Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08655

Experiment: sodium fluoride 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS08650 and ABZR86_RS08655 are separated by 152 nucleotidesABZR86_RS08655 and ABZR86_RS08660 are separated by 22 nucleotidesABZR86_RS08660 and ABZR86_RS08665 are separated by 101 nucleotides ABZR86_RS08650: ABZR86_RS08650 - FUSC family protein, at 1,936,226 to 1,938,313 _RS08650 ABZR86_RS08655: ABZR86_RS08655 - amidohydrolase family protein, at 1,938,466 to 1,939,479 _RS08655 ABZR86_RS08660: ABZR86_RS08660 - hypothetical protein, at 1,939,502 to 1,940,008 _RS08660 ABZR86_RS08665: ABZR86_RS08665 - kynureninase, at 1,940,110 to 1,941,396 _RS08665 Position (kb) 1938 1939 1940Strain fitness (log2 ratio) -2 -1 0 1at 1937.609 kb on + strand, within ABZR86_RS08650at 1937.609 kb on + strand, within ABZR86_RS08650at 1937.741 kb on + strand, within ABZR86_RS08650at 1937.741 kb on + strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.742 kb on - strand, within ABZR86_RS08650at 1937.817 kb on - strand, within ABZR86_RS08650at 1938.312 kb on - strandat 1938.312 kb on - strandat 1938.312 kb on - strandat 1938.352 kb on + strandat 1938.352 kb on + strandat 1938.352 kb on + strandat 1938.353 kb on - strandat 1938.353 kb on - strandat 1938.353 kb on - strandat 1938.395 kb on + strandat 1938.395 kb on + strandat 1938.395 kb on + strandat 1938.396 kb on - strandat 1938.396 kb on - strandat 1938.396 kb on - strandat 1938.396 kb on - strandat 1938.453 kb on + strandat 1938.454 kb on - strandat 1938.583 kb on + strand, within ABZR86_RS08655at 1938.583 kb on + strand, within ABZR86_RS08655at 1938.583 kb on + strand, within ABZR86_RS08655at 1938.583 kb on + strand, within ABZR86_RS08655at 1938.583 kb on + strand, within ABZR86_RS08655at 1938.583 kb on + strand, within ABZR86_RS08655at 1938.583 kb on + strand, within ABZR86_RS08655at 1938.584 kb on - strand, within ABZR86_RS08655at 1938.584 kb on - strand, within ABZR86_RS08655at 1938.584 kb on - strand, within ABZR86_RS08655at 1938.584 kb on - strand, within ABZR86_RS08655at 1938.584 kb on - strand, within ABZR86_RS08655at 1938.584 kb on - strand, within ABZR86_RS08655at 1938.652 kb on + strand, within ABZR86_RS08655at 1938.653 kb on - strand, within ABZR86_RS08655at 1938.709 kb on + strand, within ABZR86_RS08655at 1938.710 kb on - strand, within ABZR86_RS08655at 1938.796 kb on + strand, within ABZR86_RS08655at 1939.024 kb on + strand, within ABZR86_RS08655at 1939.024 kb on + strand, within ABZR86_RS08655at 1939.237 kb on + strand, within ABZR86_RS08655at 1939.238 kb on - strand, within ABZR86_RS08655at 1939.238 kb on - strand, within ABZR86_RS08655at 1939.252 kb on + strand, within ABZR86_RS08655at 1939.253 kb on - strand, within