Experiment: Chloride 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt groEL and Synpcc7942_0686 are separated by 429 nucleotides Synpcc7942_0686 and Synpcc7942_0687 overlap by 11 nucleotides
Synpcc7942_0685: groEL - chaperonin GroEL, at 678,881 to 680,548
groEL
Synpcc7942_0686: Synpcc7942_0686 - FO synthase subunit 2, at 680,978 to 682,138
_0686
Synpcc7942_0687: Synpcc7942_0687 - hypothetical protein, at 682,128 to 683,747
_0687
Position (kb) 680
681
682
683 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 680.019 kb on - strand, within groEL at 680.034 kb on + strand, within groEL at 680.067 kb on + strand, within groEL at 680.079 kb on + strand, within groEL at 680.106 kb on + strand, within groEL at 680.116 kb on - strand, within groEL at 680.130 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.132 kb on + strand, within groEL at 680.143 kb on + strand, within groEL at 680.150 kb on + strand, within groEL at 680.151 kb on - strand, within groEL at 680.158 kb on - strand, within groEL at 680.176 kb on + strand, within groEL at 680.239 kb on - strand, within groEL at 680.242 kb on - strand, within groEL at 680.261 kb on + strand, within groEL at 680.266 kb on + strand, within groEL at 680.267 kb on - strand, within groEL at 680.269 kb on - strand at 680.276 kb on - strand, within groEL at 680.336 kb on + strand, within groEL at 680.338 kb on - strand, within groEL at 680.338 kb on - strand, within groEL at 680.371 kb on + strand, within groEL at 680.379 kb on - strand, within groEL at 680.379 kb on - strand, within groEL at 680.497 kb on + strand at 680.540 kb on - strand at 680.545 kb on - strand at 680.550 kb on - strand at 680.572 kb on - strand at 680.572 kb on - strand at 680.594 kb on - strand at 680.652 kb on + strand at 680.679 kb on + strand at 680.686 kb on + strand at 680.705 kb on + strand at 680.712 kb on + strand at 680.814 kb on + strand at 680.817 kb on + strand at 680.822 kb on - strand at 680.826 kb on + strand at 680.826 kb on + strand at 680.834 kb on - strand at 680.870 kb on + strand at 680.870 kb on + strand at 680.878 kb on - strand at 680.932 kb on - strand at 680.963 kb on + strand at 680.968 kb on + strand at 681.094 kb on + strand, within Synpcc7942_0686 at 681.118 kb on - strand, within Synpcc7942_0686 at 681.120 kb on + strand, within Synpcc7942_0686 at 681.123 kb on + strand, within Synpcc7942_0686 at 681.138 kb on - strand, within Synpcc7942_0686 at 681.232 kb on + strand, within Synpcc7942_0686 at 681.235 kb on - strand, within Synpcc7942_0686 at 681.325 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.387 kb on + strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.395 kb on - strand, within Synpcc7942_0686 at 681.400 kb on - strand, within Synpcc7942_0686 at 681.482 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand, within Synpcc7942_0686 at 681.484 kb on + strand at 681.490 kb on - strand, within Synpcc7942_0686 at 681.492 kb on - strand, within Synpcc7942_0686 at 681.525 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.539 kb