Strain Fitness in Sinorhizobium meliloti 1021 around SMc03298

Experiment: Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03298 and SMc03300 are separated by 75 nucleotidesSMc03300 and SMc03301 overlap by 4 nucleotides SMc03298: SMc03298 - transposase number 3 for insertion sequence ISRM26, at 3,413,617 to 3,415,230 SMc03298 SMc03300: SMc03300 - transposase number 2 for insertion sequence ISRM26, at 3,415,306 to 3,415,650 SMc03300 SMc03301: SMc03301 - transposase number 1 for insertion sequence ISRM26, at 3,415,647 to 3,416,033 SMc03301 Position (kb) 3413 3414 3415 3416Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3412.669 kb on - strandat 3412.813 kb on - strandat 3412.818 kb on - strandat 3412.822 kb on + strandat 3412.854 kb on + strandat 3412.930 kb on - strandat 3412.930 kb on - strandat 3412.990 kb on - strandat 3412.990 kb on - strandat 3413.005 kb on + strandat 3413.006 kb on - strandat 3413.009 kb on + strandat 3413.050 kb on + strandat 3413.051 kb on - strandat 3413.051 kb on - strandat 3413.051 kb on - strandat 3413.051 kb on - strandat 3413.060 kb on + strandat 3413.116 kb on + strandat 3413.116 kb on + strandat 3413.117 kb on - strandat 3413.161 kb on + strandat 3413.196 kb on - strandat 3413.198 kb on + strandat 3413.277 kb on + strandat 3413.277 kb on + strandat 3413.277 kb on + strandat 3413.277 kb on + strandat 3413.277 kb on + strandat 3413.278 kb on - strandat 3413.281 kb on + strandat 3413.282 kb on - strandat 3413.511 kb on + strandat 3413.512 kb on - strandat 3413.517 kb on + strandat 3413.517 kb on + strandat 3413.518 kb on - strandat 3413.548 kb on + strandat 3413.561 kb on + strandat 3413.562 kb on - strandat 3413.565 kb on + strandat 3413.565 kb on + strandat 3413.565 kb on + strandat 3413.566 kb on - strandat 3413.566 kb on - strandat 3413.610 kb on + strandat 3413.610 kb on + strandat 3413.610 kb on + strandat 3413.610 kb on + strandat 3413.611 kb on - strandat 3413.806 kb on + strand, within SMc03298at 3413.806 kb on + strand, within SMc03298at 3413.806 kb on + strand, within SMc03298at 3413.806 kb on + strand, within SMc03298at 3413.806 kb on + strand, within SMc03298at 3413.806 kb on + strand, within SMc03298at 3413.807 kb on - strand, within SMc03298at 3413.811 kb on + strand, within SMc03298at 3413.812 kb on - strand, within SMc03298at 3413.812 kb on - strand, within SMc03298at 3413.812 kb on - strand, within SMc03298at 3414.146 kb on + strand, within SMc03298at 3414.160 kb on + strand, within SMc03298at 3414.160 kb on + strand, within SMc03298at 3414.231 kb on + strand, within SMc03298at 3414.231 kb on + strand, within SMc03298at 3414.232 kb on - strand, within SMc03298at 3414.232 kb on - strand, within SMc03298at 3414.235 kb on - strand, within SMc03298at 3414.327 kb on - strand, within SMc03298at 3414.356 kb on + strand, within SMc03298at 3414.357 kb on - strand, within SMc03298at 3414.377 kb on + strand, within SMc03298at 3414.378 kb on - strand, within SMc03298at 3414.378 kb on - strand, within SMc03298at 3414.483 kb on + strand, within SMc03298at 3414.485 kb on + strand, within SMc03298at 3414.486 kb on - strand, within SMc03298at 3414.486 kb on - strand, within SMc03298at 3414.572 kb on + strand, within SMc03298at 3414.572 kb on + strand, within SMc03298at 3414.573 kb on - strand, within SMc03298at 3414.629 kb on + strand, within SMc03298at 3414.629 kb on + strand, within SMc03298at 3414.629 kb on + strand, within SMc03298at 3414.629 kb on + strand, within SMc03298at 3414.629 kb on + strand, within SMc03298at 3414.629 kb on + strand, within SMc03298at 3414.629 kb on + strand, within SMc03298at 3414.630 kb on - strand, within SMc03298at 3414.630 kb on - strand, within SMc03298at 3414.630 kb on - strand, within