530 and ABZR86_RS20535 are separated by 87 nucleotides ABZR86_RS20535 and ABZR86_RS20540 are separated by 43 nucleotides
ABZR86_RS20525: ABZR86_RS20525 - Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein, at 51,282 to 52,385
_RS20525
ABZR86_RS20530: ABZR86_RS20530 - YccS family putative transporter, at 52,572 to 54,725
_RS20530
ABZR86_RS20535: ABZR86_RS20535 - membrane protein, at 54,813 to 55,361
_RS20535
ABZR86_RS20540: ABZR86_RS20540 - 3-oxoacyl-ACP reductase FabG, at 55,405 to 56,133
_RS20540
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 51.607 kb on - strand, within ABZR86_RS20525 at 51.651 kb on + strand, within ABZR86_RS20525 at 51.652 kb on - strand, within ABZR86_RS20525 at 51.798 kb on + strand, within ABZR86_RS20525 at 51.799 kb on - strand, within ABZR86_RS20525 at 51.804 kb on + strand, within ABZR86_RS20525 at 51.805 kb on - strand, within ABZR86_RS20525 at 51.805 kb on - strand, within ABZR86_RS20525 at 51.957 kb on + strand, within ABZR86_RS20525 at 51.957 kb on + strand, within ABZR86_RS20525 at 51.958 kb on - strand, within ABZR86_RS20525 at 51.958 kb on - strand, within ABZR86_RS20525 at 51.978 kb on + strand, within ABZR86_RS20525 at 51.979 kb on - strand, within ABZR86_RS20525 at 52.117 kb on - strand, within ABZR86_RS20525 at 52.117 kb on - strand, within ABZR86_RS20525 at 52.129 kb on - strand, within ABZR86_RS20525 at 52.180 kb on - strand, within ABZR86_RS20525 at 52.272 kb on + strand, within ABZR86_RS20525 at 52.272 kb on + strand, within ABZR86_RS20525 at 52.273 kb on - strand, within ABZR86_RS20525 at 52.273 kb on - strand, within ABZR86_RS20525 at 52.273 kb on - strand, within ABZR86_RS20525 at 52.273 kb on - strand, within ABZR86_RS20525 at 52.274 kb on + strand, within ABZR86_RS20525 at 52.275 kb on - strand at 52.403 kb on + strand at 52.404 kb on - strand at 52.559 kb on + strand at 52.559 kb on + strand at 52.559 kb on + strand at 52.559 kb on + strand at 52.560 kb on - strand at 52.560 kb on - strand at 52.560 kb on - strand at 52.602 kb on - strand at 52.680 kb on + strand at 52.680 kb on + strand at 52.680 kb on + strand at 52.681 kb on - strand at 52.681 kb on - strand at 52.681 kb on - strand at 52.810 kb on - strand, within ABZR86_RS20530 at 52.963 kb on - strand, within ABZR86_RS20530 at 52.963 kb on - strand, within ABZR86_RS20530 at 53.328 kb on + strand, within ABZR86_RS20530 at 53.328 kb on + strand, within ABZR86_RS20530 at 53.328 kb on + strand, within ABZR86_RS20530 at 53.329 kb on - strand, within ABZR86_RS20530 at 53.373 kb on + strand, within ABZR86_RS20530 at 53.624 kb on + strand, within ABZR86_RS20530 at 53.624 kb on + strand, within ABZR86_RS20530 at 53.624 kb on + strand, within ABZR86_RS20530 at 53.625 kb on - strand, within ABZR86_RS20530 at 53.818 kb on - strand, within ABZR86_RS20530 at 53.896 kb on - strand, within ABZR86_RS20530 at 54.055 kb on - strand, within ABZR86_RS20530 at 54.055 kb on - strand, within ABZR86_RS20530 at 54.619 kb on - strand at 54.858 kb on + strand at 54.858 kb on + strand at 54.859 kb on - strand at 54.859 kb on - strand