ABZR86_RS08655at 1939.291 kb on + strand, within ABZR86_RS08655at 1939.291 kb on + strand, within ABZR86_RS08655at 1939.291 kb on + strand, within ABZR86_RS08655at 1939.291 kb on + strand, within ABZR86_RS08655at 1939.339 kb on + strand, within ABZR86_RS08655at 1939.340 kb on - strand, within ABZR86_RS08655at 1939.757 kb on + strand, within ABZR86_RS08660at 1939.758 kb on - strand, within ABZR86_RS08660at 1939.758 kb on - strand, within ABZR86_RS08660at 1939.838 kb on + strand, within ABZR86_RS08660at 1939.838 kb on + strand, within ABZR86_RS08660at 1939.838 kb on + strand, within ABZR86_RS08660at 1939.838 kb on + strand, within ABZR86_RS08660at 1939.839 kb on - strand, within ABZR86_RS08660at 1939.839 kb on - strand, within ABZR86_RS08660at 1939.839 kb on - strand, within ABZR86_RS08660at 1939.839 kb on - strand, within ABZR86_RS08660at 1939.839 kb on - strand, within ABZR86_RS08660at 1939.871 kb on + strand, within ABZR86_RS08660at 1939.871 kb on + strand, within ABZR86_RS08660at 1939.871 kb on + strand, within ABZR86_RS08660at 1939.871 kb on + strand, within ABZR86_RS08660at 1939.871 kb on + strand, within ABZR86_RS08660at 1939.871 kb on + strand, within ABZR86_RS08660at 1939.872 kb on - strand, within ABZR86_RS08660at 1939.872 kb on - strand, within ABZR86_RS08660at 1939.872 kb on - strand, within ABZR86_RS08660at 1939.883 kb on + strand, within ABZR86_RS08660at 1940.007 kb on - strandat 1940.072 kb on + strandat 1940.073 kb on - strandat 1940.073 kb on - strandat 1940.073 kb on - strandat 1940.122 kb on + strandat 1940.122 kb on + strandat 1940.123 kb on - strandat 1940.329 kb on - strand, within ABZR86_RS08665at 1940.353 kb on + strand, within ABZR86_RS08665at 1940.354 kb on - strand, within ABZR86_RS08665at 1940.362 kb on + strand, within ABZR86_RS08665at 1940.362 kb on + strand, within ABZR86_RS08665at 1940.362 kb on + strand, within ABZR86_RS08665at 1940.362 kb on + strand, within ABZR86_RS08665at 1940.362 kb on + strand, within ABZR86_RS08665at 1940.362 kb on + strand, within ABZR86_RS08665at 1940.465 kb on - strand, within ABZR86_RS08665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 40 mM
remove
1,937,609 + ABZR86_RS08650 0.66 +0.9
1,937,609 + ABZR86_RS08650 0.66 -1.6
1,937,741 + ABZR86_RS08650 0.73 +0.6
1,937,741 + ABZR86_RS08650 0.73 -0.8
1,937,742 - ABZR86_RS08650 0.73 +0.8
1,937,742 - ABZR86_RS08650 0.73 +0.4
1,937,742 - ABZR86_RS08650 0.73 +0.5
1,937,742 - ABZR86_RS08650 0.73 +0.4
1,937,742 - ABZR86_RS08650 0.73 +0.4
1,937,742 - ABZR86_RS08650 0.73 +0.9
1,937,742 - ABZR86_RS08650 0.73 -0.6
1,937,742 - ABZR86_RS08650 0.73 +0.7
1,937,742 - ABZR86_RS08650 0.73 -0.7
1,937,742 - ABZR86_RS08650 0.73 +0.1
1,937,817 - ABZR86_RS08650 0.76 -0.3
1,938,312 - -0.0
1,938,312 - -0.0
1,938,312 - -0.4