on + strand, within Synpcc7942_0686 at 681.593 kb on + strand, within Synpcc7942_0686 at 681.615 kb on + strand, within Synpcc7942_0686 at 681.615 kb on - strand, within Synpcc7942_0686 at 681.615 kb on - strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.652 kb on + strand, within Synpcc7942_0686 at 681.660 kb on - strand, within Synpcc7942_0686 at 681.660 kb on - strand, within Synpcc7942_0686 at 681.671 kb on - strand, within Synpcc7942_0686 at 681.680 kb on - strand, within Synpcc7942_0686 at 681.686 kb on - strand, within Synpcc7942_0686 at 681.760 kb on + strand, within Synpcc7942_0686 at 681.767 kb on - strand, within Synpcc7942_0686 at 681.814 kb on + strand, within Synpcc7942_0686 at 681.819 kb on + strand, within Synpcc7942_0686 at 681.822 kb on - strand, within Synpcc7942_0686 at 681.848 kb on - strand, within Synpcc7942_0686 at 681.850 kb on + strand, within Synpcc7942_0686 at 681.865 kb on + strand, within Synpcc7942_0686 at 681.869 kb on + strand, within Synpcc7942_0686 at 681.870 kb on + strand, within Synpcc7942_0686 at 681.882 kb on - strand, within Synpcc7942_0686 at 681.883 kb on - strand, within Synpcc7942_0686 at 681.904 kb on + strand, within Synpcc7942_0686 at 681.925 kb on - strand, within Synpcc7942_0686 at 681.926 kb on - strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.928 kb on + strand, within Synpcc7942_0686 at 681.936 kb on - strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.938 kb on + strand, within Synpcc7942_0686 at 681.946 kb on - strand, within Synpcc7942_0686 at 682.021 kb on - strand at 682.026 kb on - strand at 682.026 kb on - strand at 682.027 kb on + strand at 682.028 kb on + strand at 682.051 kb on - strand at 682.053 kb on - strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.077 kb on + strand at 682.085 kb on - strand at 682.085 kb on - strand at 682.107 kb on - strand at 682.113 kb on - strand at 682.124 kb on + strand at 682.124 kb on + strand at 682.127 kb on - strand at 682.141 kb on - strand at 682.153 kb on + strand at 682.153 kb on + strand at 682.153 kb on + strand at 682.161 kb on - strand at 682.221 kb on - strand at 682.222 kb on - strand at 682.299 kb on + strand, within Synpcc7942_0687 at 682.311 kb on + strand, within Synpcc7942_0687 at 682.326 kb on + strand, within Synpcc7942_0687 at 682.349 kb on + strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.352 kb on - strand, within Synpcc7942_0687 at 682.354 kb on + strand, within Synpcc7942_0687 at 682.354 kb on + strand, within Synpcc7942_0687 at 682.357 kb on - strand, within Synpcc7942_0687 at 682.357 kb on - strand, within Synpcc7942_0687 at 682.367 kb on - strand, within Synpcc7942_0687 at 682.367 kb on - strand, within Synpcc7942_0687 at 682.384 kb on + strand, within Synpcc7942_0687 at 682.391 kb on + strand, within Synpcc7942_0687 at 682.395 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.405 kb on + strand, within Synpcc7942_0687 at 682.445 kb on - strand, within Synpcc7942_0687 at 682.475 kb on + strand, within Synpcc7942_0687 at 682.477 kb on - strand, within Synpcc7942_0687 at 682.486 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.498 kb on + strand, within Synpcc7942_0687 at 682.506 kb on - strand, within Synpcc7942_0687 at 682.507 kb on - strand, within Synpcc7942_0687 at 682.519 kb on - strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.552 kb on + strand, within Synpcc7942_0687 at 682.560 kb on - strand, within Synpcc7942_0687 at 682.619 kb on - strand, within Synpcc7942_0687 at 682.623 kb on + strand, within Synpcc7942_0687 at 682.626 kb on - strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.628 kb on + strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.636 kb on - strand, within Synpcc7942_0687 at 682.654 kb on + strand, within Synpcc7942_0687 at 682.662 kb on - strand, within Synpcc7942_0687 at 682.687 kb on - strand, within Synpcc7942_0687 at 682.713 kb on - strand, within Synpcc7942_0687 at 682.735 kb on + strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.743 kb on - strand, within Synpcc7942_0687 at 682.753 kb on - strand, within Synpcc7942_0687 at 682.754 kb on + strand, within Synpcc7942_0687 at 682.771 kb on + strand, within Synpcc7942_0687 at 682.787 kb on + strand, within Synpcc7942_0687 at 682.789 kb on - strand, within Synpcc7942_0687 at 682.795 kb on - strand, within Synpcc7942_0687 at 682.803 kb on + strand, within Synpcc7942_0687 at 682.825 kb on + strand, within Synpcc7942_0687 at 682.830 kb on + strand, within Synpcc7942_0687 at 682.838 kb on - strand, within Synpcc7942_0687 at 682.916 kb on + strand, within Synpcc7942_0687 at 682.916 kb on + strand, within Synpcc7942_0687 at 682.922 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 682.924 kb on - strand, within Synpcc7942_0687 at 683.097 kb on + strand, within Synpcc7942_0687 at 683.105 kb on + strand, within Synpcc7942_0687 at 683.116 kb on - strand, within Synpcc7942_0687 at 683.116 kb on - strand, within Synpcc7942_0687 at 683.121 kb on - strand, within Synpcc7942_0687
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 31.25 mM remove 680,019 - groEL Synpcc7942_0685 0.68 +2.4 680,034 + groEL Synpcc7942_0685 0.69 +0.5 680,067 + groEL Synpcc7942_0685 0.71 -1.7 680,079 + groEL Synpcc7942_0685 0.72 +0.6 680,106 + groEL Synpcc7942_0685 0.73 +1.4 680,116 - groEL Synpcc7942_0685 0.74 +0.9 680,130 + groEL Synpcc7942_0685 0.75 -2.7 680,132 + groEL Synpcc7942_0685 0.75 -0.1 680,132 + groEL Synpcc7942_0685 0.75 -0.4 680,132 + groEL Synpcc7942_0685 0.75 +1.8 680,143 + groEL Synpcc7942_0685 0.76 +2.8 680,150 + groEL Synpcc7942_0685 0.76 +1.0 680,151 - groEL Synpcc7942_0685 0.76 -0.7 680,158 - groEL Synpcc7942_0685 0.77 +0.5 680,176 + groEL Synpcc7942_0685 0.78 +2.0 680,239 - groEL Synpcc7942_0685 0.81 -0.3 680,242 - groEL Synpcc7942_0685 0.82 +1.9 680,261 + groEL Synpcc7942_0685 0.83 +1.2 680,266 + groEL Synpcc7942_0685 0.83 -0.1 680,267 - groEL Synpcc7942_0685 0.83 +1.9 680,269 - -1.1 680,276 - groEL Synpcc7942_0685 0.84 +0.2 680,336 + groEL Synpcc7942_0685 0.87 +1.3 680,338 - groEL Synpcc7942_0685 0.87 -0.2 680,338 - groEL Synpcc7942_0685 