at 54.859 kb on - strand at 55.000 kb on - strand, within ABZR86_RS20535 at 55.036 kb on + strand, within ABZR86_RS20535 at 55.037 kb on - strand, within ABZR86_RS20535 at 55.037 kb on - strand, within ABZR86_RS20535 at 55.102 kb on - strand, within ABZR86_RS20535 at 55.171 kb on - strand, within ABZR86_RS20535 at 55.171 kb on - strand, within ABZR86_RS20535 at 55.171 kb on - strand, within ABZR86_RS20535 at 55.173 kb on - strand, within ABZR86_RS20535 at 55.272 kb on + strand, within ABZR86_RS20535 at 55.273 kb on - strand, within ABZR86_RS20535 at 55.290 kb on + strand, within ABZR86_RS20535 at 55.291 kb on - strand, within ABZR86_RS20535 at 55.483 kb on + strand, within ABZR86_RS20540 at 55.484 kb on - strand, within ABZR86_RS20540
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 40 mM remove 51,607 - ABZR86_RS20525 0.29 -0.8 51,651 + ABZR86_RS20525 0.33 +0.1 51,652 - ABZR86_RS20525 0.34 +1.6 51,798 + ABZR86_RS20525 0.47 -0.5 51,799 - ABZR86_RS20525 0.47 +0.1 51,804 + ABZR86_RS20525 0.47 +0.5 51,805 - ABZR86_RS20525 0.47 +0.2 51,805 - ABZR86_RS20525 0.47 +0.2 51,957 + ABZR86_RS20525 0.61 +0.9 51,957 + ABZR86_RS20525 0.61 -0.7 51,958 - ABZR86_RS20525 0.61 -0.1 51,958 - ABZR86_RS20525 0.61 +0.2 51,978 + ABZR86_RS20525 0.63 +0.1 51,979 - ABZR86_RS20525 0.63 -0.1 52,117 - ABZR86_RS20525 0.76 -0.3 52,117 - ABZR86_RS20525 0.76 +0.3 52,129 - ABZR86_RS20525 0.77 -0.3 52,180 - ABZR86_RS20525 0.81 -0.5 52,272 + ABZR86_RS20525 0.90 +0.5 52,272 + ABZR86_RS20525 0.90 +1.0 52,273 - ABZR86_RS20525 0.90 +0.5 52,273 - ABZR86_RS20525 0.90 +0.1 52,273 - ABZR86_RS20525 0.90 -0.3 52,273 - ABZR86_RS20525 0.90 +0.3 52,274 + ABZR86_RS20525 0.90 +0.4 52,275 - -0.9 52,403 + -0.2 52,404 - +0.4 52,559 + -1.0 52,559 + +0.9 52,559 + +0.1 52,559 + -0.2 52,560 - -0.3 52,560 - +0.4 52,560 - +0.2 52,602 - -0.0 52,680 + +1.8 52,680 + +0.2 52,680 + -0.6 52,681 - +0.1 52,681 - -1.2 52,681 - -0.3 52,810 - ABZR86_RS20530 0.11 -0.0 52,963 - ABZR86_RS20530 0.18 -0.6 52,963 - ABZR86_RS20530 0.18 +0.1 53,328 + ABZR86_RS20530 0.35 +0.8 53,328 + ABZR86_RS20530 0.35 +0.3 53,328 + ABZR86_RS20530 0.35 +0.3 53,329 - ABZR86_RS20530 0.35 -0.1 53,373 + ABZR86_RS20530 0.37 +0.1 53,624 + ABZR86_RS20530 0.49 +0.2 53,624 + ABZR86_RS20530 0.49 +0.3 53,624 + ABZR86_RS20530 0.49 +1.3 53,625 - ABZR86_RS20530 0.49 +1.1 53,818 - ABZR86_RS20530 0.58 +0.6 53,896 - ABZR86_RS20530 0.61 -0.0 54,055 - ABZR86_RS20530 0.69 -0.2 54,055 - ABZR86_RS20530 0.69 +0.7 54,619 - -0.3 54,858 + +0.4 54,858 + +1.1 54,859 - -2.2 54,859 - -0.0 54,859 - +0.5 55,000 - ABZR86_RS20535 0.34 -0.6 55,036 + ABZR86_RS20535 0.41 -0.8 55,037 - ABZR86_RS20535 0.41 +0.3 55,037 - ABZR86_RS20535 0.41 -0.3 55,102 - ABZR86_RS20535 0.53 -0.3 55,171 - ABZR86_RS20535 0.65 -0.5 55,171 - ABZR86_RS20535 0.65 +0.1 55,171 - ABZR86_RS20535 0.65 +0.3 55,173 - ABZR86_RS20535 0.66 -0.1 55,272 + ABZR86_RS20535 0.84 +1.0 55,273 - ABZR86_RS20535 0.84 +0.5 55,290 + ABZR86_RS20535 0.87 +0.6 55,291 - ABZR86_RS20535 0.87 -0.6 55,483 + ABZR86_RS20540 0.11 +0.4 55,484 - ABZR86_RS20540 0.11 +0.9
Or see this region's nucleotide sequence