Experiment: Chloride 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0036 and Synpcc7942_0037 overlap by 4 nucleotides Synpcc7942_0037 and mutT are separated by 152 nucleotides mutT and gnd are separated by 174 nucleotides
Synpcc7942_0036: Synpcc7942_0036 - hypothetical protein, at 35,341 to 36,126
_0036
Synpcc7942_0037: Synpcc7942_0037 - hypothetical protein, at 36,123 to 36,326
_0037
Synpcc7942_0038: mutT - mutator MutT protein, at 36,479 to 36,955
mutT
Synpcc7942_0039: gnd - 6-phosphogluconate dehydrogenase, at 37,130 to 38,545
gnd
Position (kb) 36
37 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 35.184 kb on + strand at 35.214 kb on - strand at 35.274 kb on + strand at 35.274 kb on + strand at 35.352 kb on + strand at 35.352 kb on + strand at 35.364 kb on + strand at 35.364 kb on + strand at 35.364 kb on + strand at 35.414 kb on - strand at 35.432 kb on - strand, within Synpcc7942_0036 at 35.432 kb on - strand, within Synpcc7942_0036 at 35.463 kb on - strand, within Synpcc7942_0036 at 35.464 kb on + strand, within Synpcc7942_0036 at 35.481 kb on + strand, within Synpcc7942_0036 at 35.521 kb on - strand, within Synpcc7942_0036 at 35.539 kb on + strand, within Synpcc7942_0036 at 35.610 kb on + strand, within Synpcc7942_0036 at 35.618 kb on - strand, within Synpcc7942_0036 at 35.637 kb on - strand, within Synpcc7942_0036 at 35.642 kb on - strand, within Synpcc7942_0036 at 35.642 kb on - strand, within Synpcc7942_0036 at 35.655 kb on - strand, within Synpcc7942_0036 at 35.661 kb on + strand, within Synpcc7942_0036 at 35.661 kb on + strand, within Synpcc7942_0036 at 35.668 kb on - strand, within Synpcc7942_0036 at 35.669 kb on - strand, within Synpcc7942_0036 at 35.669 kb on - strand, within Synpcc7942_0036 at 35.682 kb on - strand, within Synpcc7942_0036 at 35.693 kb on - strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.761 kb on + strand, within Synpcc7942_0036 at 35.769 kb on - strand, within Synpcc7942_0036 at 35.769 kb on - strand, within Synpcc7942_0036 at 35.769 kb on - strand, within Synpcc7942_0036 at 35.785 kb on + strand, within Synpcc7942_0036 at 35.786 kb on + strand, within Synpcc7942_0036 at 35.790 kb on + strand, within Synpcc7942_0036 at 35.798 kb on - strand, within Synpcc7942_0036 at 35.812 kb on - strand, within Synpcc7942_0036 at 35.820 kb on + strand, within Synpcc7942_0036 at 35.822 kb on + strand, within Synpcc7942_0036 at 35.822 kb on - strand, within Synpcc7942_0036 at 35.830 kb on - strand, within Synpcc7942_0036 at 35.835 kb on - strand, within Synpcc7942_0036 at 35.841 kb on - strand, within Synpcc7942_0036 at 35.870 kb on - strand, within Synpcc7942_0036 at 35.870 kb on - strand, within Synpcc7942_0036 at 35.891 kb on - strand, within Synpcc7942_0036 at 35.891 kb on - strand, within Synpcc7942_0036 at 35.893 kb on + strand, within Synpcc7942_0036 at 35.901 kb on - strand, within Synpcc7942_0036 at 35.913 kb on - strand, within Synpcc7942_0036 at 35.926 kb on + strand, within Synpcc7942_0036 at 35.926 kb on - strand, within Synpcc7942_0036 at 35.943 kb on + strand, within Synpcc7942_0036 at 35.944 kb on + strand, within Synpcc7942_0036 at 35.950 kb on + strand, within Synpcc7942_0036 at 35.951 kb on - strand, within Synpcc7942_0036 at 35.953 kb on - strand, within Synpcc7942_0036 at 35.967 kb on + strand, within Synpcc7942_0036 at 35.967 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.972 kb on + strand, within Synpcc7942_0036 at 35.975 kb on - strand, within Synpcc7942_0036 at 35.975 kb on - strand, within Synpcc7942_0036 at 35.975 kb on - strand, within Synpcc7942_0036 at 35.977 kb on + strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.980 kb on - strand, within Synpcc7942_0036 at 35.999 kb on + strand, within Synpcc7942_0036 at 36.001 kb on - strand, within Synpcc7942_0036 at 36.012 kb on + strand, within Synpcc7942_0036 at 36.018 kb on - strand, within Synpcc7942_0036 at 36.025 kb on + strand, within Synpcc7942_0036 at 36.037 kb on - strand, within Synpcc7942_0036 at 36.064 kb on + strand at 36.072 kb on - strand at 36.084 kb on - strand at 36.101 kb on + strand at 36.101 kb on + strand at 36.101 kb on + strand at 36.106 kb on + strand at 36.111 kb on + strand at 36.111 kb on + strand at 36.111 kb on + strand at 36.111 kb on + strand at 36.111 kb on - strand at 36.119 kb on - strand at 36.120 kb on + strand at 36.120 kb on + strand at 36.121 kb on + strand at 36.142 kb on - strand at 36.218 kb on + strand, within Synpcc7942_0037 at 36.280 kb on - strand, within Synpcc7942_0037 at 36.287 kb on - strand, within Synpcc7942_0037 at 36.403 kb on - strand at 36.413 kb on - strand at 36.416 kb on + strand at 36.419 kb on - strand at 36.426 kb on + strand at 36.429 kb on - strand at 36.505 kb on + strand at 36.518 kb on - strand at 36.537 kb on + strand, within mutT at 36.552 kb on + strand, within mutT at 36.562 kb on - strand, within mutT at 36.563 kb on - strand, within mutT at 36.755 kb on + strand, within mutT at 36.794 kb on + strand, within mutT at 36.837 kb on - strand, within mutT at 36.855 kb on + strand, within mutT at 36.855 kb on + strand, within mutT at 36.863 kb on - strand, within mutT at 36.863 kb on - strand, within mutT at 36.863 kb on - strand, within mutT at 36.863 kb on - strand, within mutT at 36.907 kb on + strand, within mutT at 36.915 kb on - strand at 36.938 kb on - strand at 36.938 kb on - strand at 36.938 kb on - strand at 36.957 kb on - strand at 37.016 kb on - strand at 37.061 kb on - strand at 37.092 kb on + strand at 37.144 kb on - strand at 37.152 kb on - strand at 37.220 kb on + strand at 37.220 kb on + strand at 37.220 kb on + strand at 37.220 kb on + strand at 37.220 kb on + strand at 37.228 kb on - strand at 37.228 kb on - strand at 37.228 kb on - strand at 37.228 kb on - strand at 37.252 kb on + strand at 37.260 kb on - strand at 37.274 kb on + strand, within gnd at 37.301 kb on + strand, within gnd
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 31.25 mM remove 35,184 + -1.1 35,214 - +3.1 35,274 + -0.1 35,274 + -0.2 35,352 + +1.8 35,352 + +0.4 35,364 + +1.6 35,364 + -1.1 35,364 + +0.8 35,414 - +0.9 35,432 - Synpcc7942_0036 0.12 +3.4 35,432 - Synpcc7942_0036 0.12 +0.9 35,463 - Synpcc7942_0036 0.16 -0.7 35,464 + Synpcc7942_0036 0.16 +2.2 35,481 + Synpcc7942_0036 0.18 +1.4 35,521 - Synpcc7942_0036 0.23 +0.1 35,539 + Synpcc7942_0036 0.25 -1.1 35,610 + Synpcc7942_0036 0.34 +1.3 35,618 - Synpcc7942_0036 0.35 -2.1 35,637 - Synpcc7942_0036 0.38 +3.2 35,642 - Synpcc7942_0036 0.38 -2.1 35,642 - Synpcc7942_0036 0.38 -2.6 35,655 - Synpcc7942_0036 0.40 +3.7 35,661 + Synpcc7942_0036 0.41 -2.6 35,661 + Synpcc7942_0036 0.41 +2.3 35,668 - Synpcc7942_0036 0.42 +2.1 35,669 - Synpcc7942_0036 0.42 -1.1 35,669 - Synpcc7942_0036 0.42 +0.3 35,682 - Synpcc7942_0036 0.43 +0.7 35,693 - Synpcc7942_0036 0.45 +1.2 35,761 + Synpcc7942_0036 0.53 -1.1 35,761 + Synpcc7942_0036 0.53 +2.2 35,761 + Synpcc7942_0036 0.53 -3.1 35,761 + Synpcc7942_0036 0.53 +1.2 35,761 + Synpcc7942_0036 0.53 +1.5 35,769 - Synpcc7942_0036 0.54 -2.1 35,769 - Synpcc7942_0036 0.54 +0.9 35,769 - Synpcc7942_0036 0.54 +3.6 35,785 + Synpcc7942_0036 0.56 -0.3 35,786 + Synpcc7942_0036 0.57 -1.5 35,790 + Synpcc7942_0036 0.57 -1.1 35,798 - Synpcc7942_0036 0.58 +1.8 35,812 - Synpcc7942_0036 0.60 +0.5 35,820 + Synpcc7942_0036 0.61 +0.7 35,822 + Synpcc7942_0036 0.61 +1.4 35,822 - Synpcc7942_0036 0.61 -1.1 35,830 - Synpcc7942_0036 0.62 +0.9 35,835 - Synpcc7942_0036 0.63 +0.9 35,841 - Synpcc7942_0036 0.64 -0.1 35,870 - Synpcc7942_0036 0.67 -1.6 35,870 - Synpcc7942_0036 0.67 -2.6 35,891 - Synpcc7942_0036 0.70 +1.5 35,891 - Synpcc7942_0036 0.70 +0.3 35,893 + Synpcc7942_0036 0.70 +0.9 35,901 - Synpcc7942_0036 0.71 +0.5 35,913 - Synpcc7942_0036 0.73 +0.7 35,926 + Synpcc7942_0036 0.74 -1.1 35,926 - Synpcc7942_0036 0.74 +1.5 35,943 + Synpcc7942_0036 0.77 +0.8 35,944 + Synpcc7942_0036 0.77 +0.9 35,950 + Synpcc7942_0036 0.77 -0.5 35,951 - Synpcc7942_0036 0.78 -2.1 35,953 - Synpcc7942_0036 0.78 -2.1 35,967 + Synpcc7942_0036 0.80 -1.0 35,967 + Synpcc7942_0036 0.80 -1.1 35,972 + Synpcc7942_0036 0.80 +1.1 35,972 + Synpcc7942_0036 0.80 -0.6 35,972 + Synpcc7942_0036 0.80 +0.4 35,972 + Synpcc7942_0036 0.80 -1.1 35,972 + Synpcc7942_0036 0.80 +1.3 35,972 + Synpcc7942_0036 0.80 +1.9 35,972 + Synpcc7942_0036 0.80 -0.5 35,975 - Synpcc7942_0036 0.81 -0.3 35,975 - Synpcc7942_0036 0.81 +1.1 35,975 - Synpcc7942_0036 0.81 +0.9 35,977 + Synpcc7942_0036 0.81 +0.8 35,980 - Synpcc7942_0036 0.81 -0.3 35,980 - Synpcc7942_0036 0.81 -3.6 35,980 - Synpcc7942_0036 0.81 +1.5 35,980 - Synpcc7942_0036 0.81 -1.1 35,980 - Synpcc7942_0036 0.81 -0.1 35,999 + Synpcc7942_0036 0.84 -1.1 36,001 - Synpcc7942_0036 0.84 +0.5 36,012 + Synpcc7942_0036 0.85 -1.1 36,018 - Synpcc7942_0036 0.86 -2.4 36,025 + Synpcc7942_0036 0.87 +2.9 36,037 - Synpcc7942_0036 0.89 +0.3 36,064 + +0.2 36,072 - -1.1 36,084 - +0.3 36,101 + +3.5 36,101 + +1.4 36,101 + -0.1 36,106 + +1.1 36,111 + +0.9 36,111 + +1.1 36,111 + +5.1 36,111 + +1.5 36,111 - +0.5 36,119 - +0.2 36,120 + -0.1 36,120 + -0.8 36,121 + +1.9 36,142 - +0.3 36,218 + Synpcc7942_0037 0.47 -1.1 36,280 - Synpcc7942_0037 0.77 -1.5 36,287 - Synpcc7942_0037 0.80 +2.3 36,403 - +2.5 36,413 - +2.7 36,416 + +0.8 36,419 - +1.7 36,426 + +1.1 36,429 - -3.9 36,505 + +2.7 36,518 - -1.6 36,537 + mutT Synpcc7942_0038 0.12 -0.2 36,552 + mutT Synpcc7942_0038 0.15 -1.1 36,562 - mutT Synpcc7942_0038 0.17 +2.6 36,563 - mutT Synpcc7942_0038 0.18 +0.5 36,755 + mutT Synpcc7942_0038 0.58 -3.1 36,794 + mutT Synpcc7942_0038 0.66 -1.1 36,837 - mutT Synpcc7942_0038 0.75 -0.2 36,855 + mutT Synpcc7942_0038 0.79 -2.1 36,855 + mutT Synpcc7942_0038 0.79 +0.1 36,863 - mutT Synpcc7942_0038 0.81 +0.1 36,863 - mutT Synpcc7942_0038 0.81 +2.9 36,863 - mutT Synpcc7942_0038 0.81 +0.2 36,863 - mutT Synpcc7942_0038 0.81 -2.6 36,907 + mutT Synpcc7942_0038 0.90 +1.2 36,915 - +0.2 36,938 - +1.5 36,938 - -2.6 36,938 - +0.1 36,957 - -0.1 37,016 - +2.8 37,061 - +0.5 37,092 + -2.1 37,144 - -2.1 37,152 - +1.8 37,220 + -2.1 37,220 + -2.1 37,220 + -2.1 37,220 + -1.1 37,220 + -1.1 37,228 - -1.1 37,228 - -1.1 37,228 - -3.6 37,228 - -1.1 37,252 + -2.6 37,260 - -2.1 37,274 + gnd Synpcc7942_0039 0.10 -1.1 37,301 + gnd Synpcc7942_0039 0.12 -2.1
Or see this region's nucleotide sequence