Experiment: sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19135 and ABZR86_RS19140 are separated by 147 nucleotides ABZR86_RS19140 and ABZR86_RS19145 are separated by 58 nucleotides ABZR86_RS19145 and ABZR86_RS19150 are separated by 567 nucleotides
ABZR86_RS19135: ABZR86_RS19135 - hypothetical protein, at 271,612 to 271,872
_RS19135
ABZR86_RS19140: ABZR86_RS19140 - outer membrane beta-barrel protein, at 272,020 to 272,745
_RS19140
ABZR86_RS19145: ABZR86_RS19145 - glucan ABC transporter ATP-binding protein/ permease, at 272,804 to 274,552
_RS19145
ABZR86_RS19150: ABZR86_RS19150 - TonB-dependent receptor, at 275,120 to 278,413
_RS19150
Position (kb) 272
273
274
275 Strain fitness (log2 ratio) -1
0
1 at 271.878 kb on + strand at 271.878 kb on + strand at 271.900 kb on + strand at 271.924 kb on - strand at 272.103 kb on - strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.129 kb on - strand, within ABZR86_RS19140 at 272.129 kb on - strand, within ABZR86_RS19140 at 272.161 kb on + strand, within ABZR86_RS19140 at 272.287 kb on + strand, within ABZR86_RS19140 at 272.425 kb on + strand, within ABZR86_RS19140 at 272.446 kb on + strand, within ABZR86_RS19140 at 272.446 kb on + strand, within ABZR86_RS19140 at 272.608 kb on + strand, within ABZR86_RS19140 at 272.608 kb on + strand, within ABZR86_RS19140 at 272.720 kb on + strand at 272.720 kb on + strand at 272.805 kb on + strand at 272.806 kb on - strand at 272.806 kb on - strand at 272.807 kb on + strand at 272.807 kb on + strand at 272.808 kb on - strand at 272.808 kb on - strand at 272.808 kb on - strand at 273.166 kb on - strand, within ABZR86_RS19145 at 273.188 kb on - strand, within ABZR86_RS19145 at 273.402 kb on + strand, within ABZR86_RS19145 at 273.662 kb on - strand, within ABZR86_RS19145 at 274.534 kb on - strand at 274.534 kb on - strand at 274.782 kb on + strand at 274.783 kb on - strand at 274.906 kb on + strand at 275.036 kb on + strand at 275.036 kb on + strand at 275.037 kb on - strand at 275.187 kb on - strand at 275.324 kb on + strand at 275.324 kb on + strand at 275.411 kb on + strand at 275.412 kb on - strand at 275.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 40 mM remove 271,878 + -0.1 271,878 + +0.8 271,900 + +0.8 271,924 - +0.3 272,103 - ABZR86_RS19140 0.11 +0.5 272,128 + ABZR86_RS19140 0.15 -0.5 272,128 + ABZR86_RS19140 0.15 +0.3 272,128 + ABZR86_RS19140 0.15 +0.6 272,129 - ABZR86_RS19140 0.15 -1.1 272,129 - ABZR86_RS19140 0.15 -0.0 272,161 + ABZR86_RS19140 0.19 +1.1 272,287 + ABZR86_RS19140 0.37 +0.4 272,425 + ABZR86_RS19140 0.56 -0.5 272,446 + ABZR86_RS19140 0.59 -0.4 272,446 + ABZR86_RS19140 0.59 -0.2 272,608 + ABZR86_RS19140 0.81 +1.3 272,608 + ABZR86_RS19140 0.81 +1.1 272,720 + -1.6 272,720 + +0.2 272,805 + -0.0 272,806 - -0.4 272,806 - -0.1 272,807 + -1.0 272,807 + +0.7 272,808 - -0.7 272,808 - -0.2 272,808 - -0.2 273,166 - ABZR86_RS19145 0.21 -0.2 273,188 - ABZR86_RS19145 0.22 +0.7 273,402 + ABZR86_RS19145 0.34 -0.7 273,662 - ABZR86_RS19145 0.49 -0.6 274,534 - +0.2 274,534 - +1.4 274,782 + +0.4 274,783 - -0.5 274,906 + +0.6 275,036 + -0.3 275,036 + -0.5 275,037 - -1.4 275,187 - -0.3 275,324 + +0.4 275,324 + +0.4 275,411 + +0.2 275,412 - -0.2 275,447 - +0.7
Or see this region's nucleotide sequence