Experiment: sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03635 and ABZR86_RS03640 are separated by 199 nucleotides ABZR86_RS03640 and ABZR86_RS03645 are separated by 2 nucleotides ABZR86_RS03645 and ABZR86_RS03650 are separated by 435 nucleotides
ABZR86_RS03635: ABZR86_RS03635 - hypothetical protein, at 789,153 to 792,686
_RS03635
ABZR86_RS03640: ABZR86_RS03640 - DUF488 family protein, at 792,886 to 793,440
_RS03640
ABZR86_RS03645: ABZR86_RS03645 - DUF2945 domain-containing protein, at 793,443 to 793,664
_RS03645
ABZR86_RS03650: ABZR86_RS03650 - TonB-dependent receptor, at 794,100 to 796,928
_RS03650
Position (kb) 793
794 Strain fitness (log2 ratio) -1
0
1
2 at 792.471 kb on + strand at 792.565 kb on - strand at 792.565 kb on - strand at 792.565 kb on - strand at 792.681 kb on + strand at 792.827 kb on + strand at 792.828 kb on - strand at 792.828 kb on - strand at 792.920 kb on + strand at 792.920 kb on + strand at 792.921 kb on - strand at 792.997 kb on - strand, within ABZR86_RS03640 at 793.029 kb on - strand, within ABZR86_RS03640 at 793.029 kb on - strand, within ABZR86_RS03640 at 793.444 kb on + strand at 793.481 kb on + strand, within ABZR86_RS03645 at 793.522 kb on + strand, within ABZR86_RS03645 at 793.565 kb on - strand, within ABZR86_RS03645 at 793.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 40 mM remove 792,471 + +0.9 792,565 - +0.4 792,565 - +0.2 792,565 - +1.0 792,681 + +0.7 792,827 + -0.1 792,828 - -0.2 792,828 - +2.1 792,920 + -0.7 792,920 + +0.1 792,921 - -0.7 792,997 - ABZR86_RS03640 0.20 +0.3 793,029 - ABZR86_RS03640 0.26 -0.2 793,029 - ABZR86_RS03640 0.26 -0.3 793,444 + +0.1 793,481 + ABZR86_RS03645 0.17 -0.8 793,522 + ABZR86_RS03645 0.36 +0.2 793,565 - ABZR86_RS03645 0.55 -1.2 793,875 - -0.2
Or see this region's nucleotide sequence