Strain Fitness in Sinorhizobium meliloti 1021 around SMc03870

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03869 and SMc03870 are separated by 31 nucleotidesSMc03870 and SMc03871 overlap by 4 nucleotides SMc03869: SMc03869 - thiamine transporter substrate binding subunit, at 3,533,027 to 3,534,055 SMc03869 SMc03870: SMc03870 - thiamine transporter membrane protein, at 3,534,087 to 3,535,694 SMc03870 SMc03871: SMc03871 - ABC transporter ATP-binding protein, at 3,535,691 to 3,536,407 SMc03871 Position (kb) 3534 3535 3536Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3533.136 kb on - strand, within SMc03869at 3533.136 kb on - strand, within SMc03869at 3533.137 kb on + strand, within SMc03869at 3533.137 kb on + strand, within SMc03869at 3533.137 kb on + strand, within SMc03869at 3533.138 kb on - strand, within SMc03869at 3533.138 kb on - strand, within SMc03869at 3533.141 kb on + strand, within SMc03869at 3533.141 kb on + strand, within SMc03869at 3533.141 kb on + strand, within SMc03869at 3533.142 kb on - strand, within SMc03869at 3533.142 kb on - strand, within SMc03869at 3533.142 kb on - strand, within SMc03869at 3533.142 kb on - strand, within SMc03869at 3533.142 kb on - strand, within SMc03869at 3533.222 kb on + strand, within SMc03869at 3533.227 kb on - strand, within SMc03869at 3533.229 kb on - strand, within SMc03869at 3533.415 kb on + strand, within SMc03869at 3533.416 kb on - strand, within SMc03869at 3533.416 kb on - strand, within SMc03869at 3533.420 kb on + strand, within SMc03869at 3533.421 kb on - strand, within SMc03869at 3533.426 kb on + strand, within SMc03869at 3533.426 kb on + strand, within SMc03869at 3533.426 kb on + strand, within SMc03869at 3533.663 kb on + strand, within SMc03869at 3533.664 kb on - strand, within SMc03869at 3533.705 kb on + strand, within SMc03869at 3533.705 kb on + strand, within SMc03869at 3533.705 kb on + strand, within SMc03869at 3533.706 kb on - strand, within SMc03869at 3533.724 kb on - strand, within SMc03869at 3533.783 kb on + strand, within SMc03869at 3533.783 kb on + strand, within SMc03869at 3533.785 kb on + strand, within SMc03869at 3533.786 kb on - strand, within SMc03869at 3533.786 kb on - strand, within SMc03869at 3533.786 kb on - strand, within SMc03869at 3534.207 kb on + strandat 3534.207 kb on + strandat 3534.207 kb on + strandat 3534.207 kb on + strandat 3534.207 kb on + strandat 3534.208 kb on - strandat 3534.208 kb on - strandat 3534.208 kb on - strandat 3534.208 kb on - strandat 3534.208 kb on - strandat 3534.208 kb on - strandat 3534.208 kb on - strandat 3534.209 kb on + strandat 3534.209 kb on + strandat 3534.209 kb on + strandat 3534.209 kb on + strandat 3534.209 kb on + strandat 3534.209 kb on + strandat 3534.210 kb on - strandat 3534.271 kb on + strand, within SMc03870at 3534.271 kb on + strand, within SMc03870at 3534.272 kb on - strand, within SMc03870at 3534.468 kb on + strand, within SMc03870at 3534.468 kb on + strand, within SMc03870at 3534.468 kb on + strand, within SMc03870at 3534.469 kb on - strand, within SMc03870at 3534.469 kb on - strand, within SMc03870at 3534.469 kb on - strand, within SMc03870at 3534.469 kb on - strand, within SMc03870at 3534.564 kb on + strand, within SMc03870at 3534.564 kb on + strand, within SMc03870at 3534.750 kb on + strand, within SMc03870at 3534.751 kb on - strand, within