Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0177

Experiment: Chloride 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0174 and Synpcc7942_0175 overlap by 4 nucleotidesSynpcc7942_0175 and Synpcc7942_0176 are separated by 112 nucleotidesSynpcc7942_0176 and Synpcc7942_0177 overlap by 4 nucleotidesSynpcc7942_0177 and Synpcc7942_0178 overlap by 4 nucleotides Synpcc7942_0174: Synpcc7942_0174 - hypothetical protein, at 173,111 to 173,989 _0174 Synpcc7942_0175: Synpcc7942_0175 - hypothetical protein, at 173,986 to 174,198 _0175 Synpcc7942_0176: Synpcc7942_0176 - hypothetical protein, at 174,311 to 174,712 _0176 Synpcc7942_0177: Synpcc7942_0177 - ABC-type uncharacterized transport system permease component-like, at 174,709 to 175,497 _0177 Synpcc7942_0178: Synpcc7942_0178 - ATPase, at 175,494 to 176,471 _0178 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 173.715 kb on + strand, within Synpcc7942_0174at 173.790 kb on + strand, within Synpcc7942_0174at 173.790 kb on + strand, within Synpcc7942_0174at 173.807 kb on + strand, within Synpcc7942_0174at 173.813 kb on - strand, within Synpcc7942_0174at 173.825 kb on - strand, within Synpcc7942_0174at 173.846 kb on - strand, within Synpcc7942_0174at 173.871 kb on + strand, within Synpcc7942_0174at 173.873 kb on + strand, within Synpcc7942_0174at 173.905 kb on - strandat 173.960 kb on + strandat 174.191 kb on + strandat 174.217 kb on - strandat 174.219 kb on + strandat 174.230 kb on + strandat 174.230 kb on + strandat 174.336 kb on - strandat 174.362 kb on - strand, within Synpcc7942_0176at 174.377 kb on - strand, within Synpcc7942_0176at 174.398 kb on + strand, within Synpcc7942_0176at 174.422 kb on - strand, within Synpcc7942_0176at 174.444 kb on + strand, within Synpcc7942_0176at 174.449 kb on + strand, within Synpcc7942_0176at 174.521 kb on + strand, within Synpcc7942_0176at 174.533 kb on - strand, within Synpcc7942_0176at 174.540 kb on + strand, within Synpcc7942_0176at 174.554 kb on + strand, within Synpcc7942_0176at 174.556 kb on - strand, within Synpcc7942_0176at 174.575 kb on + strand, within Synpcc7942_0176at 174.625 kb on + strand, within Synpcc7942_0176at 174.626 kb on + strand, within Synpcc7942_0176at 174.637 kb on + strand, within Synpcc7942_0176at 174.664 kb on - strand, within Synpcc7942_0176at 174.666 kb on + strand, within Synpcc7942_0176at 174.666 kb on + strand, within Synpcc7942_0176at 174.671 kb on + strandat 174.671 kb on + strand, within Synpcc7942_0176at 174.679 kb on - strandat 174.679 kb on - strandat 174.730 kb on - strandat 174.767 kb on + strandat 174.788 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.832 kb on - strand, within Synpcc7942_0177at 174.832 kb on - strand, within Synpcc7942_0177at 174.860 kb on + strand, within Synpcc7942_0177at 174.873 kb on - strand, within Synpcc7942_0177at 174.903 kb on - strand, within Synpcc7942_0177at 174.910 kb on + strand, within Synpcc7942_0177at 174.916 kb on + strand, within Synpcc7942_0177at 174.944 kb on + strand, within Synpcc7942_0177at 174.956 kb on + strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.966 kb on + strand, within Synpcc7942_0177at 174.974 kb on + strand, within Synpcc7942_0177at 174.982 kb on - strand, within Synpcc7942_0177at 175.005 kb on + strand, within Synpcc7942_0177at 175.005 kb on + strand, within Synpcc7942_0177at 175.020 kb on + strand, within Synpcc7942_0177at 175.035 kb on + strand, within Synpcc7942_0177at 175.093 kb on + strand, within Synpcc7942_0177at 175.093 kb on + strand, within Synpcc7942_0177at 175.109 kb on - strand, within Synpcc7942_0177at 175.125 kb on + strand, within Synpcc7942_0177at 175.127 kb on + strand, within Synpcc7942_0177at 175.127 kb on + strand, within Synpcc7942_0177at 175.135 kb on - strand, within Synpcc7942_0177at 175.208 kb on + strand, within Synpcc7942_0177at 175.234 kb on + strand, within Synpcc7942_0177at 175.273 kb on + strand, within Synpcc7942_0177at 175.284 kb on + strand, within Synpcc7942_0177at 175.292 kb on - strand, within Synpcc7942_0177at 175.317 kb on + strand, within Synpcc7942_0177at 175.346 kb on - strand, within Synpcc7942_0177at 175.346 kb on - strand, within Synpcc7942_0177at 175.362 kb on + strand, within Synpcc7942_0177at 175.365 kb on + strandat 175.370 kb on - strand, within Synpcc7942_0177at 175.397 kb on + strand, within Synpcc7942_0177at 175.415 kb on - strand, within Synpcc7942_0177at 175.432 kb on + strandat 175.457 kb on + strandat 175.465 kb on - strandat 175.465 kb on - strandat 175.465 kb on - strandat 175.467 kb on + strandat 175.475 kb on - strandat 175.489 kb on - strandat 175.500 kb on - strandat 175.505 kb on + strandat 175.535 kb on - strandat 175.549 kb on + strandat 175.557 kb on - strandat 175.582 kb on + strandat 175.598 kb on + strand, within Synpcc7942_0178at 175.653 kb on + strand, within Synpcc7942_0178at 175.664 kb on + strand, within Synpcc7942_0178at 175.691 kb on + strand, within Synpcc7942_0178at 175.709 kb on - strand, within Synpcc7942_0178at 175.710 kb on + strand, within Synpcc7942_0178at 175.730 kb on + strand, within Synpcc7942_0178at 175.737 kb on + strand, within Synpcc7942_0178at 175.757 kb on + strand, within Synpcc7942_0178at 175.778 kb on - strand, within Synpcc7942_0178at 175.793 kb on - strand, within Synpcc7942_0178at 175.800 kb on - strand, within Synpcc7942_0178at 175.812 kb on - strand, within Synpcc7942_0178at 175.825 kb on + strand, within Synpcc7942_0178at 175.825 kb on + strand, within Synpcc7942_0178at 175.833 kb on - strand, within Synpcc7942_0178at 175.857 kb on + strand, within Synpcc7942_0178at 175.913 kb on + strand, within Synpcc7942_0178at 175.924 kb on + strand, within Synpcc7942_0178at 175.925 kb on + strand, within Synpcc7942_0178at 175.925 kb on + strand, within Synpcc7942_0178at 175.933 kb on - strand, within Synpcc7942_0178at 175.933 kb on - strand, within Synpcc7942_0178at 175.949 kb on + strand, within Synpcc7942_0178at 175.977 kb on + strand, within Synpcc7942_0178at 175.987 kb on - strand, within Synpcc7942_0178at 175.992 kb on - strand, within Synpcc7942_0178at 176.009 kb on - strand, within Synpcc7942_0178at 176.050 kb on + strand, within Synpcc7942_0178at 176.097 kb on + strand, within Synpcc7942_0178at 176.105 kb on - strand, within Synpcc7942_0178at 176.110 kb on + strand, within Synpcc7942_0178at 176.126 kb on + strand, within Synpcc7942_0178at 176.127 kb on + strand, within Synpcc7942_0178at 176.127 kb on + strand, within Synpcc7942_0178at 176.134 kb on - strand, within Synpcc7942_0178at 176.134 kb on - strand, within Synpcc7942_0178at 176.135 kb on - strand, within Synpcc7942_0178at 176.135 kb on - strand, within Synpcc7942_0178at 176.198 kb on - strand, within Synpcc7942_0178at 176.216 kb on + strand, within Synpcc7942_0178at 176.221 kb on + strand, within Synpcc7942_0178at 176.251 kb on + strand, within Synpcc7942_0178at 176.255 kb on + strand, within Synpcc7942_0178at 176.264 kb on - strand, within Synpcc7942_0178at 176.264 kb on - strand, within Synpcc7942_0178at 176.340 kb on - strand, within Synpcc7942_0178at 176.362 kb on + strand, within Synpcc7942_0178at 176.423 kb on - strandat 176.427 kb on - strandat 176.437 kb on + strandat 176.443 kb on + strandat 176.444 kb on - strandat 176.445 kb on - strandat 176.445 kb on - strandat 176.451 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 31.25 mM
remove
173,715 + Synpcc7942_0174 0.69 -2.0
173,790 + Synpcc7942_0174 0.77 -3.4
173,790 + Synpcc7942_0174 0.77 +0.7
173,807 + Synpcc7942_0174 0.79 +2.2
173,813 - Synpcc7942_0174 0.80 -0.0
173,825 - Synpcc7942_0174 0.81 -2.0
173,846 - Synpcc7942_0174 0.84 +0.5
173,871 + Synpcc7942_0174 0.86 -2.6
173,873 + Synpcc7942_0174 0.87 -2.6
173,905 - +1.3
173,960 + -1.0
174,191 + +1.3
174,217 - +0.1
174,219 + -2.0
174,230 + +1.5
174,230 + -0.6
174,336 - -0.9
174,362 - Synpcc7942_0176 0.13 +0.6
174,377 - Synpcc7942_0176 0.16 -0.2
174,398 + Synpcc7942_0176 0.22 +2.4
174,422 - Synpcc7942_0176 0.28 +0.7
174,444 + Synpcc7942_0176 0.33 +1.6
174,449 + Synpcc7942_0176 0.34 +1.8
174,521 + Synpcc7942_0176 0.52 +0.8
174,533 - Synpcc7942_0176 0.55 +1.9
174,540 + Synpcc7942_0176 0.57 -2.0
174,554 + Synpcc7942_0176 0.60 +4.1
174,556 - Synpcc7942_0176 0.61 +1.5
174,575 + Synpcc7942_0176 0.66 -0.3
174,625 + Synpcc7942_0176 0.78 +3.1
174,626 + Synpcc7942_0176 0.78 +0.5
174,637 + Synpcc7942_0176 0.81 -0.0
174,664 - Synpcc7942_0176 0.88 -0.8
174,666 + Synpcc7942_0176 0.88 -0.0
174,666 + Synpcc7942_0176 0.88 +1.8
174,671 + +1.8
174,671 + Synpcc7942_0176 0.90 +3.3
174,679 - -2.6
174,679 - +0.3
174,730 - +2.1
174,767 + +2.6
174,788 - Synpcc7942_0177 0.10 +0.4
174,812 - Synpcc7942_0177 0.13 +1.7
174,812 - Synpcc7942_0177 0.13 +4.0
174,812 - Synpcc7942_0177 0.13 +2.7
174,832 - Synpcc7942_0177 0.16 +2.9
174,832 - Synpcc7942_0177 0.16 +1.5
174,860 + Synpcc7942_0177 0.19 -2.0
174,873 - Synpcc7942_0177 0.21 +1.3
174,903 - Synpcc7942_0177 0.25 +2.7
174,910 + Synpcc7942_0177 0.25 +3.9
174,916 + Synpcc7942_0177 0.26 -1.0
174,944 + Synpcc7942_0177 0.30 -2.0
174,956 + Synpcc7942_0177 0.31 +0.9
174,964 - Synpcc7942_0177 0.32 +4.5
174,964 - Synpcc7942_0177 0.32 +2.7
174,964 - Synpcc7942_0177 0.32 +3.7