SMc03298at 3414.720 kb on - strand, within SMc03298at 3414.741 kb on + strand, within SMc03298at 3414.741 kb on + strand, within SMc03298at 3414.764 kb on - strand, within SMc03298at 3414.764 kb on - strand, within SMc03298at 3415.241 kb on - strandat 3415.273 kb on - strandat 3415.381 kb on + strand, within SMc03300at 3415.382 kb on - strand, within SMc03300at 3415.402 kb on + strand, within SMc03300at 3415.403 kb on - strand, within SMc03300at 3415.417 kb on + strand, within SMc03300at 3415.529 kb on + strand, within SMc03300at 3415.530 kb on - strand, within SMc03300at 3415.530 kb on - strand, within SMc03300at 3415.625 kb on + strandat 3415.672 kb on - strandat 3415.672 kb on - strandat 3416.086 kb on + strandat 3416.086 kb on + strandat 3416.108 kb on + strandat 3416.109 kb on - strandat 3416.132 kb on - strandat 3416.152 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0025 mg/ml
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3,412,669 - -0.2
3,412,813 - -1.9
3,412,818 - +0.5
3,412,822 + +0.7
3,412,854 + +0.4
3,412,930 - +0.1
3,412,930 - -0.2
3,412,990 - -0.6
3,412,990 - -1.2
3,413,005 + -1.9
3,413,006 - -0.4
3,413,009 + +0.6
3,413,050 + +0.6
3,413,051 - -0.5
3,413,051 - +0.1
3,413,051 - -0.3
3,413,051 - -1.2
3,413,060 + -0.2
3,413,116 + -0.5
3,413,116 + -0.3
3,413,117 - -1.1
3,413,161 + -0.5
3,413,196 - -0.7
3,413,198 + -0.3
3,413,277 + -0.4
3,413,277 + +0.2
3,413,277 + +0.6
3,413,277 + -0.5
3,413,277 + +1.2
3,413,278 - +0.2
3,413,281 + +1.5
3,413,282 - +0.1
3,413,511 + +0.4
3,413,512 - -0.4
3,413,517 + +0.2
3,413,517 + +2.2
3,413,518 - +1.1
3,413,548 + -2.1
3,413,561 + +0.0
3,413,562 - -0.3
3,413,565 + -0.0
3,413,565 + -0.9
3,413,565 + -1.3
3,413,566 - +0.9
3,413,566 - +0.4
3,413,610 + -1.7
3,413,610 + +1.7
3,413,610 + +0.2
3,413,610 + -0.4
3,413,611 - +0.6
3,413,806 + SMc03298 0.12 -0.6
3,413,806 + SMc03298 0.12 +4.3
3,413,806 + SMc03298 0.12 +1.4
3,413,806 + SMc03298 0.12 -2.2
3,413,806 + SMc03298 0.12 +0.4
3,413,806 + SMc03298 0.12 -0.7
3,413,807 - SMc03298 0.12 +0.7
3,413,811 + SMc03298 0.12 +0.2
3,413,812 - SMc03298 0.12 +2.8
3,413,812 - SMc03298 0.12 +1.3
3,413,812 - SMc03298 0.12 +0.5
3,414,146 + SMc03298 0.33 -1.7
3,414,160 + SMc03298 0.34 +0.7
3,414,160 + SMc03298 0.34 +0.3
3,414,231 + SMc03298 0.38 -0.2
3,414,231 + SMc03298 0.38 -0.0
3,414,232 - SMc03298 0.38 +0.9
3,414,232 - SMc03298 0.38 -2.6
3,414,235 - SMc03298 0.38 +0.6
3,414,327 - SMc03298 0.44 +0.0
3,414,356 + SMc03298 0.46 +0.3
3,414,357 - SMc03298 0.46 +0.1
3,414,377 + SMc03298 0.47 +1.0
3,414,378 - SMc03298 0.47 +0.6
3,414,378 - SMc03298 0.47 +0.4
3,414,483 + SMc03298 0.54 +1.4
3,414,485 + SMc03298 0.54 +0.6
3,414,486 - SMc03298 0.54 +0.4
3,414,486 - SMc03298 0.54 -0.1
3,414,572 + SMc03298 0.59 +0.1
3,414,572 + SMc03298 0.59 -1.2
3,414,573 - SMc03298 0.59 +0.7
3,414,629 + SMc03298 0.63 +0.9
3,414,629 + SMc03298 0.63 -1.1
3,414,629 + SMc03298 0.63 +0.2
3,414,629 + SMc03298 0.63 -0.5
3,414,629 + SMc03298 0.63 +1.8
3,414,629 + SMc03298 0.63 +0.4
3,414,629 + SMc03298 0.63 +0.4
3,414,630 - SMc03298 0.63 +0.4
3,414,630 - SMc03298 0.63 +0.4
3,414,630 - SMc03298 0.63 +0.2
3,414,720 - SMc03298 0.68 -0.2
3,414,741 + SMc03298 0.70 +0.6
3,414,741 + SMc03298 0.70 +1.0
3,414,764 - SMc03298 0.71 -2.4
3,414,764 - SMc03298 0.71 -1.2
3,415,241 - +0.5
3,415,273 - -0.3
3,415,381 + SMc03300 0.22 -1.0
3,415,382 - SMc03300 0.22 -2.1
3,415,402 + SMc03300 0.28 -0.4
3,415,403 - SMc03300 0.28 +0.7
3,415,417 + SMc03300 0.32 -0.2
3,415,529 + SMc03300 0.65 +0.6
3,415,530 - SMc03300 0.65 +0.5
3,415,530 - SMc03300 0.65 +0.2
3,415,625 + +0.7
3,415,672 - -0.4
3,415,672 - -0.8
3,416,086 + -0.0
3,416,086 + -0.5
3,416,108 + +1.7
3,416,109 - +0.0
3,416,132 - -0.5
3,416,152 - -0.7

Or see this region's nucleotide sequence