0.87 +0.9 680,371 + groEL Synpcc7942_0685 0.89 +0.2 680,379 - groEL Synpcc7942_0685 0.90 +1.7 680,379 - groEL Synpcc7942_0685 0.90 +0.2 680,497 + +1.6 680,540 - +1.1 680,545 - +1.5 680,550 - -0.1 680,572 - +0.7 680,572 - -0.5 680,594 - +1.3 680,652 + +1.0 680,679 + -1.8 680,686 + +2.2 680,705 + -2.1 680,712 + -0.0 680,814 + -2.1 680,817 + -1.1 680,822 - +0.6 680,826 + +1.9 680,826 + -2.7 680,834 - +0.1 680,870 + -2.3 680,870 + +0.8 680,878 - -1.1 680,932 - +1.5 680,963 + +1.7 680,968 + -1.5 681,094 + Synpcc7942_0686 0.10 -1.1 681,118 - Synpcc7942_0686 0.12 +0.5 681,120 + Synpcc7942_0686 0.12 +2.1 681,123 + Synpcc7942_0686 0.12 -1.1 681,138 - Synpcc7942_0686 0.14 +1.8 681,232 + Synpcc7942_0686 0.22 +0.2 681,235 - Synpcc7942_0686 0.22 -0.5 681,325 + Synpcc7942_0686 0.30 -1.1 681,387 + Synpcc7942_0686 0.35 -1.1 681,387 + Synpcc7942_0686 0.35 -0.1 681,387 + Synpcc7942_0686 0.35 -0.8 681,395 - Synpcc7942_0686 0.36 +2.0 681,395 - Synpcc7942_0686 0.36 +2.0 681,395 - Synpcc7942_0686 0.36 +1.5 681,395 - Synpcc7942_0686 0.36 +0.8 681,400 - Synpcc7942_0686 0.36 +2.0 681,482 + Synpcc7942_0686 0.43 -1.4 681,484 + Synpcc7942_0686 0.44 +2.1 681,484 + -1.1 681,490 - Synpcc7942_0686 0.44 +0.1 681,492 - Synpcc7942_0686 0.44 +0.6 681,525 + Synpcc7942_0686 0.47 +0.5 681,539 + Synpcc7942_0686 0.48 +1.3 681,539 + Synpcc7942_0686 0.48 -2.1 681,539 + Synpcc7942_0686 0.48 -0.8 681,593 + Synpcc7942_0686 0.53 +0.4 681,615 + Synpcc7942_0686 0.55 -1.1 681,615 - Synpcc7942_0686 0.55 +0.8 681,615 - Synpcc7942_0686 0.55 -1.1 681,652 + Synpcc7942_0686 0.58 +0.2 681,652 + Synpcc7942_0686 0.58 +2.2 681,652 + Synpcc7942_0686 0.58 +1.8 681,652 + Synpcc7942_0686 0.58 +2.6 681,652 + Synpcc7942_0686 0.58 +1.1 681,660 - Synpcc7942_0686 0.59 -2.1 681,660 - Synpcc7942_0686 0.59 -3.4 681,671 - Synpcc7942_0686 0.60 -1.1 681,680 - Synpcc7942_0686 0.60 -0.1 681,686 - Synpcc7942_0686 0.61 -0.7 681,760 + Synpcc7942_0686 0.67 +0.7 681,767 - Synpcc7942_0686 0.68 +1.3 681,814 + Synpcc7942_0686 0.72 -2.1 681,819 + Synpcc7942_0686 0.72 +0.2 681,822 - Synpcc7942_0686 0.73 -2.1 681,848 - Synpcc7942_0686 0.75 -2.7 681,850 + Synpcc7942_0686 0.75 -0.1 681,865 + Synpcc7942_0686 0.76 -0.9 681,869 + Synpcc7942_0686 0.77 -0.0 681,870 + Synpcc7942_0686 0.77 +0.7 681,882 - Synpcc7942_0686 0.78 -2.7 681,883 - Synpcc7942_0686 0.78 -2.1 681,904 + Synpcc7942_0686 0.80 +0.1 681,925 - Synpcc7942_0686 0.82 -3.1 681,926 - Synpcc7942_0686 0.82 +0.2 681,928 + Synpcc7942_0686 0.82 +2.1 681,928 + Synpcc7942_0686 0.82 -2.1 681,928 + Synpcc7942_0686 0.82 -3.1 681,936 - Synpcc7942_0686 0.83 +1.9 681,938 + Synpcc7942_0686 0.83 +0.8 681,938 + Synpcc7942_0686 0.83 -0.8 681,938 + Synpcc7942_0686 0.83 +0.6 681,946 - Synpcc7942_0686 0.83 -0.4 682,021 - -1.1 682,026 - -1.1 682,026 - +1.9 682,027 + -3.7 682,028 + -0.1 682,051 - -1.1 682,053 - +2.1 682,077 + +3.0 682,077 + +0.4 682,077 + -0.9 682,077 + +0.3 682,085 - +0.5 682,085 - -1.1 682,107 - +0.7 682,113 - +0.5 682,124 + +2.1 682,124 + +0.9 682,127 - -3.9 682,141 - -0.3 682,153 + +0.4 682,153 + -0.5 682,153 + +1.0 682,161 - +0.2 