174,966 + Synpcc7942_0177 0.33 +3.7
174,974 + Synpcc7942_0177 0.34 +2.9
174,982 - Synpcc7942_0177 0.35 +2.9
175,005 + Synpcc7942_0177 0.38 +3.3
175,005 + Synpcc7942_0177 0.38 +3.0
175,020 + Synpcc7942_0177 0.39 +0.1
175,035 + Synpcc7942_0177 0.41 +2.9
175,093 + Synpcc7942_0177 0.49 +3.4
175,093 + Synpcc7942_0177 0.49 -1.0
175,109 - Synpcc7942_0177 0.51 +5.6
175,125 + Synpcc7942_0177 0.53 +3.6
175,127 + Synpcc7942_0177 0.53 +4.3
175,127 + Synpcc7942_0177 0.53 +2.2
175,135 - Synpcc7942_0177 0.54 +2.3
175,208 + Synpcc7942_0177 0.63 +2.5
175,234 + Synpcc7942_0177 0.67 -1.0
175,273 + Synpcc7942_0177 0.71 +2.0
175,284 + Synpcc7942_0177 0.73 +2.8
175,292 - Synpcc7942_0177 0.74 +2.7
175,317 + Synpcc7942_0177 0.77 +3.3
175,346 - Synpcc7942_0177 0.81 +3.5
175,346 - Synpcc7942_0177 0.81 +0.7
175,362 + Synpcc7942_0177 0.83 +4.6
175,365 + +2.8
175,370 - Synpcc7942_0177 0.84 +2.4
175,397 + Synpcc7942_0177 0.87 +0.8
175,415 - Synpcc7942_0177 0.89 +2.3
175,432 + +4.0
175,457 + +1.4
175,465 - +3.0
175,465 - +4.0
175,465 - +3.2
175,467 + +2.8
175,475 - +4.3
175,489 - +2.5
175,500 - +3.4
175,505 + +4.7
175,535 - -1.0
175,549 + +2.8
175,557 - +0.2
175,582 + +3.0
175,598 + Synpcc7942_0178 0.11 +1.2
175,653 + Synpcc7942_0178 0.16 +3.4
175,664 + Synpcc7942_0178 0.17 +3.1
175,691 + Synpcc7942_0178 0.20 -0.4
175,709 - Synpcc7942_0178 0.22 +2.8
175,710 + Synpcc7942_0178 0.22 +1.0
175,730 + Synpcc7942_0178 0.24 +0.5
175,737 + Synpcc7942_0178 0.25 +1.5
175,757 + Synpcc7942_0178 0.27 +1.5
175,778 - Synpcc7942_0178 0.29 +3.3
175,793 - Synpcc7942_0178 0.31 +2.7
175,800 - Synpcc7942_0178 0.31 -1.0
175,812 - Synpcc7942_0178 0.33 +3.6
175,825 + Synpcc7942_0178 0.34 +3.7
175,825 + Synpcc7942_0178 0.34 +3.9
175,833 - Synpcc7942_0178 0.35 +2.9
175,857 + Synpcc7942_0178 0.37 +3.4
175,913 + Synpcc7942_0178 0.43 +0.7
175,924 + Synpcc7942_0178 0.44 +2.3
175,925 + Synpcc7942_0178 0.44 +2.6
175,925 + Synpcc7942_0178 0.44 +2.4
175,933 - Synpcc7942_0178 0.45 +1.8
175,933 - Synpcc7942_0178 0.45 +0.5
175,949 + Synpcc7942_0178 0.47 +1.4
175,977 + Synpcc7942_0178 0.49 +4.8
175,987 - Synpcc7942_0178 0.50 +1.0
175,992 - Synpcc7942_0178 0.51 +4.3
176,009 - Synpcc7942_0178 0.53 +3.5
176,050 + Synpcc7942_0178 0.57 -1.0
176,097 + Synpcc7942_0178 0.62 +3.5
176,105 - Synpcc7942_0178 0.62 -1.0
176,110 + Synpcc7942_0178 0.63 +0.4
176,126 + Synpcc7942_0178 0.65 +2.3
176,127 + Synpcc7942_0178 0.65 +0.7
176,127 + Synpcc7942_0178 0.65 +1.2
176,134 - Synpcc7942_0178 0.65 +4.6
176,134 - Synpcc7942_0178 0.65 +3.4
176,135 - Synpcc7942_0178 0.66 +2.3
176,135 - Synpcc7942_0178 0.66 +2.8
176,198 - Synpcc7942_0178 0.72 +3.9
176,216 + Synpcc7942_0178 0.74 +2.2
176,221 + Synpcc7942_0178 0.74 +2.1
176,251 + Synpcc7942_0178 0.77 +3.0
176,255 + Synpcc7942_0178 0.78 +1.9
176,264 - Synpcc7942_0178 0.79 +3.0
176,264 - Synpcc7942_0178 0.79 +2.8
176,340 - Synpcc7942_0178 0.87 +4.1
176,362 + Synpcc7942_0178 0.89 +4.5
176,423 - +3.2
176,427 - +1.6
176,437 + +1.2
176,443 + +2.8
176,444 - +1.5
176,445 - +0.1
176,445 - +3.2
176,451 - +2.2

Or see this region's nucleotide sequence