SMc03870at 3534.950 kb on - strand, within SMc03870at 3534.995 kb on + strand, within SMc03870at 3535.210 kb on + strand, within SMc03870at 3535.211 kb on - strand, within SMc03870at 3535.564 kb on - strandat 3535.581 kb on + strandat 3535.582 kb on - strandat 3535.682 kb on + strandat 3535.683 kb on - strandat 3535.728 kb on + strandat 3535.930 kb on - strand, within SMc03871at 3535.942 kb on + strand, within SMc03871at 3535.942 kb on + strand, within SMc03871at 3535.942 kb on + strand, within SMc03871at 3535.943 kb on - strand, within SMc03871at 3535.943 kb on - strand, within SMc03871at 3536.251 kb on - strand, within SMc03871at 3536.411 kb on - strandat 3536.411 kb on - strandat 3536.509 kb on + strandat 3536.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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3,533,136 - SMc03869 0.11 -1.8
3,533,136 - SMc03869 0.11 +1.5
3,533,137 + SMc03869 0.11 +1.1
3,533,137 + SMc03869 0.11 -0.5
3,533,137 + SMc03869 0.11 -1.9
3,533,138 - SMc03869 0.11 -3.9
3,533,138 - SMc03869 0.11 -2.4
3,533,141 + SMc03869 0.11 -0.4
3,533,141 + SMc03869 0.11 -0.5
3,533,141 + SMc03869 0.11 +0.1
3,533,142 - SMc03869 0.11 -0.5
3,533,142 - SMc03869 0.11 -0.3
3,533,142 - SMc03869 0.11 -2.5
3,533,142 - SMc03869 0.11 -1.8
3,533,142 - SMc03869 0.11 +2.0
3,533,222 + SMc03869 0.19 -0.8
3,533,227 - SMc03869 0.19 +0.9
3,533,229 - SMc03869 0.20 -0.4
3,533,415 + SMc03869 0.38 +0.2
3,533,416 - SMc03869 0.38 -0.5
3,533,416 - SMc03869 0.38 -0.1
3,533,420 + SMc03869 0.38 -1.6
3,533,421 - SMc03869 0.38 -1.6
3,533,426 + SMc03869 0.39 +0.1
3,533,426 + SMc03869 0.39 -0.6
3,533,426 + SMc03869 0.39 +0.8
3,533,663 + SMc03869 0.62 +0.0
3,533,664 - SMc03869 0.62 -0.5
3,533,705 + SMc03869 0.66 -3.3
3,533,705 + SMc03869 0.66 -0.8
3,533,705 + SMc03869 0.66 -0.0
3,533,706 - SMc03869 0.66 -0.6
3,533,724 - SMc03869 0.68 -1.8
3,533,783 + SMc03869 0.73 -0.8
3,533,783 + SMc03869 0.73 -4.0
3,533,785 + SMc03869 0.74 -0.2
3,533,786 - SMc03869 0.74 +0.6
3,533,786 - SMc03869 0.74 -0.5
3,533,786 - SMc03869 0.74 -0.5
3,534,207 + -1.6
3,534,207 + -0.5
3,534,207 + -0.4
3,534,207 + +0.1
3,534,207 + +1.0
3,534,208 - +0.7
3,534,208 - -0.2
3,534,208 - -0.4
3,534,208 - -0.6
3,534,208 - -0.5
3,534,208 - +2.7
3,534,208 - +0.3
3,534,209 + -0.8
3,534,209 + -0.8
3,534,209 + -1.8
3,534,209 + -0.5
3,534,209 + -0.1
3,534,209 + -2.1
3,534,210 - -2.2
3,534,271 + SMc03870 0.11 -0.7
3,534,271 + SMc03870 0.11 -2.1
3,534,272 - SMc03870 0.12 +0.5
3,534,468 + SMc03870 0.24 -1.7
3,534,468 + SMc03870 0.24 +0.4
3,534,468 + SMc03870 0.24 -2.0
3,534,469 - SMc03870 0.24 -1.1
3,534,469 - SMc03870 0.24 -0.7
3,534,469 - SMc03870 0.24 -0.4
3,534,469 - SMc03870 0.24 -0.4
3,534,564 + SMc03870 0.30 +1.4
3,534,564 + SMc03870 0.30 -0.6
3,534,750 + SMc03870 0.41 -0.7
3,534,751 - SMc03870 0.41 -0.8
3,534,950 - SMc03870 0.54 -1.5
3,534,995 + SMc03870 0.56 -1.1
3,535,210 + SMc03870 0.70 -0.4
3,535,211 - SMc03870 0.70 -1.0
3,535,564 - -0.2
3,535,581 + -0.8
3,535,582 - +1.5
3,535,682 + -0.7
3,535,683 - +0.1
3,535,728 + -2.5
3,535,930 - SMc03871 0.33 +0.2
3,535,942 + SMc03871 0.35 +0.6
3,535,942 + SMc03871 0.35 +1.7
3,535,942 + SMc03871 0.35 +0.3
3,535,943 - SMc03871 0.35 -0.8
3,535,943 - SMc03871 0.35 -0.2
3,536,251 - SMc03871 0.78 -0.7
3,536,411 - +0.0
3,536,411 - +0.4
3,536,509 + -0.9
3,536,563 - -2.2

Or see this region's nucleotide sequence