1,938,352 + -0.0
1,938,352 + -0.2
1,938,352 + +0.3
1,938,353 - +0.8
1,938,353 - -0.7
1,938,353 - -0.5
1,938,395 + -0.7
1,938,395 + -0.5
1,938,395 + -0.3
1,938,396 - +0.7
1,938,396 - +0.2
1,938,396 - +0.3
1,938,396 - +0.1
1,938,453 + +0.5
1,938,454 - +0.4
1,938,583 + ABZR86_RS08655 0.12 -1.1
1,938,583 + ABZR86_RS08655 0.12 +0.0
1,938,583 + ABZR86_RS08655 0.12 -0.7
1,938,583 + ABZR86_RS08655 0.12 -1.0
1,938,583 + ABZR86_RS08655 0.12 -0.4
1,938,583 + ABZR86_RS08655 0.12 -0.2
1,938,583 + ABZR86_RS08655 0.12 -0.2
1,938,584 - ABZR86_RS08655 0.12 -0.5
1,938,584 - ABZR86_RS08655 0.12 -2.1
1,938,584 - ABZR86_RS08655 0.12 +0.6
1,938,584 - ABZR86_RS08655 0.12 -0.9
1,938,584 - ABZR86_RS08655 0.12 -1.1
1,938,584 - ABZR86_RS08655 0.12 -0.2
1,938,652 + ABZR86_RS08655 0.18 +0.2
1,938,653 - ABZR86_RS08655 0.18 -0.7
1,938,709 + ABZR86_RS08655 0.24 -0.3
1,938,710 - ABZR86_RS08655 0.24 -0.9
1,938,796 + ABZR86_RS08655 0.33 -0.2
1,939,024 + ABZR86_RS08655 0.55 +0.5
1,939,024 + ABZR86_RS08655 0.55 -0.3
1,939,237 + ABZR86_RS08655 0.76 +0.3
1,939,238 - ABZR86_RS08655 0.76 +0.6
1,939,238 - ABZR86_RS08655 0.76 -0.3
1,939,252 + ABZR86_RS08655 0.78 +0.1
1,939,253 - ABZR86_RS08655 0.78 -0.4
1,939,291 + ABZR86_RS08655 0.81 -0.6
1,939,291 + ABZR86_RS08655 0.81 +0.4
1,939,291 + ABZR86_RS08655 0.81 +0.2
1,939,291 + ABZR86_RS08655 0.81 +0.0
1,939,339 + ABZR86_RS08655 0.86 +0.1
1,939,340 - ABZR86_RS08655 0.86 -0.1
1,939,757 + ABZR86_RS08660 0.50 +0.1
1,939,758 - ABZR86_RS08660 0.50 +0.4
1,939,758 - ABZR86_RS08660 0.50 -0.6
1,939,838 + ABZR86_RS08660 0.66 -0.5
1,939,838 + ABZR86_RS08660 0.66 +0.7
1,939,838 + ABZR86_RS08660 0.66 -0.1
1,939,838 + ABZR86_RS08660 0.66 -0.1
1,939,839 - ABZR86_RS08660 0.66 +0.1
1,939,839 - ABZR86_RS08660 0.66 +0.5
1,939,839 - ABZR86_RS08660 0.66 -0.2
1,939,839 - ABZR86_RS08660 0.66 -0.2
1,939,839 - ABZR86_RS08660 0.66 +0.4
1,939,871 + ABZR86_RS08660 0.73 -0.0
1,939,871 + ABZR86_RS08660 0.73 -0.4
1,939,871 + ABZR86_RS08660 0.73 -0.5
1,939,871 + ABZR86_RS08660 0.73 -0.1
1,939,871 + ABZR86_RS08660 0.73 +0.2
1,939,871 + ABZR86_RS08660 0.73 -0.8
1,939,872 - ABZR86_RS08660 0.73 +0.3
1,939,872 - ABZR86_RS08660 0.73 +0.7
1,939,872 - ABZR86_RS08660 0.73 +0.5
1,939,883 + ABZR86_RS08660 0.75 +0.4
1,940,007 - +0.6
1,940,072 + -0.5
1,940,073 - +0.1
1,940,073 - +1.2
1,940,073 - +0.7
1,940,122 + +0.9
1,940,122 + +0.4
1,940,123 - +0.7
1,940,329 - ABZR86_RS08665 0.17 +0.1
1,940,353 + ABZR86_RS08665 0.19 +0.3
1,940,354 - ABZR86_RS08665 0.19 +0.1
1,940,362 + ABZR86_RS08665 0.20 -0.1
1,940,362 + ABZR86_RS08665 0.20 +0.6
1,940,362 + ABZR86_RS08665 0.20 -2.1
1,940,362 + ABZR86_RS08665 0.20 -0.1
1,940,362 + ABZR86_RS08665 0.20 +0.7
1,940,362 + ABZR86_RS08665 0.20 -2.0
1,940,465 - ABZR86_RS08665 0.28 -0.2

Or see this region's nucleotide sequence