682,221 - -2.4 682,222 - +0.5 682,299 + Synpcc7942_0687 0.11 -1.4 682,311 + Synpcc7942_0687 0.11 +2.4 682,326 + Synpcc7942_0687 0.12 +1.4 682,349 + Synpcc7942_0687 0.14 +3.5 682,352 - Synpcc7942_0687 0.14 -0.5 682,352 - Synpcc7942_0687 0.14 -1.1 682,352 - Synpcc7942_0687 0.14 -2.1 682,354 + Synpcc7942_0687 0.14 +1.3 682,354 + Synpcc7942_0687 0.14 +4.0 682,357 - Synpcc7942_0687 0.14 +0.8 682,357 - Synpcc7942_0687 0.14 -2.1 682,367 - Synpcc7942_0687 0.15 +0.3 682,367 - Synpcc7942_0687 0.15 +1.1 682,384 + Synpcc7942_0687 0.16 -2.1 682,391 + Synpcc7942_0687 0.16 +0.9 682,395 + Synpcc7942_0687 0.16 +0.3 682,405 + Synpcc7942_0687 0.17 +0.7 682,405 + Synpcc7942_0687 0.17 +0.8 682,405 + Synpcc7942_0687 0.17 -1.1 682,445 - Synpcc7942_0687 0.20 -0.4 682,475 + Synpcc7942_0687 0.21 +1.7 682,477 - Synpcc7942_0687 0.22 +3.2 682,486 + Synpcc7942_0687 0.22 -1.3 682,498 + Synpcc7942_0687 0.23 +3.1 682,498 + Synpcc7942_0687 0.23 -1.1 682,498 + Synpcc7942_0687 0.23 +1.6 682,498 + Synpcc7942_0687 0.23 +0.7 682,506 - Synpcc7942_0687 0.23 +0.0 682,507 - Synpcc7942_0687 0.23 -3.1 682,519 - Synpcc7942_0687 0.24 -1.1 682,552 + Synpcc7942_0687 0.26 +0.2 682,552 + Synpcc7942_0687 0.26 -1.1 682,552 + Synpcc7942_0687 0.26 -1.7 682,560 - Synpcc7942_0687 0.27 +0.5 682,619 - Synpcc7942_0687 0.30 -2.1 682,623 + Synpcc7942_0687 0.31 +1.7 682,626 - Synpcc7942_0687 0.31 -1.1 682,628 + Synpcc7942_0687 0.31 +1.0 682,628 + Synpcc7942_0687 0.31 +0.1 682,628 + Synpcc7942_0687 0.31 -2.1 682,628 + Synpcc7942_0687 0.31 +1.4 682,628 + Synpcc7942_0687 0.31 +2.0 682,628 + Synpcc7942_0687 0.31 -2.1 682,628 + Synpcc7942_0687 0.31 -0.5 682,628 + Synpcc7942_0687 0.31 -2.1 682,636 - Synpcc7942_0687 0.31 -1.8 682,636 - Synpcc7942_0687 0.31 +0.7 682,636 - Synpcc7942_0687 0.31 -1.1 682,636 - Synpcc7942_0687 0.31 +3.0 682,636 - Synpcc7942_0687 0.31 -0.2 682,636 - Synpcc7942_0687 0.31 +2.2 682,636 - Synpcc7942_0687 0.31 -1.1 682,636 - Synpcc7942_0687 0.31 -1.1 682,636 - Synpcc7942_0687 0.31 -1.1 682,654 + Synpcc7942_0687 0.32 +0.4 682,662 - Synpcc7942_0687 0.33 -3.1 682,687 - Synpcc7942_0687 0.35 -1.8 682,713 - Synpcc7942_0687 0.36 -2.4 682,735 + Synpcc7942_0687 0.37 +0.9 682,743 - Synpcc7942_0687 0.38 +0.1 682,743 - Synpcc7942_0687 0.38 +1.1 682,743 - Synpcc7942_0687 0.38 +1.2 682,753 - Synpcc7942_0687 0.39 -0.1 682,754 + Synpcc7942_0687 0.39 -0.4 682,771 + Synpcc7942_0687 0.40 -3.1 682,787 + Synpcc7942_0687 0.41 +1.6 682,789 - Synpcc7942_0687 0.41 +0.2 682,795 - Synpcc7942_0687 0.41 -2.7 682,803 + Synpcc7942_0687 0.42 -2.1 682,825 + Synpcc7942_0687 0.43 -1.1 682,830 + Synpcc7942_0687 0.43 -0.3 682,838 - Synpcc7942_0687 0.44 -0.1 682,916 + Synpcc7942_0687 0.49 -0.9 682,916 + Synpcc7942_0687 0.49 -0.1 682,922 - Synpcc7942_0687 0.49 +1.1 682,924 - Synpcc7942_0687 0.49 +1.1 682,924 - Synpcc7942_0687 0.49 -2.1 682,924 - Synpcc7942_0687 0.49 +3.5 683,097 + Synpcc7942_0687 0.60 +1.8 683,105 + Synpcc7942_0687 0.60 -2.7 683,116 - Synpcc7942_0687 0.61 +0.2 683,116 - Synpcc7942_0687 0.61 -0.1 683,121 - Synpcc7942_0687 0.61 +0.1
Or see this region's nucleotide sequence