Experiment: Thallium(I) acetate 0.0025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03869 and SMc03870 are separated by 31 nucleotides SMc03870 and SMc03871 overlap by 4 nucleotides
SMc03869: SMc03869 - thiamine transporter substrate binding subunit, at 3,533,027 to 3,534,055
SMc03869
SMc03870: SMc03870 - thiamine transporter membrane protein, at 3,534,087 to 3,535,694
SMc03870
SMc03871: SMc03871 - ABC transporter ATP-binding protein, at 3,535,691 to 3,536,407
SMc03871
Position (kb)
3534
3535
3536 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3533.136 kb on - strand, within SMc03869 at 3533.136 kb on - strand, within SMc03869 at 3533.137 kb on + strand, within SMc03869 at 3533.137 kb on + strand, within SMc03869 at 3533.137 kb on + strand, within SMc03869 at 3533.138 kb on - strand, within SMc03869 at 3533.138 kb on - strand, within SMc03869 at 3533.141 kb on + strand, within SMc03869 at 3533.141 kb on + strand, within SMc03869 at 3533.141 kb on + strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.222 kb on + strand, within SMc03869 at 3533.227 kb on - strand, within SMc03869 at 3533.229 kb on - strand, within SMc03869 at 3533.415 kb on + strand, within SMc03869 at 3533.416 kb on - strand, within SMc03869 at 3533.416 kb on - strand, within SMc03869 at 3533.420 kb on + strand, within SMc03869 at 3533.421 kb on - strand, within SMc03869 at 3533.426 kb on + strand, within SMc03869 at 3533.426 kb on + strand, within SMc03869 at 3533.426 kb on + strand, within SMc03869 at 3533.663 kb on + strand, within SMc03869 at 3533.664 kb on - strand, within SMc03869 at 3533.705 kb on + strand, within SMc03869 at 3533.705 kb on + strand, within SMc03869 at 3533.705 kb on + strand, within SMc03869 at 3533.706 kb on - strand, within SMc03869 at 3533.724 kb on - strand, within SMc03869 at 3533.783 kb on + strand, within SMc03869 at 3533.783 kb on + strand, within SMc03869 at 3533.785 kb on + strand, within SMc03869 at 3533.786 kb on - strand, within SMc03869 at 3533.786 kb on - strand, within SMc03869 at 3533.786 kb on - strand, within SMc03869 at 3534.207 kb on + strand at 3534.207 kb on + strand at 3534.207 kb on + strand at 3534.207 kb on + strand at 3534.207 kb on + strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.210 kb on - strand at 3534.271 kb on + strand, within SMc03870 at 3534.271 kb on + strand, within SMc03870 at 3534.272 kb on - strand, within SMc03870 at 3534.468 kb on + strand, within SMc03870 at 3534.468 kb on + strand, within SMc03870 at 3534.468 kb on + strand, within SMc03870 at 3534.469 kb on - strand, within SMc03870 at 3534.469 kb on - strand, within SMc03870 at 3534.469 kb on - strand, within SMc03870 at 3534.469 kb on - strand, within SMc03870 at 3534.564 kb on + strand, within SMc03870 at 3534.564 kb on + strand, within SMc03870 at 3534.750 kb on + strand, within SMc03870 at 3534.751 kb on - strand, within SMc03870 at 3534.950 kb on - strand, within SMc03870 at 3534.995 kb on + strand, within SMc03870 at 3535.210 kb on + strand, within SMc03870 at 3535.211 kb on - strand, within SMc03870 at 3535.564 kb on - strand at 