Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01415

Experiment: sodium fluoride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01410 and ABZR86_RS01415 are separated by 365 nucleotidesABZR86_RS01415 and ABZR86_RS01420 overlap by 8 nucleotidesABZR86_RS01420 and ABZR86_RS01425 are separated by 26 nucleotides ABZR86_RS01410: ABZR86_RS01410 - hypothetical protein, at 302,569 to 303,219 _RS01410 ABZR86_RS01415: ABZR86_RS01415 - histidine kinase, at 303,585 to 304,829 _RS01415 ABZR86_RS01420: ABZR86_RS01420 - LytTR family DNA-binding domain-containing protein, at 304,822 to 305,589 _RS01420 ABZR86_RS01425: ABZR86_RS01425 - hypothetical protein, at 305,616 to 305,963 _RS01425 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1at 302.878 kb on + strand, within ABZR86_RS01410at 302.879 kb on - strand, within ABZR86_RS01410at 302.936 kb on + strand, within ABZR86_RS01410at 302.936 kb on + strand, within ABZR86_RS01410at 302.937 kb on - strand, within ABZR86_RS01410at 303.038 kb on + strand, within ABZR86_RS01410at 303.057 kb on + strand, within ABZR86_RS01410at 303.057 kb on + strand, within ABZR86_RS01410at 303.277 kb on + strandat 303.278 kb on - strandat 303.278 kb on - strandat 303.292 kb on + strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.293 kb on - strandat 303.299 kb on - strandat 303.398 kb on + strandat 303.398 kb on + strandat 303.398 kb on + strandat 303.399 kb on - strandat 303.399 kb on - strandat 303.399 kb on - strandat 303.399 kb on - strandat 303.402 kb on + strandat 303.402 kb on + strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.403 kb on - strandat 303.404 kb on + strandat 303.404 kb on + strandat 303.546 kb on + strandat 303.546 kb on + strandat 303.547 kb on - strandat 303.679 kb on - strandat 303.679 kb on - strandat 304.311 kb on + strand, within ABZR86_RS01415at 304.311 kb on + strand, within ABZR86_RS01415at 304.311 kb on + strand, within ABZR86_RS01415at 304.311 kb on + strand, within ABZR86_RS01415at 304.312 kb on - strand, within ABZR86_RS01415at 304.312 kb on - strand, within ABZR86_RS01415at 304.312 kb on - strand, within ABZR86_RS01415at 304.369 kb on - strand, within ABZR86_RS01415at 304.369 kb on - strand, within ABZR86_RS01415at 304.369 kb on - strand, within ABZR86_RS01415at 304.444 kb on - strand, within ABZR86_RS01415at 304.444 kb on - strand, within ABZR86_RS01415at 304.734 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.827 kb on + strandat 304.828 kb on - strandat 304.828 kb on - strandat 304.828 kb on - strandat 304.828 kb on - strandat 304.828 kb on - strandat 305.083 kb on + strand, within ABZR86_RS01420at 305.084 kb on - strand, within ABZR86_RS01420at 305.119 kb on + strand, within ABZR86_RS01420at 305.120 kb on - strand, within ABZR86_RS01420at 305.120 kb on - strand, within ABZR86_RS01420at 305.332 kb on + strand, within ABZR86_RS01420at 305.332 kb on + strand, within ABZR86_RS01420at 305.333 kb on - strand, within ABZR86_RS01420at 305.333 kb on - strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.353 kb on + strand, within ABZR86_RS01420at 305.354 kb on - strand, within ABZR86_RS01420at 305.354 kb on - strand, within ABZR86_RS01420at 305.354 kb on - strand, within ABZR86_RS01420at 305.627 kb on - strandat 305.627 kb on - strandat 305.627 kb on - strandat 305.627 kb on - strandat 305.641 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 40 mM
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302,878 + ABZR86_RS01410 0.47 +0.5
302,879 - ABZR86_RS01410 0.48 -0.4
302,936 + ABZR86_RS01410 0.56 +0.3
302,936 + ABZR86_RS01410 0.56 +0.7
302,937 - ABZR86_RS01410 0.57 +0.9
303,038 + ABZR86_RS01410 0.72 +0.3
303,057 + ABZR86_RS01410 0.75 +0.5
303,057 + ABZR86_RS01410 0.75 -0.1
303,277 + +0.8
303,278 - +0.4
303,278 - +0.1
303,292 + -0.2
303,293 - +0.3
303,293 - -0.3
303,293 - -0.6
303,293 - -1.1
303,293 - +1.7
303,293 - +0.5
303,299 - -1.0
303,398 + +0.2
303,398 + -0.1
303,398 + -0.6
303,399 - -0.3
303,399 - +0.2
303,399 - +1.4
303,399 - -0.9
303,402 + -1.5
303,402 + -0.2
303,403 - +0.1
303,403 - +0.1
303,403 - +0.1
303,403 - -0.2
303,403 - -0.7
303,403 - -0.9
303,403 - -0.6
303,403 - +0.0
303,403 - -2.4
303,403 - -0.6
303,404 + +1.1
303,404 + -0.2
303,546 + -0.7
303,546 + +0.7
303,547 - +0.3
303,679 - +0.3
303,679 - -0.8
304,311 + ABZR86_RS01415 0.58 +0.9
304,311 + ABZR86_RS01415 0.58 +0.6
304,311 + ABZR86_RS01415 0.58 +0.2
304,311 + ABZR86_RS01415 0.58 +0.2
304,312 - ABZR86_RS01415 0.58 -0.4
304,312 - ABZR86_RS01415 0.58 +0.1
304,312 - ABZR86_RS01415 0.58 -0.4
304,369 - ABZR86_RS01415 0.63 +0.2
304,369 - ABZR86_RS01415 0.63 +0.2
304,369 - ABZR86_RS01415 0.63 -0.3
304,444 - ABZR86_RS01415 0.69 +0.3
304,444 - ABZR86_RS01415 0.69 -0.8
304,734 + -0.9
304,827 + -0.9
304,827 + +0.0
304,827 + -1.1
304,827 + -0.2
304,827 + -0.0
304,827 + +0.6
304,828 - -0.1
304,828 - +0.5
304,828 - -0.3
304,828 - -0.2
304,828 - +0.1
305,083 + ABZR86_RS01420 0.34 -0.1
305,084 - ABZR86_RS01420 0.34 -1.2
305,119 + ABZR86_RS01420 0.39 +0.3
305,120 - ABZR86_RS01420 0.39 -3.0
305,120 - ABZR86_RS01420 0.39 -0.1
305,332 + ABZR86_RS01420 0.66 -0.6
305,332 + ABZR86_RS01420 0.66 +0.1
305,333 - ABZR86_RS01420 0.67 -2.7
305,333 - ABZR86_RS01420 0.67 +0.1
305,353 + ABZR86_RS01420 0.69 +0.4
305,353 + ABZR86_RS01420 0.69 +0.5
305,353 + ABZR86_RS01420 0.69 +0.6
305,353 + ABZR86_RS01420 0.69 -0.2
305,353 + ABZR86_RS01420 0.69 -0.5
305,354 - ABZR86_RS01420 0.69 +0.4
305,354 - ABZR86_RS01420 0.69 +0.1
305,354 - ABZR86_RS01420 0.69 -0.7
305,627 - -0.4
305,627 - +0.4
305,627 - +0.1
305,627 - -0.6
305,641 - -0.2

Or see this region's nucleotide sequence