3535.581 kb on + strand at 3535.582 kb on - strand at 3535.682 kb on + strand at 3535.683 kb on - strand at 3535.728 kb on + strand at 3535.930 kb on - strand, within SMc03871 at 3535.942 kb on + strand, within SMc03871 at 3535.942 kb on + strand, within SMc03871 at 3535.942 kb on + strand, within SMc03871 at 3535.943 kb on - strand, within SMc03871 at 3535.943 kb on - strand, within SMc03871 at 3536.251 kb on - strand, within SMc03871 at 3536.411 kb on - strand at 3536.411 kb on - strand at 3536.509 kb on + strand at 3536.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml remove 3,533,136 - SMc03869 0.11 -1.8 3,533,136 - SMc03869 0.11 +1.5 3,533,137 + SMc03869 0.11 +1.1 3,533,137 + SMc03869 0.11 -0.5 3,533,137 + SMc03869 0.11 -1.9 3,533,138 - SMc03869 0.11 -3.9 3,533,138 - SMc03869 0.11 -2.4 3,533,141 + SMc03869 0.11 -0.4 3,533,141 + SMc03869 0.11 -0.5 3,533,141 + SMc03869 0.11 +0.1 3,533,142 - SMc03869 0.11 -0.5 3,533,142 - SMc03869 0.11 -0.3 3,533,142 - SMc03869 0.11 -2.5 3,533,142 - SMc03869 0.11 -1.8 3,533,142 - SMc03869 0.11 +2.0 3,533,222 + SMc03869 0.19 -0.8 3,533,227 - SMc03869 0.19 +0.9 3,533,229 - SMc03869 0.20 -0.4 3,533,415 + SMc03869 0.38 +0.2 3,533,416 - SMc03869 0.38 -0.5 3,533,416 - SMc03869 0.38 -0.1 3,533,420 + SMc03869 0.38 -1.6 3,533,421 - SMc03869 0.38 -1.6 3,533,426 + SMc03869 0.39 +0.1 3,533,426 + SMc03869 0.39 -0.6 3,533,426 + SMc03869 0.39 +0.8 3,533,663 + SMc03869 0.62 +0.0 3,533,664 - SMc03869 0.62 -0.5 3,533,705 + SMc03869 0.66 -3.3 3,533,705 + SMc03869 0.66 -0.8 3,533,705 + SMc03869 0.66 -0.0 3,533,706 - SMc03869 0.66 -0.6 3,533,724 - SMc03869 0.68 -1.8 3,533,783 + SMc03869 0.73 -0.8 3,533,783 + SMc03869 0.73 -4.0 3,533,785 + SMc03869 0.74 -0.2 3,533,786 - SMc03869 0.74 +0.6 3,533,786 - SMc03869 0.74 -0.5 3,533,786 - SMc03869 0.74 -0.5 3,534,207 + -1.6 3,534,207 + -0.5 3,534,207 + -0.4 3,534,207 + +0.1 3,534,207 + +1.0 3,534,208 - +0.7 3,534,208 - -0.2 3,534,208 - -0.4 3,534,208 - -0.6 3,534,208 - -0.5 3,534,208 - +2.7 3,534,208 - +0.3 3,534,209 + -0.8 3,534,209 + -0.8 3,534,209 + -1.8 3,534,209 + -0.5 3,534,209 + -0.1 3,534,209 + -2.1 3,534,210 - -2.2 3,534,271 + SMc03870 0.11 -0.7 3,534,271 + SMc03870 0.11 -2.1 3,534,272 - SMc03870 0.12 +0.5 3,534,468 + SMc03870 0.24 -1.7 3,534,468 + SMc03870 0.24 +0.4 3,534,468 + SMc03870 0.24 -2.0 3,534,469 - SMc03870 0.24 -1.1 3,534,469 - SMc03870 0.24 -0.7 3,534,469 - SMc03870 0.24 -0.4 3,534,469 - SMc03870 0.24 -0.4 3,534,564 + SMc03870 0.30 +1.4 3,534,564 + SMc03870 0.30 -0.6 3,534,750 + SMc03870 0.41 -0.7 3,534,751 - SMc03870 0.41 -0.8 3,534,950 - SMc03870 0.54 -1.5 3,534,995 + SMc03870 0.56 -1.1 3,535,210 + SMc03870 0.70 -0.4 3,535,211 - SMc03870 0.70 -1.0 3,535,564 - -0.2 3,535,581 + -0.8 3,535,582 - +1.5 3,535,682 + -0.7 3,535,683 - +0.1 3,535,728 + -2.5 3,535,930 - SMc03871 0.33 +0.2 3,535,942 + SMc03871 0.35 +0.6 3,535,942 + SMc03871 0.35 +1.7 3,535,942 + SMc03871 0.35 +0.3 3,535,943 - SMc03871 0.35 -0.8 3,535,943 - SMc03871 0.35 -0.2 3,536,251 - SMc03871 0.78 -0.7 3,536,411 - +0.0 3,536,411 - +0.4 3,536,509 + -0.9 3,536,563 - -2.2
Or see this region's nucleotide sequence